genome.fa.s20.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  41  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12219940--12220041	21	4.9	21	83	0	114	36	18	41	3	1.69
12220372--12220611	43	5.6	43	77	3	178	23	18	30	27	1.98
12220391--12220613	86	2.6	86	84	5	299	23	18	30	27	1.97
12221467--12221514	3	16.3	3	82	4	53	58	0	2	39	1.10
12225083--12225140	28	2.1	28	83	6	73	44	6	17	31	1.75
12227007--12227045	15	2.6	15	88	8	53	35	17	17	28	1.94
12227057--12227102	18	2.8	17	80	9	51	32	6	21	39	1.79
12230999--12231063	18	3.6	17	73	19	53	67	6	6	20	1.34
12232608--12232652	23	2.0	23	86	8	65	4	17	44	33	1.69
12232860--12233398	100	5.4	99	93	2	893	21	20	25	31	1.98
12232865--12233398	198	2.7	198	94	0	935	21	20	25	32	1.98
12232909--12233387	50	9.7	50	71	12	369	20	21	26	31	1.98
12241484--12241510	14	1.9	14	100	0	54	14	7	3	74	1.18
12244319--12244359	21	2.0	21	90	0	64	29	21	29	19	1.98
12250065--12250235	66	2.6	65	85	6	220	40	18	28	12	1.88
12250217--12250318	21	4.9	21	80	0	105	35	17	42	4	1.71
12250670--12250975	43	7.1	43	73	5	226	23	19	29	27	1.98
12250670--12250976	86	3.6	85	78	7	291	23	19	29	27	1.99
12251661--12251711	3	17.3	3	83	4	59	58	0	1	39	1.09
12253089--12253564	50	9.5	50	64	7	212	24	25	21	28	1.99
12253015--12253572	100	5.6	100	86	3	764	24	25	20	28	1.99
12253428--12253581	50	3.1	50	66	5	123	24	24	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12254982--12255031	14	3.5	14	82	17	59	14	12	0	74	1.09
12254982--12255031	7	7.0	7	75	20	50	14	12	0	74	1.09
12261477--12261525	25	2.0	24	88	4	71	2	34	0	63	1.06
12262475--12262550	23	3.4	22	70	5	71	21	21	21	36	1.95
12263522--12263805	100	2.9	97	77	11	292	42	3	5	47	1.45
12263748--12263805	28	2.0	29	86	3	82	34	1	8	55	1.41
12275974--12276015	17	2.6	17	81	7	52	35	2	16	45	1.61
12277585--12277624	16	2.5	16	83	0	53	60	0	5	35	1.19
12277526--12277641	41	2.9	38	78	13	115	53	2	5	38	1.37
12278942--12278974	8	4.1	8	100	0	66	36	0	39	24	1.56
12291562--12291758	97	2.0	97	95	0	349	37	22	18	22	1.94
12292407--12292657	74	3.5	73	84	9	327	33	19	21	25	1.97
12292449--12292648	35	5.6	34	68	19	106	33	19	21	26	1.97
12294130--12294189	30	2.0	31	87	9	88	41	0	36	21	1.54
12294372--12294396	9	2.8	9	100	0	50	32	12	12	44	1.78
12294894--12294930	7	5.4	7	81	18	51	54	0	0	45	1.00
12298094--12298305	74	2.8	76	77	7	180	34	20	21	23	1.96
12298135--12298347	40	5.6	39	78	8	217	35	20	20	23	1.96
12301215--12301416	27	7.6	27	75	7	171	36	17	21	25	1.95
12301256--12301417	81	2.0	81	87	2	236	33	16	22	27	1.95
12301242--12301430	27	7.1	27	78	2	177	34	16	22	26	1.95
12301480--12301526	24	1.9	25	91	4	78	17	8	25	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12301705--12301942	32	7.5	32	77	6	146	21	20	21	36	1.95
12305969--12306000	16	2.0	16	100	0	64	43	12	0	43	1.42
12319923--12319984	11	5.7	11	76	3	54	72	12	9	4	1.25
12319937--12319983	21	2.2	21	92	0	76	72	10	10	6	1.28
12319948--12319990	21	2.0	21	90	0	68	69	18	6	4	1.29
12322420--12322465	23	2.0	22	84	12	58	47	21	0	30	1.51
12327250--12327300	18	2.8	18	81	0	66	41	1	17	39	1.61
12330588--12331022	27	16.2	27	76	4	326	41	18	15	24	1.90
12330732--12330941	80	2.6	81	84	3	237	41	17	16	24	1.89
12330960--12331038	27	2.9	27	84	3	88	37	24	17	20	1.93
12331227--12331295	26	2.7	26	86	0	102	10	24	28	36	1.88
12331407--12331524	30	4.1	28	78	8	128	22	23	22	30	1.99
12340045--12340076	15	2.0	17	88	11	50	43	0	6	50	1.27
12340760--12340801	23	1.9	23	85	9	61	57	0	4	38	1.20
12340835--12340880	14	3.4	14	82	17	62	76	0	23	0	0.79
12340832--12340880	22	2.2	23	88	3	73	75	0	24	0	0.80
12343155--12343248	49	1.9	49	93	0	161	43	8	24	23	1.81
12343866--12343910	16	2.8	16	82	3	54	53	0	0	46	1.00
12343968--12344002	13	2.5	14	90	9	54	42	2	0	54	1.15
12345746--12345781	10	3.5	10	88	3	54	36	41	2	19	1.66
12350520--12350560	3	13.7	3	100	0	82	31	0	0	68	0.90
12361823--12362066	45	5.5	45	73	2	224	32	20	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12361739--12361982	133	1.8	133	83	2	328	30	20	24	25	1.98
12361820--12362086	88	3.0	88	92	2	410	31	19	24	24	1.98
12361747--12362026	45	6.3	43	71	5	148	29	20	24	26	1.99
12361820--12362101	89	3.2	89	90	2	415	32	19	24	23	1.97
12361739--12362176	222	2.0	222	80	3	488	30	19	23	26	1.98
12363030--12363055	7	3.7	7	100	0	52	88	11	0	0	0.52
12363743--12363800	25	2.3	25	100	0	116	6	37	22	32	1.81
12365771--12365835	20	3.5	20	67	16	57	32	4	1	61	1.26
12365818--12365847	15	1.9	16	93	6	53	40	0	6	53	1.27
12365958--12365988	2	15.5	2	100	0	62	51	0	0	48	1.00
12366667--12366726	21	3.0	20	80	7	59	33	6	5	55	1.48
12369100--12369136	15	2.5	15	86	0	56	13	37	0	48	1.43
12370408--12370674	72	3.7	72	81	5	263	35	12	23	27	1.92
12370409--12370756	72	4.8	72	77	6	227	37	11	24	26	1.90
12372358--12372402	24	1.9	23	81	4	54	51	0	0	48	1.00
12372452--12372520	27	2.6	27	76	4	86	20	21	36	21	1.95
12372577--12372625	18	2.6	18	87	9	62	71	2	24	2	1.07
12375597--12375663	27	2.4	27	92	2	116	53	8	0	37	1.32
12377733--12377813	37	2.2	38	97	2	155	40	2	2	54	1.27
12377847--12377968	60	2.0	60	85	6	167	54	13	0	31	1.45
12377991--12378079	21	4.0	21	64	24	56	52	12	1	33	1.46
12377956--12378080	48	2.5	48	87	3	187	54	12	0	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12378120--12378183	19	3.2	19	85	12	92	56	12	0	31	1.37
12378115--12378181	22	3.2	22	83	12	95	59	11	0	28	1.33
12378250--12378275	12	2.2	12	100	0	52	46	15	0	38	1.46
12378349--12378381	3	11.3	3	87	6	50	0	36	0	63	0.95
12378353--12378389	14	2.6	14	91	0	56	0	40	0	59	0.97
12378345--12378381	17	2.2	16	90	4	56	0	35	0	64	0.94
12378737--12378792	29	1.9	29	85	0	76	23	12	5	58	1.54
12378733--12378799	29	2.3	28	77	7	71	23	10	8	56	1.61
12379969--12379998	3	10.0	3	92	0	51	3	30	33	33	1.74
12384400--12384461	16	3.8	17	76	4	56	37	8	6	48	1.59
12384681--12384742	13	4.8	13	76	4	63	41	8	12	37	1.73
12386599--12386647	24	2.0	24	92	0	80	42	28	4	24	1.73
12394135--12394183	23	2.3	21	80	20	57	65	0	6	28	1.16
12394151--12394180	14	2.1	15	93	6	53	66	0	6	26	1.16
12394176--12394296	27	4.3	27	66	25	72	65	2	10	21	1.36
12394279--12394329	14	3.8	13	79	20	61	68	0	7	23	1.15
12396226--12396786	44	12.2	44	73	10	351	28	21	17	32	1.96
12396239--12396405	45	3.7	45	80	4	194	29	23	16	30	1.96
12399414--12399582	84	2.0	84	95	0	302	24	28	14	33	1.94
12401270--12401307	15	2.5	15	95	0	67	5	34	5	55	1.45
12402443--12402538	31	3.1	31	95	3	174	45	13	9	31	1.75
12407054--12407159	10	10.8	10	67	22	64	2	18	12	66	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12407063--12407165	40	2.6	39	80	18	131	2	18	10	67	1.32
12407113--12407191	8	8.8	8	78	14	59	3	13	11	70	1.28
12407104--12407192	9	9.6	9	74	16	60	3	13	12	70	1.28
12407734--12407829	31	3.1	31	95	3	174	45	13	9	31	1.75
12408934--12408982	23	2.3	21	80	20	57	65	0	6	28	1.16
12408950--12408984	15	2.3	15	90	9	54	65	0	5	28	1.15
12408950--12409053	26	4.1	25	75	15	90	64	1	10	23	1.35
12409048--12409194	4	36.5	4	70	8	84	65	3	7	23	1.33
12409741--12409800	24	2.5	24	94	2	102	41	5	0	53	1.23
12410358--12410390	17	2.0	17	88	5	50	12	0	9	78	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189