genome.fa.s20.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  165  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49423062--49423090	13	2.1	14	93	6	51	41	0	0	58	0.98
49424843--49424935	25	3.6	24	72	19	80	52	2	0	45	1.12
49424657--49424900	131	1.9	129	84	5	330	49	4	5	40	1.47
49424830--49424935	55	1.9	55	90	7	171	54	2	0	42	1.15
49433678--49433728	24	2.1	25	85	3	68	52	1	5	39	1.37
49434120--49434217	37	2.8	36	73	22	102	42	3	3	51	1.33
49434196--49434315	62	1.9	62	81	9	147	39	2	5	53	1.36
49441524--49441573	24	2.1	24	92	0	82	40	4	24	32	1.73
49446788--49446848	25	2.5	24	73	7	59	55	0	9	34	1.33
49446790--49446832	23	1.9	22	90	4	68	55	0	6	37	1.27
49446929--49447004	36	2.1	36	80	11	84	51	1	9	38	1.42
49447863--49447912	24	2.1	24	92	0	82	40	4	24	32	1.73
49457877--49458097	119	1.9	120	85	4	313	26	28	21	24	1.99
49457856--49458099	40	6.1	40	82	6	282	26	27	21	24	1.99
49461147--49461209	30	2.1	30	96	0	117	26	9	12	50	1.71
49464444--49464485	22	1.9	22	95	0	75	33	28	9	28	1.88
49464899--49464927	15	1.9	15	100	0	58	37	41	6	13	1.72
49482966--49483007	22	2.0	21	86	9	59	28	11	4	54	1.57
49483613--49483655	19	2.2	20	83	4	52	32	2	4	60	1.30
49483598--49483658	30	2.0	29	84	12	79	36	1	4	57	1.30
49484662--49484725	26	2.3	29	79	17	73	32	7	0	59	1.26
49488244--49488278	16	2.1	17	89	5	54	42	8	0	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49497747--49497801	11	4.8	12	78	14	55	25	29	0	45	1.54
49497746--49497801	22	2.5	23	82	11	71	25	28	0	46	1.53
49497760--49497859	51	2.0	51	81	0	119	27	25	1	47	1.59
49500343--49500687	51	6.8	51	79	7	344	30	25	15	28	1.96
49500402--49500640	102	2.3	102	94	0	406	30	25	15	27	1.96
49500343--49500687	153	2.3	151	83	4	417	30	25	15	28	1.96
49500353--49500683	102	3.3	101	85	3	391	30	25	14	28	1.95
49503327--49503366	18	2.2	18	90	0	62	20	30	7	42	1.79
49503607--49503653	21	2.2	21	85	7	60	38	38	17	6	1.75
49503921--49504210	21	13.0	21	75	13	204	47	32	1	18	1.56
49503923--49504180	92	2.8	91	84	5	315	48	32	1	18	1.56
49503921--49504210	43	6.4	45	76	13	206	47	32	1	18	1.56
49504001--49504210	43	4.7	43	79	10	217	46	35	0	17	1.52
49507237--49507609	125	3.0	124	85	1	541	30	23	17	29	1.97
49508083--49508125	15	2.8	15	80	16	52	69	0	0	30	0.88
49508086--49508125	16	2.6	15	80	7	53	70	0	0	30	0.88
49508943--49508981	14	2.8	14	84	0	51	35	12	23	28	1.91
49509063--49509129	32	2.1	32	100	0	134	46	14	5	32	1.69
49509188--49509236	24	2.0	24	96	0	89	30	6	4	59	1.41
49509611--49509646	18	1.9	18	88	5	54	58	2	0	38	1.13
49515582--49515637	9	5.9	9	76	23	53	64	1	1	32	1.14
49515592--49515625	9	3.6	10	88	11	54	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49515582--49515625	18	2.4	17	88	11	61	68	0	0	31	0.90
49519623--49519677	28	2.0	28	85	7	76	29	1	5	63	1.27
49520755--49520812	28	2.1	28	83	6	73	58	0	5	36	1.20
49524884--49524940	22	2.6	22	77	0	60	38	8	1	50	1.44
49524902--49524951	26	2.0	25	84	4	64	32	10	2	56	1.44
49527579--49527613	17	2.1	18	89	10	56	48	0	8	42	1.33
49528778--49528816	9	4.3	9	87	12	62	35	0	0	64	0.94
49528837--49528874	18	2.1	18	85	9	51	26	0	2	71	1.00
49534328--49534363	16	2.3	15	86	9	54	36	0	0	63	0.94
49536283--49536316	14	2.4	14	90	0	50	44	2	17	35	1.64
49536300--49536347	21	2.4	20	75	6	53	37	4	10	47	1.57
49542227--49542299	35	2.1	36	82	7	87	50	2	5	41	1.40
49542813--49542861	9	5.3	9	79	11	55	81	0	6	12	0.86
49542813--49542860	19	2.6	18	81	12	62	81	0	6	12	0.87
49543686--49544017	44	7.6	45	69	13	226	28	24	17	29	1.97
49543555--49544524	132	7.4	132	89	3	1348	28	23	18	29	1.98
49543572--49543977	88	4.6	87	66	13	206	28	23	18	29	1.98
49543555--49544524	263	3.7	263	90	2	1412	28	23	18	29	1.98
49543574--49544524	395	2.4	395	87	2	1369	29	23	18	29	1.98
49544503--49544767	44	6.0	44	74	4	237	29	24	16	29	1.96
49544541--49544780	89	2.7	89	81	4	286	29	24	17	29	1.97
49546089--49546127	7	5.6	7	82	11	53	12	5	0	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49547098--49547137	18	2.2	18	91	8	64	65	5	15	15	1.44
49551861--49551909	19	2.6	18	81	9	62	81	0	6	12	0.86
49552965--49553014	20	2.6	17	77	22	55	54	2	0	44	1.11
49553924--49554021	49	2.0	50	84	8	128	31	5	6	57	1.45
49556867--49556898	17	2.0	17	88	11	50	43	0	0	56	0.99
49559192--49559225	18	2.0	17	88	11	52	67	0	5	26	1.13
49559192--49559226	17	2.0	18	88	5	54	68	0	5	25	1.11
49561505--49561535	15	2.1	15	93	0	53	25	9	25	38	1.86
49567134--49567201	13	5.2	13	77	11	68	10	5	8	75	1.20
49567141--49567215	19	3.9	19	81	8	98	10	6	8	74	1.21
49567134--49567218	40	2.1	40	95	0	152	10	5	9	74	1.22
49567145--49567218	9	7.7	9	72	24	62	10	5	9	74	1.21
49570062--49570189	41	3.1	41	89	0	193	22	20	21	35	1.96
49570443--49570480	15	2.5	15	91	0	58	26	2	2	68	1.16
49571086--49571211	62	2.0	62	93	3	218	23	11	8	57	1.61
49574644--49574709	3	22.3	3	90	3	107	31	0	1	66	1.01
49576436--49576470	3	11.7	3	100	0	70	31	0	0	68	0.90
49577012--49577059	20	2.5	20	83	10	64	27	18	10	43	1.82
49579344--49579370	10	2.7	10	100	0	54	88	11	0	0	0.50
49579884--49579919	15	2.5	15	86	4	56	72	0	13	13	1.13
49579887--49579927	7	5.7	7	88	11	57	73	0	14	12	1.11
49579887--49579936	22	2.3	21	87	12	75	72	0	14	14	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49581198--49581474	132	2.1	132	92	0	455	29	18	24	27	1.98
49581269--49581474	44	4.7	44	68	11	134	30	18	24	27	1.98
49581430--49581734	88	3.5	88	80	5	400	29	23	23	23	1.99
49581738--49581916	87	2.1	87	91	0	286	31	22	22	24	1.98
49582152--49582597	43	10.6	43	72	10	292	27	20	23	28	1.99
49582113--49582560	83	5.4	85	72	13	297	26	20	24	28	1.99
49582089--49582689	126	4.8	126	91	1	936	27	20	24	27	1.99
49583954--49584021	3	24.3	3	77	14	74	35	0	1	63	1.04
49595322--49595436	33	3.5	33	90	0	176	33	26	8	32	1.87
49597255--49597295	20	2.0	20	85	0	55	4	14	0	80	0.87
49597268--49597316	16	2.9	16	85	11	55	0	22	0	77	0.77
49597289--49597320	3	11.0	3	93	6	57	0	31	0	68	0.90
49597652--49597826	30	5.9	30	75	7	117	38	4	21	36	1.72
49597923--49602935	76	64.9	75	72	10	2496	33	21	16	29	1.95
49597964--49622068	152	157.0	151	73	10	13987	32	20	16	29	1.95
49600489--49600549	32	1.9	32	93	0	104	19	29	14	36	1.92
49600326--49600695	185	2.0	184	85	1	490	31	23	16	28	1.96
49601661--49601721	32	1.9	32	96	0	113	19	31	14	34	1.92
49601585--49601792	108	1.9	108	81	1	247	30	26	15	27	1.96
49601498--49601830	184	1.8	184	88	1	515	31	22	15	30	1.95
49602836--49603043	108	1.9	108	82	5	260	27	25	16	29	1.97
49602944--49604493	76	20.5	75	78	7	1411	32	21	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49602944--49622772	228	86.6	228	75	9	14396	32	20	17	29	1.95
49604463--49604524	30	2.0	31	96	3	117	25	22	12	38	1.90
49604493--49622068	76	230.1	75	74	9	10724	32	20	17	29	1.95
49614868--49615222	185	1.9	186	83	2	464	33	19	16	30	1.94
49622075--49622772	76	9.1	74	84	4	786	34	19	17	29	1.94
49621908--49622262	194	1.8	195	84	3	482	34	20	16	27	1.94
49631299--49631360	28	2.2	28	88	0	88	3	29	40	27	1.72
49631957--49632143	31	6.2	31	75	9	154	40	3	17	38	1.66
49631969--49632143	30	5.8	30	77	5	165	41	3	17	37	1.67
49631969--49632089	62	2.0	61	88	1	179	38	3	18	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189