genome.fa.s20.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  146  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44386591--44386685	39	2.4	39	81	18	117	44	1	11	43	1.47
44386673--44386778	47	2.4	44	89	9	153	45	2	15	36	1.61
44386720--44386746	9	3.0	9	100	0	54	44	0	22	33	1.53
44386665--44386785	47	2.7	46	83	12	128	45	2	14	38	1.58
44386730--44386794	34	1.9	34	81	12	80	47	3	13	35	1.59
44388291--44388511	84	2.6	84	85	4	252	32	20	19	27	1.97
44388336--44388511	84	2.1	84	91	0	280	32	22	18	26	1.97
44388349--44388581	84	2.8	84	82	3	256	33	21	15	30	1.94
44388894--44389059	84	2.0	84	87	0	242	30	22	18	28	1.97
44389247--44389507	88	3.0	87	86	5	330	42	26	1	29	1.65
44389488--44389527	14	2.9	14	80	0	53	32	45	0	22	1.53
44389411--44389618	102	2.0	102	85	5	278	41	28	1	27	1.66
44389652--44389719	14	4.6	14	75	10	55	39	30	1	27	1.66
44390234--44390666	113	3.8	114	85	3	480	27	25	21	25	1.99
44390234--44390695	114	4.1	113	84	3	480	27	25	21	25	1.99
44390244--44390666	227	1.9	229	82	3	539	26	25	21	25	2.00
44391349--44391552	105	2.0	104	85	1	273	30	18	21	29	1.97
44393153--44393186	17	1.9	18	88	5	52	58	20	2	17	1.51
44393583--44393621	20	2.0	20	85	10	53	64	0	2	33	1.08
44393758--44393862	26	3.9	29	76	18	102	60	6	4	27	1.42
44394299--44395008	114	6.3	114	83	7	855	27	26	20	25	1.99
44394597--44394914	113	3.0	103	79	12	390	25	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44394366--44395008	330	1.9	331	85	4	888	26	25	21	26	1.99
44395197--44395247	24	2.1	24	82	7	59	68	0	5	25	1.12
44396361--44396408	25	2.0	25	84	12	64	50	6	16	27	1.69
44399776--44399809	7	4.9	7	86	13	52	0	0	44	55	0.99
44403820--44403845	10	2.6	10	100	0	52	46	0	0	53	1.00
44408262--44408404	59	2.4	58	85	4	198	23	16	21	38	1.93
44415976--44416009	14	2.5	14	85	4	52	64	0	20	14	1.28
44417284--44418103	131	6.2	132	90	3	1219	26	18	25	29	1.98
44417284--44418119	263	3.2	262	91	1	1329	27	18	25	29	1.98
44417284--44418119	394	2.1	395	91	2	1376	27	18	25	29	1.98
44420657--44420703	18	2.6	18	90	6	69	42	0	0	57	0.98
44420850--44420957	46	2.5	44	82	10	118	35	28	6	29	1.82
44420945--44420989	16	2.8	16	96	0	81	22	31	4	42	1.73
44421808--44421873	29	2.2	31	86	5	91	39	10	9	40	1.71
44425623--44425657	18	2.0	17	88	5	52	54	0	0	45	0.99
44425867--44425901	18	2.0	17	88	5	52	54	0	0	45	0.99
44425845--44426142	120	2.5	121	92	4	505	49	4	2	43	1.37
44425966--44426017	15	3.6	15	80	12	56	53	1	0	44	1.11
44429775--44429943	23	7.0	24	76	8	173	34	7	5	51	1.55
44429764--44429946	48	3.8	48	98	0	348	36	7	6	50	1.54
44434161--44434324	45	3.6	44	70	8	150	41	12	21	24	1.88
44434170--44434381	90	2.3	91	82	2	266	38	15	23	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44434302--44434618	174	1.8	174	84	2	440	37	15	25	21	1.93
44441282--44441512	115	2.0	115	96	0	426	38	12	12	35	1.81
44447685--44447743	27	2.2	28	84	9	86	27	22	6	44	1.78
44447695--44447768	27	2.7	27	89	0	103	24	20	9	45	1.80
44450983--44451046	19	3.3	19	84	6	76	28	23	37	10	1.89
44453019--44453060	21	2.0	21	100	0	84	33	23	0	42	1.55
44455822--44455909	31	2.8	32	80	3	88	42	3	4	50	1.39
44460309--44460352	18	2.5	17	85	3	52	56	18	4	20	1.58
44460699--44460757	27	2.1	28	87	3	84	66	5	1	27	1.22
44460772--44460810	21	1.9	21	89	5	62	56	5	7	30	1.49
44462519--44462744	45	5.1	45	67	14	162	29	23	19	26	1.98
44462543--44462684	44	3.2	44	67	9	108	26	24	20	28	1.99
44462449--44463001	89	6.2	89	79	4	544	27	22	20	29	1.99
44462480--44463001	266	2.0	267	83	4	678	27	22	20	28	1.99
44470147--44470213	33	2.0	33	100	0	134	11	5	31	50	1.63
44470785--44470815	16	1.9	16	93	0	53	41	22	12	22	1.88
44477331--44477503	65	2.5	71	85	8	223	47	3	5	43	1.42
44477501--44477917	120	3.5	120	97	0	782	43	2	5	48	1.40
44477580--44477890	61	5.2	61	66	14	223	42	3	6	47	1.45
44481434--44481785	44	7.5	44	68	17	183	27	19	19	33	1.96
44481373--44481785	142	2.9	142	93	0	693	27	20	19	33	1.96
44498779--44498809	16	1.9	16	93	0	53	41	22	12	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44500270--44500313	18	2.5	17	85	3	52	56	18	4	20	1.58
44500662--44500720	27	2.1	28	84	3	75	66	3	3	27	1.24
44500735--44500773	21	1.9	20	89	5	60	56	2	7	33	1.41
44500783--44500815	15	2.2	15	89	10	50	51	6	3	39	1.42
44500841--44500880	21	1.9	21	84	0	53	55	5	2	37	1.35
44507031--44507069	12	3.2	12	100	0	78	23	7	33	35	1.83
44509384--44509424	15	2.5	17	85	14	52	43	2	0	53	1.13
44509626--44509663	19	2.1	18	85	14	51	44	0	0	55	0.99
44509626--44509672	21	2.3	20	82	7	51	46	0	0	53	1.00
44509383--44509921	241	2.2	242	91	3	899	42	2	6	49	1.40
44509383--44509921	120	4.5	120	94	2	895	42	2	6	49	1.40
44509748--44509799	15	3.6	15	80	12	56	44	0	1	53	1.11
44510133--44510202	16	4.4	16	87	0	86	27	31	2	38	1.71
44510587--44510654	32	2.2	31	84	10	86	47	2	1	48	1.26
44514799--44514954	41	3.8	41	89	6	235	28	22	20	28	1.98
44515437--44515484	24	2.1	23	85	11	64	31	14	0	54	1.41
44522404--44522559	41	3.8	41	89	6	235	28	22	20	28	1.98
44525776--44525836	32	1.9	32	87	12	90	24	24	19	31	1.98
44525788--44525850	33	1.9	32	84	9	83	28	23	20	26	1.99
44526223--44526935	354	2.0	354	88	0	1068	26	27	20	24	1.99
44530301--44530427	24	5.6	23	73	17	95	38	11	3	46	1.57
44530567--44530609	13	2.8	17	80	20	58	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44530546--44530624	30	2.7	29	72	16	72	37	3	5	53	1.41
44530649--44530694	21	2.2	20	84	3	56	23	8	0	67	1.18
44538845--44538909	30	2.2	28	78	7	76	18	15	6	60	1.56
44538921--44539012	3	31.0	3	73	6	80	32	2	5	59	1.32
44538921--44539012	21	4.4	20	80	5	94	32	2	5	59	1.32
44538984--44539018	18	1.9	18	88	0	52	31	5	8	54	1.54
44539062--44539091	2	15.0	2	92	0	51	46	0	0	53	1.00
44539078--44539148	27	2.7	27	85	10	94	42	4	4	49	1.41
44539078--44539147	25	2.7	25	81	14	88	42	4	4	48	1.42
44548243--44548282	15	2.9	14	82	10	55	35	0	20	45	1.51
44549233--44549262	10	3.1	10	95	4	53	56	0	0	43	0.99
44551786--44551811	13	2.0	13	100	0	52	38	0	7	53	1.30
44573481--44573519	20	2.0	20	95	5	71	38	0	5	56	1.22
44573522--44573558	19	2.0	19	89	5	58	35	0	8	56	1.29
44573522--44573571	18	2.7	19	84	9	59	38	0	8	54	1.30
44574279--44574327	23	2.2	22	92	3	80	36	0	12	51	1.40
44576317--44576417	51	2.0	52	84	5	134	46	1	26	24	1.63
44576378--44576418	11	3.6	11	93	3	64	41	2	34	21	1.67
44576625--44576673	20	2.4	21	86	3	64	71	4	0	24	1.03
44579920--44580358	16	27.9	16	67	20	168	32	1	20	44	1.62
44579905--44580358	25	18.2	25	73	13	316	32	1	20	44	1.62
44579916--44580364	9	51.8	9	68	18	258	32	2	20	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44580237--44580345	34	3.2	33	87	3	137	31	0	19	48	1.55
44580401--44580441	19	2.2	19	86	8	57	56	0	2	41	1.13
44580970--44580998	12	2.4	12	100	0	58	55	17	6	20	1.65
44581795--44581862	22	3.1	21	71	12	66	39	10	25	25	1.87
44582147--44582623	124	3.8	123	83	4	557	26	23	17	32	1.97
44582167--44582623	248	1.8	248	85	2	650	26	23	17	32	1.97
44582921--44582973	25	2.1	26	82	3	63	18	3	3	73	1.14
44582920--44582968	19	2.5	19	83	3	62	20	2	4	73	1.10
44583398--44583426	15	1.9	15	100	0	58	34	51	0	13	1.42
44583406--44583458	21	2.5	22	81	9	65	39	39	0	20	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189