genome.fa.s20.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  35  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10801606--10801637	16	1.9	17	93	6	57	56	0	18	25	1.42
10801963--10802002	3	13.3	3	89	10	64	30	0	2	67	1.04
10801969--10802006	12	3.2	12	92	7	60	26	0	5	68	1.11
10802356--10802410	28	2.0	27	92	3	92	34	20	0	45	1.51
10802405--10802466	30	2.1	29	82	8	72	29	24	11	35	1.90
10808056--10808109	22	2.6	21	85	14	76	79	5	14	0	0.90
10808057--10808109	19	2.6	19	88	11	70	79	5	15	0	0.91
10808205--10808252	23	2.1	22	85	11	62	77	0	22	0	0.78
10808654--10808696	16	2.7	16	81	0	59	13	2	4	79	1.00
10808987--10809306	17	17.6	17	71	15	189	32	14	9	43	1.77
10808989--10809306	18	17.5	18	72	14	208	32	14	9	43	1.77
10808989--10809270	35	7.8	35	73	19	152	32	14	8	43	1.76
10808987--10809308	74	4.4	72	76	13	223	32	14	9	43	1.77
10809146--10809252	56	1.9	57	82	5	137	33	16	8	41	1.79
10808987--10809322	38	9.2	37	77	11	225	32	14	9	43	1.78
10808987--10809322	75	4.6	73	75	14	210	32	14	9	43	1.78
10809332--10809373	21	2.0	20	86	4	57	45	2	7	45	1.44
10809353--10809384	16	1.9	17	93	6	57	31	3	12	53	1.54
10809332--10809411	38	2.1	38	81	9	92	40	7	10	42	1.67
10809345--10809426	20	4.3	19	72	14	71	40	8	10	40	1.71
10809456--10809546	35	2.6	34	81	11	105	42	7	8	40	1.64
10809508--10809549	19	2.2	19	86	4	57	47	7	7	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10813803--10813833	9	3.4	9	90	0	53	25	12	22	38	1.90
10813887--10813923	9	4.1	9	89	0	56	45	10	10	32	1.74
10822693--10823235	78	7.0	78	86	4	670	27	16	21	34	1.94
10822693--10823247	233	2.4	230	85	4	733	27	16	21	34	1.95
10822676--10823235	155	3.6	153	83	8	645	27	16	20	36	1.93
10823306--10823330	13	1.9	13	100	0	50	76	8	0	16	1.02
10824219--10824256	4	9.8	4	83	16	53	76	0	23	0	0.79
10824220--10824292	26	2.8	26	79	6	76	75	0	24	0	0.81
10824224--10824291	12	5.2	13	73	16	52	75	0	25	0	0.81
10825007--10825329	17	17.8	18	68	15	168	31	12	10	45	1.76
10824996--10825344	38	9.6	36	70	11	153	32	12	10	44	1.77
10825357--10825396	21	2.0	20	90	5	62	42	5	7	45	1.54
10825410--10825453	20	2.3	19	88	4	61	52	9	9	29	1.64
10825475--10825572	36	2.7	35	82	14	112	37	6	9	46	1.61
10825496--10825575	20	4.2	20	65	22	55	41	6	8	43	1.61
10826678--10826763	40	2.1	41	82	6	104	29	10	16	44	1.81
10839034--10839073	17	2.3	18	86	4	55	60	2	5	32	1.32
10840079--10840115	9	4.1	9	92	0	65	29	10	13	45	1.77
10846297--10846409	49	2.3	51	86	4	151	29	20	26	23	1.99
10846297--10846410	25	4.6	26	77	14	107	28	20	26	24	1.99
10850087--10850231	41	3.5	41	88	1	202	28	16	25	28	1.97
10850086--10850314	82	2.8	81	80	7	223	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10850210--10850313	41	2.5	41	96	0	190	26	21	29	22	1.99
10852336--10852402	23	2.9	23	93	0	116	38	4	29	26	1.76
10852573--10852687	57	2.0	57	93	0	194	35	11	24	28	1.90
10855429--10855474	24	1.9	24	95	0	83	17	28	4	50	1.65
10859367--10859412	9	4.5	10	80	20	51	28	2	6	63	1.31
10859367--10859412	20	2.2	20	82	17	51	28	2	6	63	1.31
10866886--10866932	22	2.1	23	88	4	69	57	0	0	42	0.98
10869557--10869663	42	2.5	42	89	0	160	28	42	14	14	1.85
10869729--10869972	36	6.8	36	96	0	416	25	38	18	17	1.92
10869729--10870165	144	3.0	142	82	8	426	26	40	15	17	1.89
10869911--10870206	144	2.1	144	97	0	556	28	41	12	16	1.85
10870875--10870905	15	2.1	15	100	0	62	12	0	0	87	0.55
10873922--10873960	20	2.0	20	100	0	78	25	17	25	30	1.97
10875481--10875646	64	2.8	57	69	23	153	42	1	3	53	1.26
10878620--10878654	3	12.0	3	87	6	54	0	0	28	71	0.86
10879496--10879803	151	2.0	152	91	1	503	30	9	10	49	1.70
10900718--10900782	33	2.0	33	90	6	105	50	7	13	27	1.69
10904153--10904265	37	3.1	37	76	13	99	40	1	4	53	1.31
10904153--10904228	11	6.8	11	70	24	52	42	1	2	53	1.23
10904153--10904248	48	1.9	48	81	6	111	41	2	4	52	1.32
10907538--10907568	16	1.9	16	93	0	53	67	6	0	25	1.14
10909511--10909564	22	2.3	24	81	9	67	35	1	7	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10931035--10931129	47	2.0	47	97	0	181	24	1	16	57	1.45
10931435--10931477	22	2.0	22	90	0	68	11	20	25	41	1.86
10931575--10931927	43	8.2	42	75	5	251	28	30	19	21	1.98
10931658--10931927	86	3.1	87	84	2	348	29	31	18	20	1.96
10932281--10932368	21	4.2	21	82	0	86	5	42	18	34	1.74
10932344--10932484	66	2.1	66	85	5	187	14	28	16	40	1.88
10932382--10932508	66	1.9	66	82	3	157	15	25	15	42	1.87
10937930--10938334	9	46.9	9	66	14	131	30	4	18	46	1.69
10937970--10938035	25	2.6	25	80	0	78	34	3	18	43	1.65
10937990--10938113	16	8.0	16	67	21	68	29	5	18	46	1.72
10937940--10938090	50	3.0	49	77	7	160	31	4	20	43	1.72
10938145--10938215	37	1.9	37	97	0	133	30	2	15	50	1.58
10938100--10938238	55	2.5	55	85	0	197	30	3	16	49	1.63
10938331--10938803	92	5.1	92	97	1	885	48	4	6	39	1.50
10938331--10938803	183	2.6	185	97	2	887	48	4	6	39	1.50
10940780--10940824	23	2.0	23	86	8	65	40	6	6	46	1.56
10943697--10943742	20	2.3	20	88	7	67	63	4	2	30	1.26
10944414--10944504	42	2.2	42	85	0	119	20	35	17	26	1.95
10945060--10945108	6	8.2	6	100	0	98	51	32	0	16	1.45
10953637--10953688	24	2.2	24	89	0	77	34	1	11	51	1.49
10957549--10957600	24	2.2	24	92	0	86	36	1	9	51	1.46
10959604--10959719	22	5.8	20	70	13	62	23	14	15	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10959615--10959654	11	3.8	11	75	24	50	32	5	15	47	1.66
10959663--10959719	22	2.6	22	97	0	105	17	19	15	47	1.83
10962859--10963007	74	2.0	74	98	0	289	39	8	15	36	1.77
10979655--10979698	14	3.1	14	75	12	54	22	22	4	50	1.67
10979971--10980013	22	2.0	22	100	0	86	9	18	27	44	1.80
10980198--10980290	43	2.2	43	88	0	132	29	33	16	21	1.95
10980598--10980699	21	4.9	21	81	3	116	3	42	17	36	1.68
10980598--10980710	42	2.7	42	84	0	136	5	41	16	36	1.71
10980748--10980783	17	2.1	17	100	0	72	5	41	16	36	1.72
10980686--10980844	83	1.9	83	85	5	223	12	30	18	38	1.88
10986276--10986560	9	33.1	9	66	20	112	31	2	18	46	1.64
10986278--10986542	38	6.8	40	69	16	146	32	3	18	46	1.64
10986283--10986560	16	17.8	16	65	18	86	32	2	18	47	1.62
10986369--10986466	25	3.8	25	78	5	106	34	2	19	43	1.62
10986563--10986894	121	2.7	121	93	0	574	44	7	9	39	1.64
10992741--10992829	18	4.8	18	79	14	101	41	0	12	46	1.41
10992745--10992978	39	6.0	37	75	13	177	41	1	11	45	1.50
10992743--10992847	31	3.5	31	71	21	100	42	0	13	43	1.43
10992870--10992961	13	6.9	13	71	18	73	42	3	8	45	1.51
10992855--10992978	40	3.1	39	85	5	151	40	2	10	46	1.51
10995683--10995784	41	2.5	40	88	6	150	28	25	19	26	1.99
10999399--10999493	14	6.5	15	66	23	51	36	41	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10999400--10999461	15	4.1	15	76	12	56	32	45	0	22	1.53
11000165--11000209	18	2.3	20	85	11	67	15	2	2	80	0.92
11000594--11000633	20	2.0	20	85	9	55	35	45	0	20	1.51
11001540--11001777	41	5.8	41	84	6	297	31	26	22	20	1.98
11001540--11001773	123	1.9	122	85	4	328	31	25	22	20	1.98
11001832--11001950	40	3.0	40	79	2	134	20	19	21	38	1.93
11001834--11001965	40	3.3	39	75	10	117	21	21	20	36	1.95
11006521--11006545	12	2.1	12	100	0	50	52	24	8	16	1.70
11014396--11014431	16	2.2	16	100	0	72	38	5	33	22	1.77
11014411--11014519	45	2.6	43	80	12	129	32	5	29	33	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189