genome.fa.s20.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  142  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43184622--43184672	25	2.0	26	88	3	77	56	0	0	43	0.99
43185118--43185222	44	2.5	40	76	15	113	31	29	4	34	1.78
43185116--43185225	45	2.6	44	81	8	131	31	29	5	33	1.80
43185206--43185257	16	3.2	16	88	0	77	34	34	0	30	1.58
43189697--43189939	50	4.9	50	88	0	324	21	31	20	26	1.98
43195353--43195396	23	1.9	23	95	0	79	25	25	11	38	1.89
43197711--43198147	50	8.8	50	82	2	486	27	21	28	22	1.99
43203930--43203992	20	3.2	20	73	8	74	14	26	19	39	1.90
43226190--43226375	50	3.6	50	78	7	176	27	22	26	23	1.99
43226627--43226675	20	2.5	20	81	15	66	57	6	24	12	1.58
43226785--43226811	14	1.9	14	100	0	54	14	18	0	66	1.25
43231403--43231524	22	5.3	22	62	21	61	25	29	11	33	1.91
43231375--43231925	47	11.6	47	91	4	761	28	29	8	33	1.87
43233382--43233501	56	2.1	56	98	0	231	22	23	9	45	1.81
43234854--43235331	40	12.0	40	94	2	811	26	27	20	24	1.99
43235310--43235450	39	3.6	39	78	7	126	24	28	21	25	1.99
43237729--43238276	47	11.6	47	93	2	798	28	30	8	32	1.87
43237729--43238276	190	2.9	190	88	3	811	28	30	8	32	1.87
43239725--43239844	56	2.1	56	98	0	231	22	23	9	45	1.81
43244618--43244658	21	2.0	21	85	4	57	48	4	2	43	1.37
43254643--43254763	36	3.4	36	83	5	120	15	12	28	43	1.83
43254683--43254765	36	2.3	36	91	0	130	14	9	32	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43259899--43259958	22	2.8	22	72	12	61	40	13	0	46	1.43
43260163--43260217	6	9.0	6	89	2	83	18	20	0	61	1.34
43260828--43260866	6	6.3	6	96	3	69	15	15	2	66	1.36
43272750--43272798	20	2.5	20	89	0	71	24	12	4	59	1.50
43272844--43272890	24	2.0	24	91	0	76	38	17	17	27	1.91
43274529--43274562	14	2.5	13	86	9	50	41	20	11	26	1.87
43275005--43275042	18	2.1	18	95	0	67	57	2	5	34	1.35
43275000--43275046	18	2.4	20	79	17	62	61	2	6	29	1.32
43275284--43275348	26	2.4	27	78	16	73	23	46	18	12	1.82
43276580--43276613	14	2.6	13	86	13	52	55	0	0	44	0.99
43281870--43281921	24	2.2	24	89	0	77	55	9	1	32	1.43
43286022--43286076	25	2.2	25	84	9	69	52	1	0	45	1.11
43290625--43290684	20	3.2	19	84	11	63	15	21	43	20	1.88
43290651--43290686	17	2.1	18	94	5	65	13	16	41	27	1.87
43290899--43291127	27	8.4	27	81	4	124	42	20	15	20	1.89
43290957--43291127	27	6.3	27	86	2	211	43	20	16	19	1.88
43290967--43291125	81	2.0	81	89	2	248	42	20	16	19	1.89
43291360--43291414	26	2.1	26	86	0	74	23	20	21	34	1.97
43291532--43291614	33	2.5	33	92	0	130	25	31	20	22	1.98
43292629--43292687	30	2.0	30	87	9	86	61	11	15	11	1.58
43297432--43297465	16	2.1	16	94	0	59	47	8	11	32	1.71
43300787--43300838	25	2.1	25	96	0	95	21	21	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43301972--43302020	25	2.0	25	100	0	98	40	28	14	16	1.87
43308179--43308311	41	3.2	41	86	4	187	21	21	7	50	1.73
43312315--43312376	25	2.5	25	77	12	65	53	1	0	45	1.10
43316957--43317076	56	2.1	56	98	0	231	45	9	23	22	1.81
43318203--43318350	40	3.6	41	81	7	176	23	22	28	25	1.99
43318203--43318369	40	4.1	40	78	9	169	24	22	28	25	1.99
43324835--43324955	57	2.1	56	96	1	224	44	9	23	22	1.81
43326083--43326228	40	3.7	40	84	7	181	23	22	27	26	2.00
43326083--43326261	80	2.2	80	81	6	195	25	21	26	25	2.00
43330095--43330148	16	3.4	16	92	0	81	35	0	33	31	1.58
43330105--43330150	16	2.9	16	96	0	83	39	0	34	26	1.57
43330127--43330224	44	2.2	44	83	1	124	34	5	27	32	1.79
43330358--43330412	25	2.2	25	84	9	69	52	1	0	45	1.11
43334682--43335367	50	13.5	50	84	3	832	21	30	21	26	1.98
43334682--43335256	200	2.9	200	96	0	1044	21	30	21	26	1.98
43335195--43335318	62	2.0	62	90	0	194	21	33	18	26	1.97
43335145--43335367	112	2.0	112	91	0	365	21	32	19	26	1.97
43340070--43340180	39	2.8	40	80	9	111	36	8	9	45	1.67
43346266--43346360	29	3.3	28	77	14	113	30	17	23	28	1.97
43346266--43346386	57	2.1	57	90	0	188	31	17	21	29	1.96
43350485--43350937	232	2.0	232	100	0	906	29	22	16	31	1.96
43355405--43355601	48	4.1	48	80	0	232	22	28	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43373853--43374089	82	2.9	82	86	5	311	32	12	8	47	1.71
43374195--43374225	12	2.5	13	94	5	55	19	6	25	48	1.72
43374201--43374255	28	1.9	29	85	3	76	29	10	20	40	1.86
43379073--43379189	51	2.4	48	83	9	146	32	2	9	55	1.45
43383722--43383765	18	2.4	19	84	7	63	38	0	11	50	1.39
43386299--43386363	31	2.1	32	88	2	96	46	6	1	46	1.37
43386617--43386660	22	2.0	23	86	4	63	43	9	2	45	1.48
43387939--43387973	17	2.0	18	94	5	63	74	0	0	25	0.82
43388152--43388244	25	3.7	25	74	18	86	64	1	4	30	1.19
43388188--43388235	22	2.0	25	84	15	66	64	2	4	29	1.23
43388154--43388255	42	2.3	44	78	8	120	65	0	3	29	1.17
43392950--43393009	31	2.0	31	83	3	77	45	5	11	38	1.63
43393036--43393172	66	2.1	66	88	0	202	27	21	18	32	1.96
43395995--43396025	12	2.5	13	94	5	55	41	0	0	58	0.98
43396051--43396102	20	2.8	18	76	21	54	50	3	3	42	1.39
43399590--43399767	89	2.0	89	94	0	311	23	32	18	25	1.97
43413392--43413432	15	2.7	16	81	11	50	43	17	2	36	1.62
43419248--43419297	20	2.7	19	80	20	61	54	2	2	42	1.23
43426779--43426888	39	2.8	39	84	2	150	36	6	9	48	1.61
43433699--43433759	26	2.3	26	77	0	68	27	18	13	40	1.87
43437683--43437905	40	5.6	39	80	7	216	25	21	27	25	1.99
43437763--43437940	79	2.2	80	82	3	200	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43450768--43450900	45	3.0	43	84	9	164	24	17	27	31	1.97
43460148--43460281	46	2.9	46	74	12	112	32	21	20	26	1.98
43464150--43464226	36	2.1	36	83	9	95	59	5	3	31	1.37
43465176--43465219	22	2.0	22	100	0	88	45	13	13	27	1.81
43477473--43477653	86	2.1	86	98	1	355	40	4	7	47	1.52
43477720--43477924	51	4.0	51	96	1	378	45	18	7	28	1.75
43477871--43477979	33	3.3	33	79	13	127	42	17	8	32	1.79
43481030--43481116	28	3.1	28	69	17	74	43	1	2	52	1.21
43481217--43481429	67	3.2	66	66	21	161	46	2	3	47	1.35
43481173--43481431	137	1.9	138	90	0	412	46	3	3	46	1.38
43481321--43481371	18	3.0	18	78	18	56	47	0	0	52	1.00
43481206--43481524	137	2.3	139	80	8	332	45	5	3	46	1.42
43481303--43481624	156	2.1	156	95	0	572	45	6	3	44	1.46
43481477--43481525	15	2.9	18	80	20	61	44	0	0	55	0.99
43481477--43481531	15	3.4	16	80	16	53	43	0	1	54	1.10
43481747--43481782	16	2.2	16	100	0	72	38	36	0	25	1.56
43482788--43482825	18	2.1	18	95	0	67	57	0	7	34	1.28
43486534--43486562	5	5.8	5	100	0	58	82	0	17	0	0.66
43495449--43495480	15	2.1	15	94	0	55	15	6	9	68	1.36
43496582--43496608	14	1.9	14	100	0	54	51	0	11	37	1.37
43497133--43497249	62	1.9	61	84	5	157	43	2	4	49	1.35
43499408--43499461	22	2.5	21	81	6	63	31	5	0	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43502037--43502063	2	13.5	2	100	0	54	51	0	48	0	1.00
43507818--43507848	12	2.6	12	100	0	62	29	0	0	70	0.87
43518473--43518627	45	3.4	44	87	3	220	40	20	19	20	1.92
43518488--43518654	45	4.0	40	83	6	142	39	20	19	20	1.93
43520144--43520180	18	2.1	18	90	10	58	72	2	18	5	1.15
43521950--43522021	33	2.1	35	85	10	105	37	8	13	40	1.75
43533182--43533274	41	2.2	43	88	3	136	30	24	18	26	1.98
43534180--43534223	15	3.1	14	80	12	54	43	6	0	50	1.29
43548392--43548509	40	3.0	40	75	9	116	34	18	33	13	1.90
43548393--43548511	20	5.9	19	71	5	67	36	17	32	13	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189