genome.fa.s20.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  65  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18139983--18140673	172	4.0	172	84	8	963	29	19	23	27	1.98
18140600--18140718	45	2.7	44	81	13	145	28	20	24	26	1.99
18140641--18141010	173	2.1	174	90	3	577	28	18	22	29	1.98
18140428--18140891	217	2.1	216	83	9	586	29	18	23	28	1.98
18140485--18140941	217	2.1	217	82	8	540	30	18	23	28	1.97
18140950--18141104	40	3.6	40	71	20	132	27	21	21	30	1.98
18140909--18141101	91	2.2	87	87	6	266	27	20	20	30	1.98
18143014--18143052	13	3.2	12	86	13	53	15	2	7	74	1.15
18143060--18143092	15	2.2	15	100	0	66	27	0	12	60	1.32
18156770--18156814	23	1.9	24	90	4	74	55	2	0	42	1.12
18157146--18157253	15	7.2	15	69	12	87	43	7	23	25	1.79
18157139--18157253	30	3.8	30	97	0	203	44	6	23	25	1.78
18161839--18161946	15	7.2	15	69	12	87	43	7	23	25	1.79
18161832--18161946	30	3.8	30	97	0	203	44	6	23	25	1.78
18184220--18184253	13	2.8	12	86	8	50	11	17	0	70	1.16
18192829--18193023	96	2.1	94	96	1	354	27	14	9	48	1.75
18200375--18200419	22	2.0	22	100	0	90	31	13	0	55	1.38
18203862--18203903	18	2.3	19	95	4	77	57	11	0	30	1.35
18204345--18204386	14	2.7	16	85	14	61	50	0	0	50	1.00
18204373--18204478	53	2.0	55	87	7	155	44	4	0	50	1.29
18210411--18210462	24	2.2	24	89	0	77	55	9	1	32	1.43
18215613--18215651	15	2.6	15	95	0	69	43	0	12	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18218708--18218733	3	8.7	3	100	0	52	69	0	0	30	0.89
18220052--18220133	34	2.4	34	83	0	110	30	8	15	45	1.76
18222729--18222902	25	7.0	25	70	13	101	36	20	24	18	1.94
18222763--18222852	24	3.7	23	75	18	85	33	21	27	17	1.96
18222738--18222854	49	2.4	49	84	8	150	35	20	26	17	1.95
18222785--18222902	50	2.4	49	82	4	130	36	21	25	16	1.94
18228039--18228075	15	2.5	15	100	0	74	24	27	18	29	1.98
18229625--18229764	49	2.8	50	82	7	153	31	19	29	20	1.97
18229625--18229764	25	5.7	24	72	7	102	31	19	29	20	1.97
18229625--18229812	50	3.8	50	77	8	145	34	19	27	19	1.95
18229613--18229779	25	6.8	23	71	10	84	32	19	28	19	1.96
18232332--18232394	30	2.1	30	96	0	117	23	3	11	61	1.43
18232362--18232479	24	5.0	23	79	9	96	27	3	11	57	1.49
18232437--18232491	24	2.3	24	84	12	69	32	5	5	56	1.45
18237419--18237544	60	2.1	60	85	1	164	38	5	12	42	1.66
18239088--18239145	12	4.8	12	76	0	62	24	10	17	48	1.78
18239086--18239145	24	2.5	24	88	0	84	23	10	16	50	1.75
18240815--18240948	59	2.2	60	80	5	155	38	8	19	34	1.82
18245342--18245386	23	2.0	23	82	8	56	60	15	4	20	1.52
18253770--18253863	35	2.7	35	75	11	84	42	1	5	51	1.31
18255432--18255465	6	5.8	6	86	6	52	55	0	26	17	1.42
18255432--18255466	17	2.1	17	94	0	61	57	0	25	17	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18255617--18255685	26	2.7	26	86	2	86	36	8	20	34	1.83
18256894--18256943	25	1.9	27	84	8	68	52	14	14	20	1.75
18261278--18261304	14	1.9	14	100	0	54	59	11	7	22	1.56
18271704--18271735	16	2.0	16	93	0	55	46	28	0	25	1.53
18277279--18277313	17	2.2	15	90	10	52	57	14	0	28	1.38
18278481--18278528	20	2.4	19	83	10	60	8	14	4	72	1.23
18281745--18282047	27	11.3	27	85	4	373	22	17	16	42	1.88
18281765--18282047	134	2.1	133	88	5	417	22	17	16	43	1.88
18283530--18283574	21	2.1	21	91	0	72	20	37	6	35	1.79
18288014--18288055	18	2.3	19	80	12	52	4	42	0	52	1.22
18288791--18289159	27	13.8	27	78	6	304	46	18	16	18	1.84
18288783--18289159	54	7.1	54	79	7	351	46	18	16	18	1.84
18288791--18289147	79	4.5	80	82	4	389	46	18	15	18	1.84
18288791--18289159	81	4.6	80	81	6	372	46	18	16	18	1.84
18289526--18289586	28	2.2	28	91	2	97	22	26	22	27	1.99
18296958--18297161	27	7.8	27	73	12	122	46	16	12	24	1.82
18296958--18297136	49	3.5	51	73	6	137	46	15	12	25	1.81
18296974--18297123	76	2.0	74	84	7	196	47	16	11	25	1.79
18313784--18313826	21	2.0	21	100	0	86	23	13	16	46	1.83
18321206--18321280	29	2.6	29	72	8	71	66	1	1	30	1.08
18321731--18321766	15	2.4	15	90	0	54	72	2	2	22	1.11
18321888--18321913	7	3.7	7	100	0	52	11	30	15	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18326105--18326152	3	16.3	3	80	4	53	62	0	35	2	1.07
18326469--18326571	36	2.9	37	86	2	122	18	8	24	48	1.76
18340935--18341170	114	2.1	113	91	0	382	21	22	26	30	1.98
18340985--18341374	205	1.9	204	92	1	656	19	23	25	31	1.98
18341172--18341511	113	3.0	112	88	2	484	22	23	24	29	1.99
18342039--18342077	21	1.9	21	89	5	62	20	0	38	41	1.53
18342059--18342308	89	2.8	89	95	0	455	26	1	26	45	1.61
18342292--18342336	14	3.2	14	77	0	54	11	2	48	37	1.51
18342964--18343010	22	2.2	21	85	11	60	78	0	8	12	0.95
18345767--18345916	31	4.8	30	80	9	176	47	11	2	39	1.51
18345787--18345972	56	3.2	56	78	11	214	45	11	2	40	1.54
18345767--18345980	65	3.5	63	76	17	236	46	11	2	39	1.52
18345883--18345938	22	2.6	22	88	5	80	46	10	0	42	1.38
18345852--18345972	51	2.3	54	85	9	160	45	11	2	40	1.54
18345959--18346100	9	16.7	9	67	13	68	40	16	2	40	1.61
18345964--18345996	16	2.1	16	100	0	66	45	24	0	30	1.53
18346102--18346157	25	2.2	25	83	0	67	44	14	5	35	1.68
18346138--18346171	16	2.1	16	94	0	59	52	14	0	32	1.42
18351595--18351759	66	2.5	65	86	4	215	40	19	26	13	1.89
18351784--18351848	21	3.1	21	86	0	103	32	15	46	6	1.70
18352012--18352041	9	3.2	9	90	9	51	30	0	3	66	1.07
18352199--18352403	43	4.7	43	80	4	216	20	18	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18352218--18352403	87	2.2	86	82	7	225	22	18	32	26	1.97
18352391--18352564	43	4.4	39	83	12	189	29	31	20	18	1.96
18352391--18352564	38	4.4	39	83	12	189	29	31	20	18	1.96
18354329--18354418	36	2.4	39	80	10	91	32	22	3	42	1.70
18354329--18354418	37	2.4	38	81	7	96	32	22	3	42	1.70
18356208--18356306	23	4.3	23	93	0	162	29	27	21	22	1.99
18361810--18361910	23	4.3	23	88	5	148	29	26	21	21	1.99
18361810--18361910	48	2.2	46	87	3	148	29	26	21	21	1.99
18363407--18363439	11	2.8	12	90	9	59	60	0	0	39	0.97
18363414--18363449	18	2.1	17	89	5	54	63	2	0	33	1.08
18364157--18364235	40	2.0	40	82	9	99	50	24	5	20	1.68
18366391--18366425	18	1.9	18	88	0	52	57	14	8	20	1.63
18366443--18366497	18	3.1	18	83	0	65	56	9	9	25	1.60
18367302--18367337	12	2.9	12	87	4	54	11	11	0	77	0.99
18369466--18369503	17	2.2	17	95	0	67	44	13	13	28	1.81
18369466--18369514	17	2.9	17	87	6	55	46	14	12	26	1.79
18370480--18370527	12	3.9	12	88	2	69	60	0	25	14	1.34
18370480--18370523	6	7.3	6	84	0	61	59	0	25	15	1.37
18400832--18400869	20	1.9	19	89	5	58	7	5	10	76	1.15
18402779--18402816	20	1.9	20	88	0	58	15	34	2	47	1.60
18403450--18403475	6	4.3	6	100	0	52	50	15	15	19	1.79
18406043--18406484	126	3.5	125	89	2	625	31	17	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18409508--18409537	6	5.0	6	100	0	60	16	0	50	33	1.46
18409526--18409687	22	7.6	22	72	16	130	25	0	32	41	1.60
18409520--18409714	49	3.8	50	68	20	127	23	1	33	41	1.61
18409526--18409718	106	1.8	105	86	3	280	23	1	34	40	1.62
18409675--18409728	7	8.0	7	89	6	85	14	1	42	40	1.57
18409675--18409727	27	2.0	27	92	3	90	15	1	43	39	1.57
18409677--18409728	20	2.5	20	93	3	86	13	1	42	42	1.55
18411144--18411181	20	1.9	20	84	10	51	55	7	2	34	1.43
18412130--18412166	11	3.2	12	85	11	51	48	5	18	27	1.70
18412118--18412221	51	2.0	50	83	10	129	45	2	24	27	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189