Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  189  of  189  ( 22580 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56412418--56413395
385
2.5
389
89
2
1428
30
21
22
25
1.99
56413015--56413395
99
3.8
99
83
3
453
30
22
21
25
1.99
56413448--56413586
44
3.2
44
68
10
131
32
23
24
20
1.98
56413429--56413605
87
2.0
87
94
2
311
32
23
21
22
1.98
56413394--56413570
43
4.2
43
69
10
132
31
24
20
22
1.98
56413433--56413627
87
2.2
87
89
3
286
32
24
22
20
1.98
56429070--56429126
30
1.9
30
85
3
80
43
1
21
33
1.63
56429467--56429712
50
4.8
50
89
2
366
26
22
30
20
1.98
56434932--56434965
15
2.3
15
100
0
68
44
17
14
23
1.86
56436430--56436503
23
3.2
23
83
7
105
31
25
21
21
1.98
56441706--56441737
14
2.2
15
94
5
57
71
6
15
6
1.26
56441675--56441774
18
5.9
18
76
13
72
63
13
14
10
1.53
56441732--56441774
19
2.3
19
92
4
70
58
13
18
9
1.62
56443063--56443645
124
4.7
124
82
1
614
26
21
16
35
1.95
56443063--56443645
247
2.3
246
80
2
677
26
21
16
35
1.95
56444402--56444455
14
3.9
14
85
0
72
48
24
3
24
1.67
56444392--56444466
28
2.7
28
76
12
73
48
25
4
22
1.68
56444825--56444912
40
2.2
39
83
4
104
25
18
23
32
1.97
56446685--56446721
16
2.2
17
90
4
58
27
24
21
27
1.99
56447628--56447758
70
1.9
70
95
0
235
23
13
28
34
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189

The End!