genome.fa.s20.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  148  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44906666--44907231	282	2.0	282	98	0	1105	36	16	26	20	1.93
44915791--44917074	44	29.3	45	75	5	1013	27	15	26	29	1.96
44915791--44917031	219	5.7	219	90	1	1828	27	15	26	29	1.96
44918764--44918794	15	2.1	15	93	0	53	32	9	0	58	1.31
44919553--44919959	107	3.8	106	88	1	577	31	18	18	31	1.95
44926031--44926073	21	2.0	22	90	4	70	65	0	0	34	0.93
44930422--44930479	20	2.8	21	74	10	66	60	0	1	37	1.07
44930407--44930460	18	3.1	18	82	10	60	64	0	0	35	0.94
44930923--44931051	60	2.1	61	82	5	163	41	14	5	38	1.69
44930938--44931053	60	1.9	60	89	3	180	38	13	5	42	1.67
44931046--44931090	20	2.2	21	80	11	58	60	2	2	35	1.22
44933175--44933300	55	2.2	57	79	10	134	47	7	16	27	1.74
44935560--44935607	17	2.8	17	93	0	78	47	2	6	43	1.40
44939626--44939668	22	1.9	22	85	4	59	62	6	0	30	1.21
44948097--44948209	51	2.2	49	83	9	131	56	6	5	31	1.46
44948466--44948503	12	2.8	13	88	11	51	65	0	0	34	0.93
44948482--44948515	15	2.3	15	89	0	50	70	2	0	26	1.01
44948725--44948763	19	2.0	21	85	10	55	69	5	10	15	1.34
44948925--44949022	21	4.7	21	77	14	69	40	16	5	37	1.70
44948925--44948982	22	2.6	22	81	7	64	43	17	1	37	1.59
44948961--44949035	19	3.8	19	87	6	105	37	16	9	37	1.80
44948972--44949034	21	3.1	21	90	9	112	38	14	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44949877--44950252	44	8.7	43	82	6	408	28	25	18	27	1.98
44949923--44950252	170	1.9	170	87	3	477	29	25	17	28	1.97
44949877--44950212	126	2.6	126	87	4	460	27	25	18	27	1.98
44950252--44950521	88	3.1	88	86	0	369	20	24	28	26	1.99
44953719--44953757	19	2.0	21	85	10	55	69	5	10	15	1.34
44953917--44953995	22	3.7	21	74	16	63	41	16	3	37	1.66
44953917--44953974	22	2.6	22	81	7	64	43	17	1	37	1.59
44953953--44954008	21	2.8	19	82	10	76	37	16	8	37	1.80
44953964--44954007	21	2.1	21	100	0	88	38	13	9	38	1.77
44958377--44958444	23	3.0	23	70	20	70	35	7	13	44	1.71
44960130--44960485	114	3.1	114	88	1	518	26	21	17	34	1.96
44961221--44961254	17	2.0	17	88	11	52	23	0	0	76	0.79
44961218--44961278	22	2.8	21	80	7	68	24	1	1	72	1.03
44961378--44961447	36	1.9	36	85	8	97	55	1	0	42	1.08
44961400--44961457	19	3.1	19	76	16	59	60	0	0	39	0.97
44965024--44965086	25	2.6	25	92	2	101	25	22	38	14	1.92
44968861--44969054	51	3.8	51	82	2	264	30	28	16	24	1.97
44968869--44969056	102	1.8	102	96	0	349	30	28	16	25	1.97
44971870--44971933	32	1.9	33	84	12	87	28	25	34	12	1.92
44972973--44973759	46	17.1	46	90	0	1178	32	25	14	27	1.95
44972973--44973898	138	6.6	138	87	2	1251	32	25	14	27	1.95
44973744--44973775	16	2.0	16	93	0	55	12	34	18	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44973698--44973821	62	2.0	62	88	3	187	26	25	16	31	1.96
44973655--44973863	108	1.9	108	87	3	305	31	26	13	28	1.94
44973762--44973899	46	3.0	46	87	2	206	32	23	15	28	1.95
44973606--44973898	154	1.9	154	87	2	437	31	25	14	28	1.95
44974275--44974326	24	2.2	24	89	6	79	36	19	9	34	1.84
44974781--44975065	98	2.9	99	79	13	316	46	9	16	26	1.78
44975858--44975907	18	2.7	18	84	3	73	6	4	4	86	0.80
44979389--44979454	32	2.0	33	88	11	100	27	25	34	12	1.91
44980590--44980700	27	4.1	27	76	4	107	26	24	7	42	1.80
44980838--44980911	27	2.7	26	83	4	85	24	25	16	33	1.95
44983976--44984072	27	3.6	27	77	5	97	24	20	9	45	1.80
44990256--44990411	39	3.7	39	75	21	145	33	1	0	64	1.04
44990282--44990374	48	1.9	48	93	4	161	33	1	0	65	1.00
44990327--44990388	14	4.6	14	69	25	53	33	3	0	62	1.11
44990291--44990335	9	5.1	9	83	5	65	28	0	0	71	0.87
44990271--44990393	48	2.5	48	71	20	119	33	2	0	64	1.07
44998163--44998211	21	2.3	21	89	6	73	73	0	18	8	1.07
44999809--44999865	28	2.0	28	96	0	105	31	10	17	40	1.84
45003420--45003492	10	7.3	10	80	0	74	34	5	19	41	1.74
45003420--45003480	5	12.2	5	75	0	50	34	4	19	40	1.73
45003423--45003492	30	2.3	30	80	0	86	34	5	18	41	1.74
45009256--45009325	31	2.3	31	97	0	131	24	14	12	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45009311--45009422	58	1.9	58	85	0	152	18	14	16	50	1.77
45009342--45009422	29	2.8	29	77	7	92	19	17	16	46	1.84
45010170--45010213	22	1.9	24	86	9	65	29	0	2	68	1.02
45010936--45010969	11	3.0	11	91	4	50	47	2	0	50	1.16
45011172--45011217	23	2.0	24	86	4	67	50	0	0	50	1.00
45015007--45015057	21	2.5	21	90	3	86	17	11	13	56	1.66
45016676--45016714	21	1.9	21	84	5	53	33	0	0	66	0.92
45016676--45016732	23	2.6	23	83	8	66	38	0	3	57	1.16
45020534--45020559	13	2.0	13	100	0	52	53	0	0	46	1.00
45021106--45021135	3	10.0	3	100	0	60	66	0	0	33	0.92
45021335--45021397	28	2.2	28	97	0	117	49	6	11	33	1.64
45025424--45025503	34	2.3	34	85	6	99	32	10	12	45	1.75
45025454--45025555	34	3.0	34	76	9	91	31	11	12	44	1.79
45027034--45027063	11	2.7	11	94	0	51	56	3	0	40	1.16
45027524--45027604	29	2.9	28	78	7	74	62	1	4	30	1.24
45027502--45027622	19	6.2	18	69	21	66	63	0	3	32	1.16
45028149--45028183	16	2.2	16	100	0	70	34	5	0	60	1.21
45028177--45028228	22	2.3	22	86	3	68	42	5	0	51	1.25
45029778--45029814	17	2.2	18	80	14	51	29	2	2	64	1.21
45029785--45029827	17	2.6	16	82	10	50	37	2	2	58	1.24
45032245--45032283	19	1.9	19	90	10	60	2	20	0	76	0.90
45034478--45034796	138	2.3	138	92	1	532	35	24	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45038812--45038863	27	2.0	27	85	7	72	34	11	23	30	1.90
45041396--45041449	26	2.1	26	86	6	74	40	22	22	14	1.90
45054367--45054463	25	3.9	25	72	16	76	36	18	23	21	1.95
45054543--45054613	26	2.8	25	78	6	81	36	23	22	16	1.94
45062789--45063417	314	2.0	314	95	0	1125	36	17	10	35	1.85
45065617--45065931	96	3.3	95	83	12	396	41	1	17	38	1.59
45065617--45065899	92	3.1	90	83	12	374	40	1	18	39	1.61
45068441--45068465	13	1.9	13	100	0	50	28	0	0	72	0.86
45068514--45068562	18	2.7	18	77	3	53	48	0	0	51	1.00
45070338--45070373	3	12.0	3	100	0	72	0	33	0	66	0.92
45079623--45079667	19	2.4	19	88	0	63	26	2	4	66	1.22
45079688--45079774	9	9.1	9	72	20	61	26	2	1	70	1.07
45079700--45079771	21	3.7	20	76	20	64	23	1	1	73	0.99
45080107--45080164	23	2.3	26	81	18	79	44	10	1	43	1.48
45080107--45080172	24	2.7	25	71	23	68	43	9	3	43	1.51
45080757--45080809	14	3.9	14	80	9	74	50	9	3	35	1.53
45080757--45080812	26	2.1	27	90	6	87	51	10	3	33	1.54
45081580--45081626	25	1.9	25	87	12	71	38	4	4	53	1.40
45085987--45086026	14	2.9	14	84	0	53	32	7	17	42	1.77
45085995--45086061	35	1.9	35	87	3	100	31	10	13	44	1.77
45086010--45086049	20	2.0	20	85	0	53	27	12	12	47	1.77
45087405--45087474	27	2.6	27	80	8	79	50	21	2	25	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45098850--45098957	43	2.5	42	81	11	130	40	14	16	27	1.88
45101734--45102052	110	2.9	110	86	0	426	35	18	15	31	1.92
45102557--45102631	3	25.7	3	74	15	59	66	2	4	26	1.22
45103626--45103672	20	2.3	21	78	10	53	10	4	23	61	1.46
45105072--45105125	25	2.0	27	82	13	67	48	3	3	44	1.38
45105150--45105202	21	2.5	21	81	9	63	69	1	15	13	1.27
45106167--45106204	16	2.4	16	86	0	58	47	5	2	44	1.39
45110198--45110262	32	2.0	32	100	0	130	44	24	3	27	1.68
45112924--45112977	27	2.0	27	92	0	90	35	20	12	31	1.90
45114990--45115298	124	2.5	125	90	0	503	30	18	21	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189