genome.fa.s20.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  85  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23555689--23556277	112	5.3	112	93	1	950	26	28	19	25	1.98
23555689--23556277	223	2.6	223	92	1	966	26	28	19	25	1.98
23556225--23556341	40	2.9	40	94	0	198	20	29	16	33	1.94
23557450--23557492	18	2.4	18	88	7	61	32	16	18	32	1.93
23558875--23558901	6	4.5	6	100	0	54	70	0	0	29	0.88
23563888--23563942	16	3.4	16	92	0	92	38	7	25	29	1.83
23563924--23564050	44	2.9	44	91	3	202	33	4	23	38	1.76
23564180--23564215	18	2.0	18	100	0	72	61	0	0	38	0.96
23564134--23564250	56	2.1	55	82	4	137	52	3	0	43	1.24
23564277--23564323	18	2.6	18	82	0	58	46	29	10	12	1.76
23564702--23564734	17	2.0	16	94	5	57	6	6	12	75	1.16
23565320--23565396	3	25.7	3	84	10	104	33	1	1	63	1.11
23566564--23566625	21	3.0	20	73	17	65	54	6	1	37	1.36
23569127--23569200	28	2.6	28	91	0	112	37	8	0	54	1.30
23569858--23569934	3	25.7	3	100	0	154	32	0	0	67	0.91
23571364--23571501	33	4.2	33	78	0	132	16	16	18	48	1.81
23575806--23575831	13	2.0	13	100	0	52	0	0	15	84	0.62
23576575--23576676	51	2.0	51	92	3	170	29	22	14	33	1.94
23582605--23582638	15	2.3	15	100	0	68	55	14	11	17	1.68
23586700--23586728	15	1.9	15	100	0	58	31	13	27	27	1.94
23591690--23591719	16	1.9	15	93	6	51	30	0	26	43	1.55
23596230--23596271	12	3.4	12	84	12	50	73	2	2	21	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23596970--23597201	72	3.3	72	85	8	295	54	14	6	25	1.62
23601310--23601354	16	2.9	16	83	3	56	73	2	0	24	0.95
23612917--23612952	18	2.0	18	100	0	72	66	0	0	33	0.92
23612917--23612962	18	2.6	18	89	0	56	65	0	0	34	0.93
23614137--23614214	37	2.1	38	85	7	106	61	0	3	34	1.14
23614147--23614296	45	3.3	45	75	20	150	59	1	6	33	1.30
23614271--23614352	43	1.9	43	82	9	105	54	2	8	34	1.44
23616038--23616530	100	5.0	99	84	4	566	23	22	22	31	1.99
23616035--23616530	194	2.5	194	85	4	636	23	22	22	30	1.99
23616088--23616464	50	7.7	50	74	4	291	23	23	22	29	1.99
23616532--23617320	128	6.2	129	90	1	1198	26	19	21	32	1.97
23616551--23617263	44	16.7	43	65	15	219	26	20	20	32	1.97
23617770--23617826	24	2.4	24	76	5	62	26	22	17	33	1.96
23618688--23618718	7	4.4	7	100	0	62	12	12	0	74	1.08
23618669--23618742	7	11.8	6	79	16	55	6	13	1	78	1.01
23619179--23619220	7	6.0	7	83	10	50	7	0	7	85	0.73
23619179--23619220	21	2.0	21	90	9	68	7	0	7	85	0.73
23619180--23619213	15	2.3	15	95	5	61	5	0	5	88	0.64
23624198--23624270	37	2.0	37	84	10	96	61	2	5	30	1.32
23624307--23624381	36	2.1	36	82	9	91	56	1	6	36	1.34
23628253--23628277	12	2.1	12	100	0	50	52	8	0	40	1.31
23652450--23653030	205	2.8	203	74	18	527	25	18	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23659878--23660058	91	2.0	91	98	0	353	44	11	10	33	1.75
23665263--23665433	9	18.6	9	67	18	50	65	2	2	29	1.19
23665374--23665433	10	6.3	10	71	11	54	71	0	3	25	1.01
23665330--23665442	47	2.4	47	78	10	115	66	1	3	28	1.18
23665330--23665430	18	5.4	19	72	12	66	67	1	3	26	1.19
23665643--23665711	19	3.6	19	69	13	52	40	4	0	55	1.20
23678492--23678570	30	2.6	30	87	0	113	18	27	15	37	1.91
23686121--23686155	16	2.1	17	89	5	54	45	0	11	42	1.40
23693553--23693616	21	2.9	23	75	17	64	43	4	3	48	1.39
23697347--23697743	40	9.9	40	81	4	426	21	27	16	33	1.95
23700097--23700130	16	2.2	16	89	5	52	50	14	8	26	1.72
23725247--23725294	4	11.8	4	91	4	78	22	2	0	75	0.91
23726298--23726343	24	1.9	24	91	8	76	36	0	2	60	1.09
23726505--23726532	9	3.1	9	100	0	56	57	10	0	32	1.33
23726605--23726645	16	2.6	16	92	0	64	43	7	2	46	1.44
23726620--23726680	22	2.8	22	79	0	68	47	1	3	47	1.28
23726407--23726638	68	3.5	66	89	6	307	45	8	5	40	1.56
23727161--23727219	4	14.2	4	80	19	68	23	0	1	74	0.91
23727161--23727236	34	2.2	36	84	13	99	23	2	2	71	1.12
23732233--23732276	7	6.7	7	78	21	51	88	0	11	0	0.51
23732242--23732277	6	6.0	6	90	9	56	86	0	13	0	0.58
23732231--23732276	24	1.9	24	91	8	76	89	0	10	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23732231--23732276	17	2.7	18	90	6	69	89	0	10	0	0.50
23733216--23733274	23	2.5	23	86	2	82	38	10	22	28	1.86
23733823--23734134	88	3.6	87	73	9	265	29	19	23	27	1.98
23733997--23734176	44	4.1	44	66	12	109	28	20	25	26	1.99
23733997--23734266	131	2.1	131	87	2	391	30	20	23	26	1.98
23734217--23734585	44	8.6	43	68	12	183	30	21	21	26	1.98
23734211--23734636	128	3.3	128	88	1	595	30	22	20	26	1.98
23735473--23735508	4	8.8	4	87	6	54	22	2	0	75	0.94
23735472--23735509	17	2.2	17	95	0	67	21	2	0	76	0.91
23736612--23736641	16	1.9	15	93	6	51	23	0	3	73	0.98
23737692--23737726	18	2.0	17	88	5	52	54	0	0	45	0.99
23737791--23737842	15	3.6	15	80	12	56	53	1	0	44	1.11
23737675--23738207	120	4.4	120	95	1	928	49	4	2	43	1.38
23737932--23737966	18	2.0	17	88	5	52	54	0	0	45	0.99
23738052--23738099	18	2.8	18	74	22	50	56	0	0	43	0.99
23738031--23738082	15	3.6	15	80	12	56	53	1	0	44	1.11
23738223--23738400	92	1.9	91	84	3	232	45	3	3	46	1.40
23738344--23738377	16	2.1	17	88	5	52	58	0	0	41	0.98
23740230--23740270	20	2.0	20	95	0	73	24	21	19	34	1.97
23746493--23746540	24	2.0	24	100	0	96	37	4	4	54	1.39
23746673--23746725	21	2.5	21	90	0	79	30	35	9	24	1.87
23746788--23746843	21	2.7	21	88	0	85	26	8	35	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23751651--23751716	33	2.0	33	85	5	89	37	10	15	36	1.82
23754090--23754140	22	2.4	20	84	15	75	31	0	3	64	1.11
23754093--23754175	23	3.6	24	87	8	109	26	1	4	67	1.18
23754359--23754464	48	2.2	48	81	1	122	23	20	29	26	1.99
23754967--23755090	49	2.5	49	81	2	133	29	27	13	29	1.94
23756359--23756419	28	2.2	27	82	11	70	45	0	3	50	1.17
23759421--23759458	8	4.9	8	96	3	69	39	0	21	39	1.53
23760873--23760917	21	2.2	21	84	4	56	31	6	2	60	1.35
23762627--23762716	44	2.0	44	100	0	180	23	15	22	38	1.92
23762839--23762864	13	2.0	13	100	0	52	46	7	7	38	1.61
23763917--23764264	172	2.0	172	100	0	696	32	14	22	30	1.94
23767782--23767835	22	2.4	23	81	6	58	51	9	0	38	1.34
23768063--23768094	14	2.1	16	88	11	50	34	12	9	43	1.75
23770965--23771032	16	4.2	16	96	0	127	25	1	36	36	1.65
23771013--23771103	45	2.0	45	85	2	121	27	6	28	37	1.82
23771248--23771289	15	2.7	16	82	14	52	52	2	0	45	1.13
23771257--23771298	15	2.9	15	82	10	52	52	0	0	47	1.00
23771251--23771633	120	3.2	120	98	0	730	48	5	2	43	1.39
23771960--23772019	18	3.4	18	64	13	52	40	10	6	43	1.64
23773439--23773504	33	2.0	33	100	0	132	42	18	27	12	1.85
23775308--23775358	16	3.3	15	76	10	50	17	7	1	72	1.18
23783632--23783667	17	2.1	18	94	5	65	41	16	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23790221--23790259	18	2.2	17	86	13	53	33	0	20	46	1.51
23790378--23790406	8	3.6	8	100	0	58	24	13	27	34	1.93
23790493--23790568	23	3.3	23	92	0	134	25	21	25	28	1.99
23798825--23798858	17	1.9	18	94	5	61	47	14	5	32	1.69
23807858--23807897	9	4.2	9	84	9	53	55	7	5	32	1.50
23807862--23807901	19	2.2	18	86	13	55	52	5	5	37	1.45
23810248--23810429	79	2.3	80	81	7	201	24	21	28	25	1.99
23810245--23810429	40	4.7	40	81	6	207	24	22	28	25	1.99
23810298--23810462	79	2.1	79	80	6	183	26	20	27	25	1.99
23815436--23815566	27	4.9	27	72	3	102	31	12	30	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189