genome.fa.s20.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  169  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50254828--50254899	16	4.4	16	70	19	58	30	1	23	44	1.62
50254896--50255673	212	3.7	212	96	0	1421	41	9	10	38	1.70
50259519--50259606	36	2.5	34	75	12	88	42	7	5	44	1.57
50263747--50263822	9	8.4	9	86	0	107	38	26	11	23	1.89
50263747--50263822	18	4.2	18	96	0	143	38	26	11	23	1.89
50270402--50270431	15	2.0	15	93	0	51	30	6	16	46	1.73
50274325--50274362	9	4.2	9	93	0	67	47	13	10	28	1.76
50274367--50274425	29	2.0	29	96	0	109	37	8	0	54	1.31
50274718--50275036	114	2.8	114	90	0	478	28	20	23	27	1.99
50275377--50275426	19	2.6	19	87	0	73	32	0	28	40	1.57
50275454--50275533	22	3.7	22	79	11	78	23	1	41	33	1.63
50275726--50275752	14	1.9	14	100	0	54	25	0	37	37	1.57
50275789--50275831	14	3.0	14	77	16	52	25	0	39	34	1.56
50276251--50276352	47	2.1	47	90	1	159	48	6	0	45	1.29
50280612--50280641	15	2.0	15	93	0	51	50	0	33	16	1.46
50281006--50281207	43	4.7	43	80	3	201	25	16	29	28	1.97
50280981--50281209	86	2.7	86	76	7	230	26	16	28	28	1.97
50285909--50285936	13	2.2	13	100	0	56	46	21	0	32	1.52
50285922--50286231	69	4.5	69	90	0	476	44	21	7	26	1.78
50286102--50286201	22	4.4	23	73	5	87	44	20	11	25	1.84
50286356--50286856	69	7.3	69	96	0	921	45	20	8	25	1.80
50287616--50287772	41	3.8	41	87	0	215	33	27	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50288148--50288206	28	2.0	30	81	15	70	42	11	1	44	1.51
50290181--50290340	80	2.0	81	98	1	313	41	19	23	16	1.90
50292078--50292169	47	2.0	47	100	0	184	39	13	25	22	1.90
50294215--50294304	44	2.0	44	100	0	180	15	33	0	51	1.44
50295938--50296018	35	2.4	34	78	2	81	25	19	23	30	1.98
50296887--50296964	25	3.2	23	85	5	84	71	2	23	2	1.10
50296887--50296964	4	19.0	4	71	10	50	71	2	23	2	1.10
50297832--50297938	37	2.8	38	73	12	101	27	14	23	35	1.93
50304030--50304310	44	6.1	44	68	11	168	33	16	19	30	1.94
50304070--50304302	95	2.5	95	87	1	351	33	15	19	31	1.93
50304070--50304334	95	2.8	95	81	4	241	33	15	19	30	1.93
50305905--50306058	3	48.7	3	71	19	91	30	5	2	61	1.33
50311718--50311763	23	2.1	22	84	8	58	30	13	13	43	1.81
50318449--50318501	22	2.5	21	73	11	54	41	5	11	41	1.64
50319928--50319955	14	2.0	14	100	0	56	21	7	21	50	1.72
50320116--50320212	38	2.6	38	88	3	151	5	26	10	57	1.53
50322185--50322239	16	3.3	17	77	12	60	43	0	3	52	1.18
50322224--50322269	16	2.9	16	78	12	51	45	0	2	52	1.13
50322344--50322389	16	2.9	16	78	12	51	45	0	2	52	1.13
50322174--50322627	120	3.8	120	96	1	829	42	1	6	49	1.38
50322180--50322588	38	10.3	39	67	18	150	42	1	6	49	1.39
50322831--50322879	16	3.1	16	88	8	73	24	32	2	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50329474--50330399	132	7.0	132	94	0	1597	27	26	19	26	1.99
50331172--50331209	19	2.0	19	89	0	58	28	7	0	63	1.23
50332174--50332224	14	3.6	14	84	5	66	33	0	1	64	1.05
50333603--50333934	75	4.5	74	82	7	383	40	9	8	41	1.67
50334063--50334131	34	2.0	34	97	0	129	28	28	11	30	1.92
50334905--50334946	15	2.7	15	79	13	50	54	0	11	33	1.37
50336201--50336250	25	2.0	24	96	3	91	44	24	12	20	1.85
50350747--50355385	918	5.0	914	79	7	4377	29	17	16	36	1.92
50364007--50364043	18	2.0	18	89	5	56	16	35	5	43	1.71
50366456--50366514	10	5.6	11	75	18	63	49	0	0	50	1.00
50366450--50366514	26	2.5	26	83	11	80	49	0	0	50	1.00
50366619--50366669	25	2.0	26	84	3	68	39	3	11	45	1.59
50372318--50372355	19	2.0	20	85	15	53	68	7	0	23	1.16
50372773--50372812	16	2.5	16	87	0	62	42	5	30	22	1.75
50372789--50372886	44	2.2	47	81	9	123	34	3	25	36	1.72
50373043--50373076	17	2.0	17	100	0	68	58	0	0	41	0.98
50373046--50373097	17	3.1	17	84	13	56	51	3	0	44	1.19
50373068--50373097	15	1.9	16	93	6	53	50	6	0	43	1.28
50373172--50373358	61	3.1	60	70	21	183	51	3	2	42	1.34
50373131--50373439	119	2.7	119	87	5	341	50	2	2	44	1.29
50373060--50373278	102	2.2	102	92	0	359	50	3	2	42	1.34
50373355--50373407	25	2.1	25	82	0	61	52	0	1	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50373199--50373397	61	3.3	63	70	20	204	50	3	3	43	1.32
50373386--50373412	11	2.5	11	100	0	54	59	0	0	40	0.98
50373528--50373581	15	3.9	15	72	16	53	51	0	0	48	1.00
50373397--50373978	91	6.5	91	95	0	953	46	4	3	45	1.38
50374499--50374531	15	2.2	15	100	0	66	60	12	9	18	1.57
50389991--50390068	6	12.5	6	75	12	50	15	2	6	75	1.11
50390002--50390068	25	2.6	25	77	9	64	16	1	7	74	1.11
50392544--50392570	13	2.1	13	100	0	54	29	7	22	40	1.81
50396422--50396517	42	2.3	42	85	3	122	33	20	15	30	1.94
50398296--50398351	21	2.8	20	71	10	51	41	5	16	37	1.71
50413786--50413853	35	1.9	35	100	0	136	44	11	8	35	1.72
50417000--50417036	19	1.9	19	88	0	56	10	2	8	78	1.06
50422504--50422542	6	6.7	6	88	2	53	69	10	5	15	1.34
50424732--50425288	129	4.3	129	91	2	895	31	19	23	25	1.98
50424732--50425288	257	2.2	258	93	0	929	31	19	23	25	1.98
50425358--50425480	44	2.8	44	76	2	131	29	21	26	21	1.99
50425448--50425569	44	2.8	44	81	2	129	28	16	23	31	1.96
50427013--50427038	11	2.4	11	100	0	52	46	0	0	53	1.00
50433545--50433618	22	3.3	22	75	5	60	43	20	21	14	1.88
50433610--50433717	32	3.4	32	84	1	137	37	17	21	24	1.94
50433723--50433772	26	1.9	26	91	0	82	34	26	22	18	1.96
50433763--50433824	27	2.3	26	79	15	74	32	20	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50433887--50433993	24	4.5	24	88	2	117	46	23	7	22	1.77
50433900--50434045	24	6.1	24	87	0	184	45	22	6	24	1.76
50434063--50434206	27	5.4	27	80	4	132	25	22	18	34	1.96
50434082--50434206	54	2.3	54	81	0	151	26	21	18	33	1.96
50434556--50434597	17	2.5	17	92	0	75	28	45	19	7	1.76
50434556--50434596	9	4.8	9	79	8	50	26	46	19	7	1.76
50440766--50440880	33	3.4	33	86	2	149	40	37	7	13	1.74
50441804--50441845	21	2.0	21	90	9	68	23	9	4	61	1.45
50443956--50444003	22	2.1	23	85	11	64	29	4	27	39	1.75
50456817--50456879	26	2.4	26	78	0	72	74	1	3	20	1.04
50456841--50456879	20	1.9	21	89	5	62	74	2	0	23	0.94
50456835--50456879	6	7.2	6	80	9	54	75	2	0	22	0.91
50470409--50470527	38	3.0	38	75	12	141	52	3	6	36	1.44
50472395--50472534	69	2.0	69	98	0	271	26	8	22	42	1.82
50473364--50473429	21	3.2	20	71	12	62	40	0	3	56	1.15
50474141--50474180	5	8.0	5	100	0	80	60	0	0	40	0.97
50474252--50474320	36	1.9	36	82	11	88	43	7	4	44	1.51
50478402--50478427	7	3.7	7	100	0	52	11	0	0	88	0.52
50482105--50482180	23	3.3	23	96	0	143	31	26	21	21	1.98
50482266--50482294	8	3.6	8	100	0	58	34	27	13	24	1.93
50482399--50482437	18	2.2	17	86	13	53	46	20	0	33	1.51
50491472--50491547	23	3.3	23	96	0	143	31	26	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50491634--50491662	8	3.6	8	100	0	58	34	27	13	24	1.93
50491767--50491805	18	2.2	17	86	13	53	46	20	0	33	1.51
50493302--50493425	43	2.9	43	92	0	203	25	18	29	27	1.98
50495856--50495928	36	2.0	36	89	0	110	34	10	19	35	1.87
50497309--50497360	19	2.9	17	81	10	59	36	9	17	36	1.82
50497317--50497376	19	2.8	22	85	9	72	36	6	16	40	1.75
50497342--50497386	23	2.0	23	86	4	65	33	4	15	46	1.66
50502290--50502328	19	2.0	21	85	10	55	15	10	5	69	1.34
50507618--50507691	36	2.1	36	100	0	148	37	8	10	43	1.69
50508253--50508307	26	2.2	26	83	9	69	47	1	0	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189