genome.fa.s20.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  133  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38418604--38418635	7	4.6	7	96	0	55	21	31	0	46	1.52
38418597--38418635	14	2.8	14	88	0	60	17	33	0	48	1.48
38421441--38421491	16	3.5	16	66	33	51	56	11	13	17	1.66
38421850--38421897	23	2.1	23	88	7	71	18	8	35	37	1.81
38426669--38426702	15	2.3	15	100	0	68	29	5	32	32	1.81
38430899--38431103	6	34.2	6	96	0	383	49	16	0	33	1.50
38432694--38432728	16	2.1	17	89	5	54	11	2	5	80	1.00
38433106--38433156	20	2.5	20	87	6	68	29	13	15	41	1.86
38451716--38451757	16	2.7	15	85	7	57	47	2	0	50	1.14
38452311--38452371	25	2.4	25	81	10	72	37	3	0	59	1.14
38458400--38458445	22	2.1	22	95	0	83	36	8	19	34	1.83
38462277--38462324	24	2.0	24	95	0	87	22	0	18	58	1.39
38471408--38471461	19	3.1	17	82	15	65	24	31	0	44	1.54
38471412--38471472	20	3.2	18	74	21	54	21	37	0	40	1.53
38481984--38482063	36	2.2	36	79	2	88	18	12	22	46	1.83
38489829--38489971	30	4.8	30	92	0	223	29	23	13	33	1.93
38489959--38490031	29	2.5	29	90	2	110	16	28	12	42	1.84
38490022--38490092	31	2.3	30	80	4	88	21	21	12	45	1.84
38489829--38490094	30	8.8	31	82	4	219	25	22	13	37	1.91
38499444--38499484	4	10.0	4	84	5	55	26	0	0	73	0.84
38503583--38503619	9	4.1	9	92	0	65	29	10	13	45	1.77
38503672--38503702	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38505626--38505655	11	2.7	11	94	0	51	46	0	0	53	1.00
38505642--38505695	25	2.2	25	83	6	67	31	0	3	64	1.11
38507516--38507625	50	2.2	50	96	0	202	25	21	4	48	1.69
38515592--38515626	17	1.9	19	88	11	56	8	25	0	65	1.21
38515590--38515639	18	2.7	18	81	12	57	8	24	0	68	1.16
38519169--38519260	37	2.5	37	96	0	166	25	8	31	34	1.86
38528924--38529108	51	3.6	51	75	7	189	24	18	27	29	1.98
38533115--38533166	26	2.0	26	92	0	86	28	34	21	15	1.94
38533127--38533276	71	2.1	71	90	3	232	30	29	16	23	1.96
38533127--38533314	71	2.6	70	85	8	227	30	30	17	21	1.96
38533196--38533418	104	2.2	104	92	2	369	31	31	19	17	1.95
38533747--38533810	30	2.2	29	81	10	76	29	28	6	35	1.82
38533754--38533810	30	1.9	30	85	3	80	29	24	7	38	1.82
38546777--38546856	20	4.1	19	73	19	67	66	1	6	26	1.23
38546761--38546804	19	2.2	20	84	4	54	63	0	4	31	1.14
38546754--38546847	10	9.7	10	70	14	54	63	1	4	30	1.20
38546859--38546929	19	3.5	21	74	12	60	57	4	8	29	1.47
38546952--38547002	18	2.7	19	74	17	52	19	5	1	72	1.15
38549952--38550059	56	1.9	56	86	0	153	30	22	18	28	1.97
38557269--38557326	27	2.1	27	100	0	116	31	15	17	36	1.91
38558205--38558245	21	1.9	22	85	5	57	41	4	9	43	1.59
38559867--38559915	23	2.2	23	82	13	59	18	16	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38564797--38564841	23	2.0	23	90	0	72	55	17	11	15	1.68
38565580--38565620	15	2.9	14	86	10	57	51	7	0	41	1.30
38568046--38568071	12	2.2	12	100	0	52	46	0	0	53	1.00
38572357--38572393	19	1.9	19	100	0	74	37	8	10	43	1.69
38592102--38592544	69	6.4	69	86	1	539	22	24	23	30	1.99
38592094--38592544	207	2.2	207	85	2	600	22	24	23	30	1.99
38607693--38608063	183	2.0	183	98	0	715	26	16	15	41	1.88
38636058--38636120	31	2.0	31	84	0	81	47	9	6	36	1.62
38643413--38643446	16	2.1	16	100	0	68	35	32	0	32	1.58
38645726--38645910	51	3.6	51	74	5	133	30	26	17	25	1.97
38646068--38646112	16	2.8	16	96	0	81	44	13	4	37	1.64
38649376--38649690	113	2.8	114	81	2	341	28	22	19	30	1.98
38649739--38650539	259	3.0	266	89	3	1271	32	18	19	29	1.96
38651118--38651167	15	3.4	14	77	5	55	32	2	26	40	1.67
38651118--38651174	22	2.6	21	86	5	60	33	1	26	38	1.67
38651088--38651170	29	2.9	30	80	7	100	30	2	30	37	1.70
38651125--38651173	15	3.3	15	74	8	55	32	2	26	38	1.68
38651134--38651186	22	2.5	22	96	3	99	32	3	26	37	1.74
38651235--38651277	21	2.0	23	81	9	54	58	2	11	27	1.46
38651725--38651803	40	2.0	40	87	2	115	16	43	5	35	1.70
38653418--38653463	22	2.0	23	83	4	58	26	13	15	45	1.82
38653795--38653827	15	2.2	15	94	0	57	39	3	3	54	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38653741--38654037	93	3.3	92	76	17	368	40	4	5	50	1.43
38653729--38654115	177	2.2	177	98	0	747	41	4	4	49	1.43
38653918--38654063	32	4.7	32	65	17	99	39	2	5	52	1.39
38653972--38654004	15	2.2	15	100	0	66	39	0	6	54	1.25
38654178--38654232	24	2.2	26	87	6	78	58	18	0	23	1.39
38654322--38654538	9	25.8	9	71	13	131	46	19	3	30	1.66
38654364--38654477	16	7.0	16	74	11	106	46	21	1	30	1.61
38654323--38654477	41	3.8	41	80	7	163	48	19	1	30	1.60
38654318--38654538	25	8.8	25	77	7	109	47	19	3	30	1.65
38654365--38654499	41	3.3	40	82	6	146	45	21	2	30	1.64
38656307--38656468	42	3.9	41	85	10	215	28	20	20	29	1.98
38656347--38656469	41	3.0	41	91	2	192	28	19	20	31	1.97
38656559--38656601	22	2.0	22	90	0	68	48	27	13	9	1.73
38660648--38660925	138	2.0	138	100	0	556	38	9	10	41	1.71
38660895--38660949	22	2.5	22	84	0	83	43	3	12	40	1.60
38662298--38662357	20	2.8	21	85	7	77	51	15	0	33	1.43
38677491--38677588	41	2.4	41	85	0	133	27	27	23	21	1.99
38682669--38682712	17	2.5	17	79	17	54	43	4	20	31	1.72
38687531--38687767	50	4.6	51	79	6	207	22	27	21	28	1.99
38694893--38694960	21	3.4	20	84	12	86	33	4	38	23	1.75
38694903--38694960	18	3.1	18	92	7	89	32	5	37	24	1.77
38694909--38694966	18	3.1	18	79	13	62	37	3	36	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38698296--38698444	67	2.2	67	87	1	217	31	10	15	42	1.81
38698377--38698420	15	2.8	16	86	6	54	25	2	22	50	1.61
38698448--38698550	39	2.7	38	81	1	98	27	5	23	43	1.76
38699666--38699701	17	2.1	18	89	5	56	27	0	16	55	1.42
38704476--38704524	22	2.2	22	88	0	71	44	18	0	36	1.50
38708143--38708282	50	2.8	50	82	7	167	30	30	15	25	1.95
38711704--38711790	28	3.1	28	86	3	122	32	12	22	32	1.92
38718060--38718167	28	3.9	28	86	7	139	31	13	25	28	1.94
38719873--38719917	22	2.0	21	84	16	56	57	8	0	33	1.30
38720019--38720059	19	2.2	19	100	0	82	56	12	4	26	1.56
38725586--38725645	29	2.1	29	93	0	102	28	25	8	38	1.84
38728304--38728337	16	2.2	15	89	5	50	55	2	0	41	1.15
38730511--38730580	25	2.8	25	82	0	86	35	22	18	22	1.95
38731691--38731720	12	2.5	12	94	0	51	16	30	30	23	1.96
38737051--38737091	20	2.0	21	86	13	59	48	9	9	31	1.69
38738475--38738516	21	2.0	20	86	13	59	14	9	23	52	1.71
38738867--38738932	32	2.1	32	91	0	105	37	7	18	36	1.79
38741760--38741810	21	2.4	22	83	6	61	9	21	0	68	1.18
38745320--38745399	40	2.0	41	82	9	101	27	25	21	26	1.99
38752683--38752789	26	4.1	26	80	0	115	22	19	22	35	1.96
38752683--38752789	52	2.1	52	83	0	133	22	19	22	35	1.96
38753918--38754101	50	3.7	50	85	2	190	23	17	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38756636--38756688	26	2.0	26	88	0	79	24	16	30	28	1.97
38759869--38760004	50	2.7	51	86	3	177	23	18	28	29	1.98
38759873--38760014	51	2.8	50	82	7	162	23	19	28	28	1.98
38780188--38780247	29	2.0	31	83	9	79	40	15	15	30	1.87
38780651--38780733	27	3.1	26	87	3	112	20	16	20	42	1.90
38787149--38787332	40	4.6	40	85	4	219	27	27	20	24	1.99
38794618--38794841	40	5.6	40	83	4	229	26	28	20	24	1.99
38807366--38807398	9	3.7	9	88	11	50	39	12	24	24	1.89
38808250--38808282	9	3.7	9	88	11	50	39	12	24	24	1.89
38806787--38809438	884	3.0	884	99	0	5277	31	16	22	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189