genome.fa.s20.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  47  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13632174--13632452	41	6.8	41	96	0	506	31	22	18	26	1.98
13634138--13634163	12	2.2	12	100	0	52	84	0	15	0	0.62
13634829--13634952	42	2.9	44	79	10	125	25	18	27	29	1.98
13634834--13635035	43	4.7	43	77	7	164	26	16	25	30	1.97
13637710--13637757	4	12.0	4	86	0	60	22	0	6	70	1.09
13637972--13638006	16	2.2	16	89	0	52	28	8	0	62	1.24
13646717--13646769	25	2.1	25	85	0	70	47	3	0	49	1.19
13655494--13655551	11	5.2	11	87	2	80	22	32	1	43	1.64
13655494--13655570	22	3.4	23	84	13	99	24	31	1	42	1.63
13655493--13655567	33	2.2	33	84	9	98	24	32	1	42	1.63
13655493--13655570	11	7.0	11	74	21	74	24	30	1	43	1.62
13657478--13657517	18	2.2	18	95	0	71	22	30	7	40	1.81
13659807--13659872	24	2.8	24	79	11	73	50	10	6	33	1.62
13660735--13660759	13	1.9	13	100	0	50	80	0	20	0	0.72
13661473--13661721	87	2.9	88	92	1	412	23	27	23	25	2.00
13661741--13662080	44	7.7	44	81	3	364	23	25	20	30	1.99
13661758--13662080	88	3.7	87	88	1	448	23	25	20	30	1.99
13661753--13662080	132	2.5	132	85	1	442	23	25	21	30	1.99
13663380--13663468	47	1.9	46	86	2	124	17	17	17	46	1.85
13667956--13667981	13	2.0	13	100	0	52	23	7	7	61	1.49
13668073--13668141	24	2.8	25	78	10	81	49	10	5	34	1.61
13669005--13669029	13	1.9	13	100	0	50	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13671643--13672020	125	3.0	125	87	3	589	29	22	17	29	1.97
13679903--13680225	161	2.0	159	94	2	567	37	8	24	30	1.85
13690572--13690790	118	1.9	118	99	0	429	26	10	10	51	1.70
13696374--13696398	13	1.9	13	100	0	50	40	0	8	52	1.31
13704215--13704276	27	2.3	27	85	0	88	22	20	32	24	1.98
13704574--13704619	20	2.4	19	75	7	56	23	2	10	63	1.38
13709622--13709647	7	3.7	7	100	0	52	61	0	0	38	0.96
13709720--13709785	4	17.8	4	81	12	63	0	27	0	72	0.85
13710137--13710195	19	3.0	21	79	18	65	50	0	0	49	1.00
13712891--13712926	13	2.7	13	86	4	54	33	2	0	63	1.08
13713505--13713538	2	17.0	2	100	0	68	50	0	50	0	1.00
13717035--13717082	23	2.1	23	88	0	69	39	2	4	54	1.32
13721320--13721364	21	2.2	21	84	7	58	46	24	22	6	1.75
13721333--13721373	21	2.0	21	90	0	64	48	24	17	9	1.76
13721358--13721476	21	5.7	21	64	11	73	44	17	20	17	1.87
13721358--13721475	42	2.8	42	85	2	166	44	17	20	17	1.87
13728650--13728688	18	2.0	20	85	9	55	10	17	2	69	1.28
13729586--13729635	27	2.0	25	85	14	68	42	12	4	42	1.60
13731717--13731875	28	5.7	28	79	3	122	23	15	6	55	1.62
13731717--13731848	56	2.4	56	80	2	140	24	15	6	54	1.63
13733131--13733181	24	2.3	21	80	12	57	39	9	11	39	1.75
13733139--13733181	21	1.9	23	86	13	63	39	6	9	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13743428--13743484	23	2.3	26	85	11	75	45	5	7	42	1.53
13753252--13753293	22	1.9	22	85	0	57	52	0	2	45	1.13
13757143--13757172	15	2.0	15	93	0	51	40	10	0	50	1.36
13757735--13757785	10	5.1	10	92	0	75	1	11	0	86	0.66
13757732--13757785	16	3.5	16	82	10	76	1	12	0	85	0.69
13757783--13757824	4	11.2	4	85	14	63	23	0	0	76	0.79
13757741--13757834	10	9.1	10	86	9	82	13	5	0	80	0.87
13757772--13757834	14	4.8	13	75	21	60	20	0	0	79	0.73
13757777--13757834	22	2.7	21	92	7	91	22	0	0	77	0.77
13757777--13757834	17	3.5	17	84	11	68	22	0	0	77	0.77
13758874--13758943	17	4.2	17	71	22	67	72	0	4	22	1.01
13758866--13758943	25	3.2	25	77	18	92	71	0	5	23	1.05
13758874--13758941	4	16.5	4	74	19	52	73	0	4	22	1.01
13765364--13765399	15	2.5	14	86	8	54	44	8	0	47	1.33
13767553--13767837	69	4.2	69	70	6	204	25	23	19	31	1.98
13767573--13767856	136	2.1	136	89	1	426	26	22	18	33	1.97
13769033--13769081	25	2.0	24	88	4	71	42	0	0	57	0.99
13769043--13769087	19	2.4	20	82	10	60	42	0	0	57	0.98
13768983--13769113	69	1.9	68	81	7	158	42	0	4	52	1.22
13783962--13784037	11	6.8	11	70	24	52	56	2	1	39	1.21
13785601--13785700	41	2.4	42	81	6	116	31	24	18	27	1.97
13787493--13787666	41	4.2	41	89	0	249	28	24	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13789294--13789345	28	1.9	26	92	7	86	46	7	0	46	1.31
13790672--13790700	13	2.3	13	94	5	51	44	20	3	31	1.68
13798436--13798482	14	3.4	14	77	16	53	70	2	6	21	1.20
13798562--13799339	163	4.9	155	70	15	512	50	7	11	29	1.67
13798569--13799339	325	2.4	319	89	4	1167	50	7	11	29	1.67
13801925--13802122	46	4.4	46	93	1	330	28	22	14	34	1.93
13807221--13807246	6	4.3	6	100	0	52	15	30	0	53	1.42
13813096--13813138	21	2.0	21	100	0	86	53	4	13	27	1.60
13813157--13813269	37	3.1	37	85	1	165	31	5	15	46	1.69
13813276--13813342	9	7.0	9	80	12	80	20	5	31	41	1.77
13813272--13813342	29	2.4	29	100	0	142	21	7	29	42	1.79
13813272--13813342	20	3.7	19	80	15	92	21	7	29	42	1.79
13813435--13813512	29	2.8	27	75	16	77	30	11	25	32	1.91
13815082--13815115	17	2.1	16	94	5	59	17	23	14	44	1.86
13820219--13820271	2	26.5	2	96	0	97	49	1	49	0	1.12
13825005--13825060	22	2.5	23	82	2	69	51	1	1	44	1.22
13825036--13825075	16	2.5	16	91	0	62	47	2	7	42	1.45
13825064--13825328	66	4.1	66	94	3	454	40	4	8	45	1.56
13825395--13825439	23	1.9	24	90	4	74	60	2	0	37	1.09
13826139--13826212	22	3.5	22	72	23	86	59	17	5	17	1.56
13826149--13826219	19	3.6	19	74	10	79	56	18	7	18	1.63
13826168--13826197	11	2.7	11	89	0	51	60	13	10	16	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13826604--13826640	9	4.1	9	89	0	56	13	40	10	35	1.80
13829095--13829225	13	10.2	13	78	9	126	54	4	3	37	1.39
13829095--13829190	40	2.4	40	91	3	149	55	5	3	36	1.38
13829063--13829215	27	5.9	27	76	8	115	54	4	3	37	1.37
13829175--13829216	22	2.0	21	90	4	66	54	4	2	38	1.34
13829315--13829350	14	2.6	14	95	0	63	66	2	11	19	1.35
13829353--13829386	15	2.3	15	94	0	59	41	5	8	44	1.60
13829422--13829551	13	10.2	13	77	11	126	52	5	4	37	1.45
13829422--13829551	39	3.4	38	86	8	167	52	5	4	37	1.45
13829422--13829553	35	3.5	37	85	7	151	52	6	4	37	1.47
13829041--13829665	327	1.9	327	95	0	1126	51	5	5	37	1.50
13830793--13830860	29	2.3	30	84	5	93	55	26	4	13	1.56
13832665--13832694	15	1.9	16	93	6	53	13	10	3	73	1.21
13832691--13832716	13	2.0	13	100	0	52	15	38	15	30	1.88
13833662--13833769	54	2.0	54	100	0	216	29	12	22	35	1.91
13834237--13834285	25	2.0	25	84	8	64	12	18	20	48	1.79
13834783--13834989	57	3.5	56	77	16	222	49	6	11	33	1.63
13834850--13834998	67	2.2	67	95	0	271	51	7	10	30	1.64
13834973--13834998	12	2.2	12	100	0	52	57	11	7	23	1.59
13838643--13838724	26	2.9	28	80	10	87	42	0	1	56	1.07
13838556--13838818	120	2.3	115	88	7	378	43	1	4	50	1.32
13838947--13839046	44	2.4	42	78	15	116	38	27	3	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13838963--13839052	46	2.0	46	86	4	130	40	27	3	28	1.72
13839032--13839069	16	2.4	16	86	0	58	26	31	2	39	1.70
13849930--13850024	47	2.0	47	97	0	181	23	17	23	35	1.95
13851179--13851212	15	2.2	16	89	5	52	20	5	11	61	1.50
13852316--13852354	18	2.2	18	86	9	53	61	2	0	35	1.10
13852311--13852353	17	2.5	18	81	7	54	53	2	0	44	1.13
13865853--13865905	26	2.0	26	89	7	81	39	7	16	35	1.78
13874151--13874206	28	2.0	28	100	0	112	25	35	10	28	1.89
13881178--13881214	16	2.2	17	90	4	58	48	0	0	51	1.00
13881192--13881259	19	3.2	21	74	20	61	44	0	5	50	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189