genome.fa.s20.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  66  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18412146--18412170	11	2.3	11	100	0	50	48	8	28	16	1.74
18412181--18412236	11	4.9	12	77	18	66	41	1	32	25	1.66
18413065--18413111	24	2.0	23	83	4	58	36	0	10	53	1.36
18414187--18414308	59	2.1	59	100	0	244	55	8	1	34	1.39
18418779--18418816	18	2.1	19	85	5	51	31	0	10	57	1.32
18420835--18420952	41	2.9	41	80	0	128	33	15	26	25	1.95
18422633--18422675	20	2.2	20	91	0	68	27	13	11	46	1.78
18423617--18423940	107	3.0	105	79	6	346	21	16	16	44	1.86
18423588--18423932	27	12.8	26	78	7	289	22	16	17	44	1.87
18428412--18428669	25	10.4	25	71	15	99	36	18	24	20	1.94
18428532--18428653	50	2.4	49	81	11	133	36	20	23	18	1.95
18439083--18439114	14	2.3	14	94	0	55	46	9	6	37	1.61
18439514--18439560	18	2.6	19	77	16	55	42	6	0	51	1.27
18441026--18441077	24	2.2	24	89	0	77	55	9	1	32	1.43
18443368--18443412	23	2.0	23	95	0	81	37	6	0	55	1.26
18443456--18443541	27	3.2	27	80	11	97	30	22	26	20	1.98
18443613--18443681	19	3.7	19	78	7	88	37	8	0	53	1.32
18443618--18443687	36	1.9	37	97	2	133	40	10	0	50	1.36
18443904--18443973	19	3.7	19	82	3	97	37	10	0	52	1.35
18443909--18443979	37	1.9	37	97	0	133	40	9	0	49	1.36
18444251--18444324	19	3.9	19	80	3	87	54	0	9	36	1.33
18444386--18444471	27	3.2	27	80	8	79	19	24	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18444503--18444558	24	2.2	24	78	6	58	53	1	1	42	1.21
18448166--18448199	18	2.0	18	88	11	54	58	5	5	29	1.45
18449763--18449819	11	5.1	11	86	2	78	19	29	1	49	1.58
18449786--18449835	22	2.3	22	86	6	66	24	28	2	46	1.64
18449820--18449853	17	1.9	18	88	5	52	38	23	0	38	1.55
18449808--18449885	40	2.0	40	87	5	113	28	26	0	44	1.54
18451024--18451052	7	4.1	7	100	0	58	27	0	13	58	1.36
18451997--18452043	21	2.2	21	84	0	58	27	44	23	4	1.72
18452936--18452970	18	1.9	18	94	0	61	37	31	8	22	1.85
18453054--18453306	126	2.0	126	100	0	506	36	14	25	24	1.93
18453402--18453459	29	2.0	29	86	6	82	31	1	0	67	1.01
18453412--18453470	29	2.1	29	83	3	75	25	1	5	67	1.20
18457133--18457205	3	24.3	3	77	5	76	30	5	2	61	1.32
18464875--18464899	13	1.9	13	100	0	50	28	0	0	72	0.86
18472819--18472951	66	2.0	66	100	0	266	53	3	16	27	1.58
18473402--18473460	3	20.3	3	77	6	59	64	1	5	28	1.24
18486537--18486580	3	14.7	3	100	0	88	31	0	0	68	0.90
18488433--18488489	21	2.8	20	72	15	53	63	1	0	35	1.05
18488843--18488885	11	4.2	10	80	13	52	30	2	0	67	1.03
18495386--18495431	20	2.4	19	89	7	74	58	0	2	39	1.10
18498856--18498897	9	4.7	9	90	0	57	50	21	4	23	1.68
18499064--18499093	13	2.3	13	100	0	60	16	0	43	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18505549--18505588	20	2.0	20	85	9	55	2	17	25	55	1.55
18506122--18506238	44	2.7	44	76	11	123	23	23	24	28	2.00
18506399--18506941	88	6.2	88	91	1	726	24	23	22	29	1.99
18506488--18506941	175	2.6	176	90	2	720	25	23	22	28	1.99
18508621--18508665	12	3.8	12	80	8	56	11	0	11	77	0.99
18508621--18508676	18	3.2	17	77	7	58	10	1	8	78	1.03
18516455--18516494	20	2.0	20	85	9	55	2	17	25	55	1.55
18517650--18517836	93	2.0	92	89	3	286	26	21	14	37	1.92
18518382--18518421	20	2.0	20	100	0	80	30	30	10	30	1.90
18520041--18520081	22	1.9	22	85	5	57	31	7	14	46	1.72
18522834--18522912	9	9.8	9	66	27	52	69	1	2	26	1.09
18522841--18522911	24	3.1	22	78	9	63	70	1	2	25	1.09
18522841--18522911	16	4.5	15	76	11	72	70	1	2	25	1.09
18529164--18529232	34	2.1	33	84	7	88	52	1	1	44	1.19
18530046--18530079	17	1.9	18	88	5	52	79	0	5	14	0.91
18538503--18538626	62	2.0	62	93	3	214	38	5	23	32	1.78
18541254--18541302	19	2.6	18	81	9	53	24	24	2	48	1.61
18543397--18543462	3	22.0	3	96	0	123	1	0	31	66	1.01
18547950--18547989	15	2.7	15	81	11	55	30	2	7	60	1.38
18550335--18550380	9	4.8	10	77	20	53	21	19	10	47	1.80
18550335--18550380	19	2.4	19	85	7	58	21	19	10	47	1.80
18553695--18553777	6	13.7	6	76	15	73	81	2	12	3	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18553714--18553784	7	10.7	7	77	13	62	81	1	12	4	0.90
18553695--18553784	19	4.8	18	77	15	76	82	2	11	4	0.91
18553711--18553784	25	2.9	26	86	9	100	82	1	12	4	0.87
18553697--18553785	25	3.5	24	79	13	90	80	2	12	4	0.94
18554749--18554925	86	2.0	87	84	5	234	26	23	25	24	2.00
18555080--18555163	44	1.9	44	90	0	132	25	20	22	32	1.98
18554944--18555298	176	2.0	175	86	5	500	25	20	23	30	1.98
18555300--18555475	44	4.0	44	69	7	126	30	20	25	24	1.99
18555107--18555490	130	2.9	131	87	3	488	26	20	25	28	1.99
18555259--18555439	43	4.2	43	68	4	112	27	19	25	27	1.99
18554873--18555450	308	1.9	307	88	2	865	26	19	24	28	1.99
18560879--18561099	88	2.5	88	85	1	291	32	25	19	22	1.98
18560879--18561146	88	3.0	88	82	1	241	30	25	20	23	1.98
18561115--18561488	44	8.6	44	80	8	410	28	18	25	28	1.98
18561115--18561488	126	2.9	131	83	7	467	28	18	25	28	1.98
18561115--18561488	170	2.2	173	85	6	492	28	18	25	28	1.98
18561156--18561552	126	3.1	132	81	7	343	28	19	24	27	1.99
18561795--18561910	44	2.7	43	80	9	119	31	18	21	28	1.97
18563353--18563424	3	24.0	3	94	0	126	2	0	30	66	1.06
18565199--18565238	17	2.3	18	83	12	57	47	5	7	40	1.54
18575344--18575433	27	3.4	26	72	17	71	66	1	5	26	1.20
18575389--18575433	19	2.4	20	75	14	51	64	0	8	26	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18575837--18575897	20	3.2	19	80	13	63	34	0	4	60	1.18
18577164--18577251	39	2.2	40	82	8	108	21	25	23	29	1.99
18577598--18577654	28	2.0	28	83	6	71	28	10	10	50	1.69
18577839--18577904	21	3.3	19	77	12	69	65	4	3	27	1.27
18580599--18580637	20	2.0	20	85	10	53	61	5	2	30	1.31
18585500--18585537	20	2.0	20	89	5	60	28	0	31	39	1.57
18586053--18586157	32	3.3	32	81	5	131	42	8	8	40	1.66
18598408--18598473	31	2.1	31	94	0	114	31	21	9	37	1.85
18605689--18605763	36	2.1	36	82	9	91	58	1	2	37	1.20
18608396--18608540	23	6.3	23	90	0	236	31	26	22	20	1.98
18614585--18614611	13	2.1	13	100	0	54	48	0	14	37	1.45
18614821--18614870	24	2.1	24	84	0	64	52	4	8	36	1.50
18614902--18614931	14	2.1	14	100	0	60	73	0	6	20	1.05
18615479--18615509	3	10.3	3	100	0	62	32	0	0	67	0.91
18615906--18615987	23	3.8	21	78	13	87	18	21	20	39	1.93
18622318--18622383	34	1.9	34	87	6	98	46	21	12	19	1.82
18627957--18627983	14	1.9	14	100	0	54	7	22	22	48	1.75
18627941--18628059	59	2.0	59	98	0	229	14	16	17	51	1.77
18628016--18628042	14	1.9	14	100	0	54	7	22	22	48	1.75
18628169--18628290	47	2.6	47	96	0	217	22	9	9	58	1.59
18628273--18628302	12	2.5	12	94	0	51	23	6	13	56	1.60
18639571--18639602	16	2.0	16	100	0	64	18	6	6	68	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18642151--18642205	27	2.0	28	96	3	103	58	9	0	32	1.30
18642254--18642347	27	3.5	27	88	2	127	25	28	28	17	1.97
18642479--18642517	19	2.0	21	85	10	55	23	0	10	66	1.22
18642563--18642621	3	19.3	3	92	3	100	32	0	3	64	1.10
18642620--18642657	3	12.7	3	100	0	76	0	0	31	68	0.90
18642847--18642899	26	2.0	26	88	0	79	37	3	7	50	1.49
18642905--18642935	12	2.6	12	94	0	53	19	0	19	61	1.35
18643485--18643529	18	2.5	18	81	0	63	28	8	48	13	1.72
18649170--18649207	14	2.8	13	88	7	58	71	5	0	23	1.07
18649263--18649467	38	5.4	37	75	17	133	0	33	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189