genome.fa.s20.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  156  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46927304--46927352	14	3.4	15	76	23	52	71	18	4	6	1.23
46930956--46930988	17	1.9	17	100	0	66	24	18	27	30	1.98
46938336--46938390	27	2.0	27	86	6	76	45	3	1	49	1.30
46938379--46938424	21	2.2	20	84	3	56	36	4	4	54	1.40
46941258--46941312	21	2.6	21	94	0	92	29	25	29	16	1.97
46949948--46949993	23	2.0	23	100	0	92	17	13	17	52	1.75
46950723--46950753	15	2.1	15	93	0	53	35	3	19	41	1.67
46950708--46950756	18	2.7	18	77	0	62	40	2	22	34	1.66
46950798--46950832	18	1.9	18	94	0	61	62	5	22	8	1.45
46951871--46951912	15	2.7	16	78	14	52	45	2	0	52	1.13
46953991--46954169	68	2.9	59	82	13	250	45	8	5	40	1.56
46954082--46954107	9	2.9	9	100	0	52	57	7	0	34	1.27
46954021--46954191	68	2.5	68	95	1	301	47	7	4	40	1.51
46954180--46954221	16	2.6	16	92	0	66	42	7	2	47	1.43
46954021--46954213	68	3.0	66	90	6	274	48	7	3	40	1.50
46954203--46954263	30	2.0	31	83	6	79	50	1	1	45	1.21
46954451--46954490	21	1.9	21	85	10	55	22	2	7	67	1.28
46954556--46954599	11	3.7	11	85	11	52	50	2	2	45	1.27
46959626--46959683	30	1.9	30	92	0	98	13	29	37	18	1.90
46960005--46960341	72	4.7	71	85	2	381	54	14	5	25	1.62
46961611--46961649	20	2.0	20	90	10	62	15	23	5	56	1.59
46966544--46966632	40	2.2	40	90	2	144	39	16	19	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46967328--46967384	21	2.6	22	80	8	62	17	22	21	38	1.93
46967337--46967392	21	2.6	21	82	2	67	19	19	23	37	1.94
46969874--46969996	62	2.0	62	96	0	228	40	9	16	33	1.81
46971031--46971117	37	2.4	37	94	0	147	25	1	29	43	1.62
46972615--46972649	12	2.9	12	82	0	52	68	2	2	25	1.17
46973264--46973292	3	9.7	3	100	0	58	68	0	0	31	0.89
46973792--46973838	25	1.9	24	86	4	67	19	0	10	70	1.16
46974482--46974530	14	3.5	14	79	20	66	30	0	18	51	1.47
46974470--46974529	28	2.1	28	100	0	120	30	0	18	51	1.46
46977980--46978004	5	5.0	5	100	0	50	20	0	20	60	1.37
46991930--46992083	56	2.7	55	87	5	209	30	7	16	45	1.75
46996595--46996625	5	6.2	5	100	0	62	61	0	0	38	0.96
47000553--47000796	40	6.1	39	82	5	256	16	30	18	34	1.93
47000544--47000790	81	3.1	79	83	4	300	17	29	17	34	1.93
47000569--47000811	20	12.1	21	63	15	84	17	30	17	34	1.93
47000773--47000821	20	2.5	20	82	0	62	12	28	22	36	1.90
47001294--47001319	13	2.0	13	100	0	52	38	7	15	38	1.76
47003188--47003223	18	2.1	18	90	10	58	44	16	13	25	1.85
47005955--47006002	20	2.3	21	79	13	55	20	20	4	54	1.61
47008901--47008934	17	2.0	17	100	0	68	23	29	5	41	1.78
47013502--47013534	17	1.9	17	100	0	66	24	27	6	42	1.78
47017276--47017371	41	2.3	40	84	7	120	26	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47024847--47024945	41	2.4	41	86	3	128	26	24	20	29	1.99
47031073--47031166	29	3.3	29	73	8	84	23	13	25	37	1.92
47036917--47036991	21	3.6	21	75	7	64	16	16	13	54	1.71
47036980--47037011	16	1.9	17	93	6	57	28	9	0	62	1.26
47037494--47037538	20	2.2	20	88	0	63	20	20	11	48	1.79
47038744--47038928	101	1.8	101	88	3	282	23	16	27	32	1.96
47038740--47038930	51	3.8	50	82	4	231	23	16	28	32	1.96
47038932--47039024	45	2.1	45	93	0	159	27	19	21	31	1.97
47041561--47041961	50	7.8	50	89	3	471	20	28	22	28	1.99
47046883--47047218	51	6.6	51	79	6	319	29	15	25	30	1.95
47046879--47047216	102	3.3	100	87	3	430	29	15	25	29	1.96
47053213--47053242	14	2.1	14	100	0	60	56	0	20	23	1.42
47055391--47055474	21	4.0	21	85	4	107	36	25	22	15	1.93
47055391--47055474	44	2.0	41	83	6	105	36	25	22	15	1.93
47056664--47056695	16	2.1	16	94	5	57	40	0	0	59	0.97
47062631--47062863	43	5.5	42	77	10	231	33	25	18	21	1.96
47062586--47062908	85	3.8	85	88	1	434	33	26	18	21	1.97
47062882--47062934	26	2.0	26	88	0	79	26	32	22	18	1.97
47066729--47066774	18	2.6	18	86	3	58	41	2	0	56	1.11
47068054--47068128	28	2.6	29	75	12	75	50	4	2	42	1.35
47068846--47068871	6	4.3	6	100	0	52	38	0	0	61	0.96
47071081--47071317	27	8.8	27	82	3	219	45	18	14	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47071068--47071262	54	3.6	53	85	2	257	45	16	15	22	1.85
47071068--47071303	81	2.9	79	83	3	276	44	17	15	22	1.86
47071495--47071571	26	3.0	26	84	3	93	14	24	24	36	1.93
47072217--47072259	20	2.2	20	86	0	59	48	18	13	18	1.80
47093758--47093917	28	5.8	27	77	5	142	27	20	18	33	1.96
47093753--47093919	82	2.0	84	86	4	232	28	19	18	34	1.95
47101953--47101985	3	11.0	3	100	0	66	33	0	0	66	0.92
47102078--47102146	31	2.3	31	85	7	88	23	8	18	49	1.75
47104117--47104233	25	5.0	22	71	16	92	11	16	25	46	1.81
47104153--47104218	25	2.6	25	95	0	114	10	13	27	48	1.75
47106282--47106339	30	2.0	30	86	10	84	20	50	0	29	1.49
47110395--47110487	39	2.4	39	87	0	105	34	45	8	11	1.72
47118522--47118554	10	3.3	10	100	0	66	21	9	18	51	1.73
47124400--47124444	13	3.5	13	78	3	56	31	20	6	42	1.77
47126685--47126730	22	2.1	22	91	0	74	58	28	10	2	1.43
47127017--47127092	11	6.8	11	75	21	61	40	0	2	56	1.13
47127035--47127169	68	2.0	69	88	1	200	42	2	3	51	1.35
47127135--47127393	148	1.8	141	91	7	432	40	12	9	37	1.76
47129543--47129577	18	1.9	19	88	11	56	57	5	25	11	1.56
47131935--47132020	45	1.9	45	92	0	145	34	24	13	26	1.93
47132022--47132319	51	5.9	51	76	4	298	30	27	17	24	1.97
47132029--47132315	102	2.8	102	91	1	461	30	26	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47138027--47138106	40	2.0	40	100	0	160	40	5	7	47	1.54
47144297--47144383	41	2.1	41	97	2	167	58	0	13	27	1.36
47144365--47144411	25	2.0	24	91	8	78	51	0	19	29	1.47
47145042--47145356	113	2.8	113	83	5	379	26	22	20	30	1.98
47145832--47146010	77	2.3	76	75	10	177	32	18	18	29	1.95
47145411--47146205	266	3.0	266	94	2	1408	31	19	19	29	1.96
47146784--47146833	15	3.4	14	77	5	55	34	2	24	40	1.66
47146800--47146852	22	2.5	22	96	3	99	32	3	26	37	1.74
47146791--47146839	15	3.3	15	74	8	55	34	2	24	38	1.67
47147389--47147468	40	2.0	40	82	4	99	16	42	5	36	1.70
47148456--47148488	15	2.2	15	94	0	57	39	3	3	54	1.31
47148808--47149024	9	25.8	9	72	13	140	47	19	2	30	1.64
47148804--47148960	25	6.3	23	78	10	116	49	16	2	31	1.59
47148809--47148947	41	3.4	41	86	6	167	49	17	2	30	1.58
47148849--47149006	50	3.2	48	77	7	154	45	19	3	31	1.66
47148867--47149024	25	6.2	25	77	5	122	45	20	3	30	1.67
47148813--47149024	16	12.6	18	72	11	101	47	19	2	30	1.64
47154491--47154559	21	3.3	21	83	0	84	34	20	42	2	1.67
47154994--47155245	42	6.0	41	84	7	260	26	22	21	30	1.98
47154995--47155245	85	3.0	83	82	9	269	26	21	21	30	1.98
47154995--47155245	127	2.0	127	82	7	305	26	21	21	30	1.98
47155840--47155868	15	1.9	15	100	0	58	24	6	6	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47160483--47160536	26	2.1	26	96	0	99	33	20	14	31	1.93
47162219--47162259	21	2.0	21	85	0	55	36	19	12	31	1.89
47169818--47169885	30	2.2	31	82	7	77	36	5	29	27	1.80
47170209--47170439	102	2.3	102	90	1	356	20	19	28	31	1.97
47175710--47175755	16	2.9	16	78	12	51	45	0	2	52	1.13
47175616--47175872	120	2.1	119	98	1	496	42	2	5	49	1.39
47175830--47175877	15	3.1	15	82	5	60	47	0	2	50	1.12
47175831--47175879	16	3.1	16	80	13	57	46	0	2	51	1.12
47176015--47176105	45	2.0	44	82	2	110	35	26	5	32	1.80
47176084--47176127	16	2.8	16	89	0	61	29	34	0	36	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189