genome.fa.s20.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  56  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15906210--15906339	43	3.0	43	78	18	162	31	27	17	23	1.97
15908655--15908702	23	2.0	25	84	15	66	10	29	4	56	1.52
15917636--15917674	7	5.3	7	82	11	51	23	0	2	74	0.94
15917636--15917682	23	2.0	23	91	0	76	19	2	2	76	0.99
15917651--15917708	14	4.1	14	77	6	55	15	6	0	77	0.97
15922390--15922611	23	9.7	23	91	1	347	27	7	21	43	1.78
15922613--15922776	25	6.7	25	77	10	178	43	14	0	40	1.50
15922663--15922845	71	2.6	72	93	2	307	45	13	0	40	1.47
15922851--15922880	9	3.3	9	90	0	51	50	3	0	46	1.18
15923287--15923326	18	2.2	18	90	0	62	45	5	27	22	1.73
15925114--15925237	51	2.4	51	88	5	180	44	1	24	29	1.63
15925220--15925264	11	4.0	11	83	11	56	51	2	31	15	1.56
15925856--15925969	55	2.1	55	100	0	228	31	12	7	48	1.69
15926247--15926283	2	18.5	2	94	0	65	51	2	0	45	1.15
15929709--15929830	51	2.4	50	78	14	126	55	5	5	32	1.47
15929760--15929790	15	2.1	14	94	5	53	51	6	0	41	1.27
15930089--15930128	3	13.3	3	84	10	55	67	0	0	32	0.91
15930091--15930142	12	4.1	12	81	16	52	69	1	0	28	0.99
15930546--15930621	22	3.5	22	79	15	77	40	15	5	38	1.70
15930543--15930600	22	2.6	22	86	7	82	41	17	3	37	1.66
15930556--15930653	19	4.8	19	82	9	88	39	17	6	36	1.74
15930590--15930652	21	3.1	21	86	9	94	39	15	6	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15931498--15931535	2	19.5	2	94	5	69	50	0	0	50	1.00
15937452--15937492	19	2.1	20	86	4	57	51	2	14	31	1.56
15939248--15939526	27	10.3	26	80	6	279	42	19	17	21	1.89
15941154--15941187	17	1.9	18	88	5	52	35	5	11	47	1.65
15947166--15947204	19	2.0	20	90	5	62	46	5	5	43	1.48
15947169--15947212	19	2.3	19	84	7	54	47	2	6	43	1.42
15947309--15947356	15	3.0	15	75	24	53	72	0	27	0	0.84
15948238--15948336	41	2.5	40	83	1	117	28	16	23	32	1.96
15948657--15948694	17	2.2	18	90	4	60	34	5	13	47	1.65
15961878--15961932	27	2.0	29	89	7	87	45	7	1	45	1.41
15962429--15962483	18	3.0	18	81	2	56	52	1	3	41	1.29
15962504--15962538	16	2.2	16	94	0	61	71	0	2	25	1.00
15969675--15969807	70	1.9	69	86	4	189	33	14	10	41	1.80
15970175--15970209	15	2.2	16	95	5	63	40	0	0	60	0.97
15972341--15972468	27	4.7	27	87	0	166	42	18	20	18	1.90
15972352--15972495	54	2.7	54	82	6	166	41	20	19	18	1.90
15972351--15972496	27	5.4	27	84	1	105	41	20	19	18	1.91
15972341--15972501	81	2.0	82	81	3	191	41	20	19	18	1.90
15978057--15978169	38	3.0	38	80	0	118	18	15	28	38	1.91
15979756--15979788	12	2.8	12	95	0	57	6	21	45	27	1.75
15979756--15979811	24	2.3	24	84	0	67	10	23	39	26	1.87
15982716--15982756	20	2.0	20	100	0	82	39	0	4	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15982718--15982762	20	2.2	20	92	0	72	40	0	11	48	1.39
15984263--15984383	41	3.0	41	83	0	152	19	21	26	33	1.97
15997787--15997877	37	2.4	36	82	13	105	38	3	4	53	1.37
15997790--15997862	29	2.7	25	70	24	58	38	2	2	56	1.28
15997804--15998000	67	3.0	66	70	11	179	41	3	4	51	1.38
16008600--16008827	114	2.0	114	100	0	456	28	21	18	31	1.97
16013680--16013730	10	4.9	11	76	11	54	31	0	0	68	0.90
16013667--16013730	30	2.1	31	94	2	112	34	0	0	65	0.93
16014811--16014835	7	3.6	7	100	0	50	28	0	12	60	1.32
16015487--16015539	18	2.9	18	94	0	88	26	35	7	30	1.84
16015798--16015853	24	2.3	24	87	0	85	42	32	23	1	1.64
16016083--16017130	28	36.6	28	90	2	1477	50	23	0	25	1.53
16016083--16017130	85	12.2	85	92	2	1661	50	23	0	25	1.53
16016081--16017130	342	3.1	341	91	2	1687	50	23	0	25	1.53
16017128--16017184	26	2.2	26	100	0	114	26	7	7	59	1.49
16018111--16018448	126	2.7	124	93	0	586	33	21	14	30	1.93
16019340--16019379	20	2.0	20	90	0	62	27	10	12	50	1.72
16019325--16019391	34	1.9	35	90	3	109	31	8	13	46	1.74
16019319--16019395	14	5.0	15	71	20	52	32	9	15	42	1.78
16021162--16021191	14	2.1	14	93	0	51	36	10	43	10	1.72
16021202--16021268	33	2.0	33	91	0	107	38	1	44	14	1.55
16021660--16021725	33	2.0	33	93	0	114	37	3	45	13	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16020952--16021857	457	2.0	458	96	0	1679	38	15	23	22	1.92
16022685--16022710	11	2.4	11	100	0	52	23	0	0	76	0.78
16024508--16024550	18	2.4	18	84	0	50	20	25	9	44	1.81
16024929--16025098	49	3.5	49	92	0	277	42	2	8	45	1.50
16028185--16028596	125	3.3	124	88	0	599	31	19	16	32	1.94
16028774--16028799	6	4.3	6	100	0	52	38	46	0	15	1.46
16029171--16029220	24	2.1	24	100	0	100	40	8	4	48	1.51
16030246--16030281	19	1.9	18	94	5	63	44	11	19	25	1.83
16033228--16033274	22	2.1	22	81	14	53	6	12	14	65	1.44
16036688--16036718	15	2.1	15	100	0	62	35	6	12	45	1.68
16038293--16038319	11	2.5	11	100	0	54	22	7	18	51	1.70
16039717--16040168	120	3.8	120	94	2	739	42	2	6	49	1.41
16039882--16039933	15	3.6	15	80	12	56	44	0	1	53	1.11
16040001--16040052	15	3.6	15	80	12	56	44	0	1	53	1.11
16039717--16040168	239	1.9	241	91	2	741	42	2	6	49	1.41
16040299--16040403	44	2.5	40	75	18	106	31	28	3	36	1.75
16040385--16040454	16	4.4	16	88	0	104	30	35	1	32	1.67
16040385--16040454	32	2.2	32	94	0	122	30	35	1	32	1.67
16041716--16041917	67	3.1	65	76	11	225	44	16	8	30	1.78
16041716--16041904	61	3.0	61	80	7	191	44	17	8	29	1.78
16043379--16043624	126	2.0	126	95	0	447	45	14	9	30	1.76
16045614--16045658	23	2.0	23	81	0	54	20	2	15	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16045808--16045854	23	2.0	23	84	8	60	38	2	0	59	1.09
16046119--16046162	23	2.0	22	90	4	70	34	6	2	56	1.38
16047652--16047680	6	4.8	6	100	0	58	0	68	0	31	0.89
16051213--16051505	120	2.4	120	94	2	500	41	3	4	50	1.39
16051338--16051379	15	2.9	15	82	10	52	47	0	0	52	1.00
16051467--16051508	15	2.7	16	82	14	52	45	0	2	52	1.13
16051458--16051499	15	2.9	15	82	10	52	47	0	0	52	1.00
16051442--16051758	157	2.0	157	94	1	555	47	5	3	43	1.41
16051810--16051900	45	2.0	45	85	2	121	37	28	6	27	1.82
16051881--16051949	16	4.2	16	96	3	129	37	37	0	24	1.56
16051881--16051949	33	2.1	32	97	2	129	37	37	0	24	1.56
16056679--16056818	58	2.4	57	84	4	174	44	0	3	51	1.24
16064000--16064034	17	2.1	17	88	0	52	60	5	2	31	1.35
16070392--16070431	3	13.0	3	94	5	71	67	0	0	32	0.91
16074747--16074771	3	8.3	3	100	0	50	0	32	0	68	0.90
16080664--16080827	78	2.1	78	96	0	301	43	17	9	29	1.80
16082121--16082239	25	4.8	24	76	7	96	35	21	21	21	1.96
16082116--16082213	50	2.0	50	85	4	135	30	23	22	23	1.99
16082116--16082291	25	7.1	25	72	13	85	34	21	22	22	1.97
16082652--16082693	21	2.0	21	85	0	57	42	23	0	33	1.55
16085285--16085366	26	3.3	26	81	5	98	32	23	26	17	1.96
16085296--16085381	26	3.3	26	79	10	88	31	23	29	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16093324--16093364	16	2.5	17	80	11	50	29	0	2	68	1.03
16093326--16093379	18	3.1	17	77	20	58	29	0	3	66	1.09
16093384--16093425	17	2.5	16	81	11	57	38	0	0	61	0.96
16093339--16093432	18	5.0	19	71	18	65	32	0	2	64	1.05
16093604--16093654	18	2.8	19	82	8	54	31	0	0	68	0.90
16099615--16099678	30	2.1	30	85	0	83	34	10	20	34	1.88
16108287--16108341	18	2.8	20	82	17	62	34	1	7	56	1.38
16116171--16116204	17	2.0	17	88	0	50	41	14	2	41	1.61
16116713--16116740	2	14.0	2	100	0	56	50	0	0	50	1.00
16120575--16120608	15	2.3	15	100	0	68	32	17	5	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189