genome.fa.s20.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  122  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34489588--34489736	39	3.8	39	82	7	185	42	14	28	14	1.86
34489583--34489748	59	2.8	59	84	0	215	43	15	26	15	1.85
34489606--34489748	20	7.3	19	76	12	128	42	14	27	15	1.86
34501977--34502417	27	16.4	27	86	4	570	44	19	18	17	1.87
34502770--34502833	28	2.3	28	83	2	76	20	21	23	34	1.97
34502795--34502865	33	2.1	34	86	2	99	25	23	21	29	1.99
34504821--34505045	40	5.7	40	80	7	217	25	21	28	24	1.99
34504901--34505078	79	2.2	80	80	5	184	26	21	28	24	1.99
34509809--34509867	27	2.2	27	84	6	75	28	30	10	30	1.90
34518007--34518055	25	2.0	25	84	8	64	36	8	6	48	1.58
34528256--34528318	24	2.6	24	85	5	74	19	25	20	34	1.96
34528256--34528358	25	4.2	25	81	5	75	22	26	19	32	1.97
34532964--34533020	29	2.1	26	87	9	78	28	5	3	63	1.33
34533344--34533371	3	9.3	3	100	0	56	67	0	32	0	0.91
34534143--34534185	3	14.3	3	100	0	86	32	32	0	34	1.58
34534333--34534401	30	2.3	30	80	7	77	21	10	21	46	1.81
34537426--34537473	3	16.0	3	100	0	96	66	0	0	33	0.92
34565996--34566088	43	2.2	43	84	3	116	31	31	17	20	1.95
34571835--34571992	43	3.7	42	75	6	138	30	25	15	29	1.96
34578118--34578365	30	8.3	29	82	5	185	34	14	28	22	1.93
34578144--34578396	60	4.3	59	78	9	237	33	13	27	24	1.93
34578168--34578396	30	7.7	29	80	8	171	34	13	27	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34589826--34590084	27	9.7	27	81	5	303	40	20	16	22	1.90
34589826--34590084	53	4.9	53	83	6	310	40	20	16	22	1.90
34615564--34615691	64	2.0	64	92	0	211	39	23	7	29	1.81
34622960--34623084	64	2.0	64	96	0	232	40	24	6	28	1.80
34626655--34626755	52	1.9	52	97	0	193	25	18	22	32	1.97
34633162--34633262	52	1.9	52	95	0	184	26	18	21	32	1.97
34654068--34654189	44	2.8	43	79	12	149	25	18	27	28	1.98
34661758--34662976	132	9.2	132	95	0	2132	28	23	18	28	1.98
34662569--34662888	44	7.3	44	65	16	133	28	23	18	29	1.97
34671180--34671225	24	1.9	24	86	8	67	10	28	17	43	1.82
34674156--34674204	23	2.0	23	85	14	64	32	0	0	67	0.91
34674148--34674195	23	2.1	23	84	7	62	29	2	0	68	1.01
34680353--34680383	7	4.4	7	100	0	62	25	0	0	74	0.82
34686371--34686867	264	1.9	264	90	0	805	37	20	6	35	1.79
34693241--34693769	265	2.0	265	95	1	945	41	16	12	28	1.85
34693767--34693824	28	2.1	28	93	3	100	29	24	24	22	1.99
34693774--34693832	28	2.1	28	96	0	109	30	20	23	25	1.98
34693935--34694041	26	4.1	26	91	0	169	37	24	19	18	1.94
34694206--34694319	27	4.2	27	83	0	147	20	16	19	43	1.88
34702011--34702153	27	5.3	27	83	5	164	23	18	17	41	1.90
34704220--34704289	35	2.0	35	100	0	140	20	22	14	42	1.88
34713002--34713159	71	2.2	71	78	2	174	17	18	29	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34717161--34717223	26	2.4	25	75	19	74	61	0	31	6	1.21
34720235--34720315	28	2.9	28	90	0	135	55	8	7	28	1.57
34723273--34723330	31	1.9	31	89	3	91	13	32	22	31	1.93
34723821--34723874	25	2.2	25	83	6	65	24	12	44	18	1.85
34725371--34725424	26	2.1	26	85	0	72	24	18	24	33	1.97
34727523--34727573	25	2.0	25	96	0	93	35	17	13	33	1.89
34734013--34734121	35	3.0	37	76	10	125	30	33	6	30	1.83
34735131--34735180	21	2.5	20	84	9	68	54	0	12	34	1.38
34746412--34746465	21	2.6	21	96	0	99	59	7	12	20	1.58
34753907--34753957	24	2.1	24	92	0	84	33	5	5	54	1.48
34757594--34757755	7	22.7	7	71	10	60	46	30	1	22	1.60
34757595--34757755	21	7.5	22	71	13	95	46	30	1	21	1.59
34757709--34757760	14	3.7	14	86	0	68	48	28	0	23	1.51
34758200--34758364	40	4.1	40	78	8	149	26	20	20	33	1.97
34765327--34765545	27	8.3	27	75	8	135	29	24	15	31	1.95
34765359--34765546	81	2.3	80	81	4	209	29	22	15	31	1.95
34768286--34769607	449	2.9	448	94	0	2349	29	16	18	36	1.92
34775830--34776696	447	1.9	447	94	0	1538	29	16	18	35	1.93
34777540--34783738	814	7.5	814	74	12	5449	31	18	18	32	1.94
34779168--34780036	448	1.9	448	94	0	1540	29	16	18	36	1.92
34783321--34784185	448	1.9	448	94	0	1507	28	16	18	36	1.92
34784580--34785895	446	2.9	448	93	1	2275	29	16	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34788811--34789683	448	1.9	448	95	0	1568	28	16	18	36	1.93
34790072--34790939	448	1.9	448	94	0	1538	29	16	18	36	1.92
34791335--34792652	447	2.9	448	93	1	2291	29	16	17	36	1.92
34794302--34795174	448	1.9	448	97	0	1656	28	16	18	36	1.92
34796011--34798064	815	2.5	815	96	0	3770	30	18	18	32	1.95
34797641--34798511	447	1.9	447	95	0	1575	29	16	18	35	1.93
34798902--34800221	447	2.9	448	95	0	2381	29	16	18	36	1.92
34799797--34801849	814	2.5	814	96	0	3748	30	18	18	32	1.95
34801873--34804742	815	3.5	815	96	0	5238	31	18	18	32	1.95
34804318--34805190	448	1.9	448	92	1	1482	29	16	17	36	1.92
34804766--34806821	815	2.5	815	94	0	3621	30	17	18	32	1.94
34806396--34808165	448	3.9	448	96	0	3198	28	16	17	36	1.92
34808556--34810771	448	4.9	448	97	0	4083	28	16	17	36	1.92
34808556--34810771	895	2.5	895	97	0	4162	28	16	17	36	1.92
34810347--34816716	814	7.5	815	76	12	5340	30	17	18	34	1.94
34811976--34814191	448	4.9	448	97	0	4119	28	16	18	36	1.92
34811976--34814191	895	2.5	895	97	0	4198	28	16	18	36	1.92
34814581--34815901	448	2.9	448	96	0	2446	28	16	18	36	1.92
34816292--34817660	448	3.1	448	95	0	2495	28	15	17	37	1.91
34821916--34821976	24	2.5	24	71	23	65	49	0	44	6	1.28
34830330--34830432	53	1.9	53	92	0	170	49	13	4	32	1.63
34834394--34834494	26	3.9	26	84	2	123	39	10	19	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34834394--34834494	51	2.0	52	86	5	143	39	10	19	29	1.86
34838381--34838421	21	2.0	21	90	0	64	31	9	34	24	1.88
34838386--34838433	21	2.3	21	82	7	62	35	16	29	18	1.93
34840205--34840247	22	2.0	22	82	17	54	51	25	6	16	1.69
34852986--34853141	76	2.1	76	92	0	258	29	16	18	35	1.93
34859572--34859730	41	3.9	41	82	4	187	38	24	19	16	1.92
34869621--34869658	18	2.1	19	90	5	60	42	5	5	47	1.48
34870683--34870717	12	2.8	12	91	4	52	8	28	40	22	1.84
34874198--34874356	41	3.9	41	85	1	196	35	13	28	21	1.92
34874202--34874352	82	1.9	80	88	2	230	35	12	29	22	1.91
34876185--34876218	17	2.0	17	100	0	68	29	23	11	35	1.90
34878272--34878307	18	2.0	18	88	0	54	27	13	0	58	1.36
34880722--34880911	40	4.8	40	88	5	235	25	31	21	22	1.98
34886889--34886949	19	3.1	19	71	26	54	63	0	31	4	1.15
34886884--34886964	42	1.9	43	85	7	112	64	0	32	3	1.11
34889208--34889240	14	2.4	14	94	0	57	60	9	6	24	1.49
34889221--34889312	28	3.3	28	86	6	125	54	6	6	32	1.52
34889904--34890170	51	5.3	51	93	0	437	28	23	16	31	1.96
34891592--34891626	17	2.1	17	100	0	70	54	11	5	28	1.59
34898017--34898060	3	14.7	3	95	0	79	31	0	2	65	1.05
34898420--34898515	39	2.5	39	80	6	108	20	23	28	27	1.99
34910169--34910202	14	2.3	15	95	5	61	44	2	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34911133--34911170	6	6.3	6	82	11	51	15	0	2	81	0.80
34918462--34918508	23	2.0	23	91	0	76	27	10	10	51	1.70
34926270--34926492	79	2.8	79	83	8	283	25	27	22	24	2.00
34926270--34926492	40	5.7	40	86	7	271	25	27	22	24	2.00
34937301--34937370	27	2.6	27	88	0	95	30	14	28	27	1.95
34942880--34943102	40	5.7	40	87	6	271	25	27	22	24	2.00
34942880--34943102	117	1.9	120	83	8	296	25	27	22	24	2.00
34949556--34949593	17	2.2	17	90	0	58	34	36	7	21	1.82
34951344--34951382	19	2.0	19	85	5	51	30	5	12	51	1.62
34968723--34968760	19	2.0	19	85	10	51	21	42	0	36	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189