genome.fa.s20.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  84  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23307718--23308150	114	3.8	114	90	2	674	27	22	19	30	1.98
23308530--23308662	43	3.1	43	87	1	187	27	33	16	22	1.96
23308551--23308691	43	3.3	43	81	5	117	33	30	14	21	1.94
23309581--23309860	23	12.3	23	69	15	145	40	23	6	29	1.80
23309680--23309828	45	3.3	45	71	5	156	43	22	4	28	1.73
23309641--23309860	91	2.4	91	96	1	397	40	24	6	29	1.80
23309586--23309807	114	1.9	114	86	3	313	40	22	5	30	1.78
23310196--23310279	39	2.1	39	86	4	114	51	7	11	29	1.65
23312243--23313228	147	6.8	147	89	4	1490	25	17	13	44	1.84
23312243--23313212	434	2.2	427	89	4	1466	25	16	13	44	1.84
23313598--23313691	15	6.4	15	74	14	63	37	39	0	23	1.55
23313672--23313732	14	4.3	15	80	14	67	39	32	0	27	1.57
23313677--23314369	268	2.6	268	93	1	1176	41	25	2	30	1.68
23314188--23314237	21	2.3	23	86	6	68	36	42	0	22	1.54
23314188--23314244	21	2.6	21	83	5	60	36	40	0	22	1.55
23314522--23314885	114	3.2	113	88	2	520	25	26	23	25	2.00
23314960--23314985	12	2.2	12	100	0	52	46	30	15	7	1.74
23324531--23324555	6	4.2	6	100	0	50	16	0	48	36	1.46
23326682--23326802	57	2.1	57	84	6	156	23	17	7	51	1.71
23336022--23336096	25	3.0	25	78	9	80	34	13	9	42	1.76
23350778--23350854	36	2.1	36	85	4	102	41	27	14	16	1.87
23356727--23356829	53	1.9	53	94	0	179	31	6	27	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23362725--23362758	15	2.2	16	89	5	52	32	2	0	64	1.08
23365246--23365312	4	17.0	4	80	9	57	73	2	0	23	0.97
23365708--23365746	19	2.0	21	85	10	55	69	5	10	15	1.34
23365919--23365976	22	2.7	21	79	10	62	43	18	3	34	1.68
23365948--23366000	17	3.0	17	76	10	52	35	20	9	33	1.85
23365932--23365989	19	2.8	19	78	16	62	39	18	6	34	1.78
23366432--23366535	44	2.4	44	80	6	115	27	22	22	27	1.99
23366603--23366883	84	3.3	84	71	6	267	29	23	18	27	1.98
23366516--23366977	173	2.7	172	86	6	571	28	23	18	28	1.98
23366340--23366808	217	2.2	215	83	5	570	27	23	20	29	1.99
23366427--23367315	217	4.1	214	80	8	817	28	23	19	28	1.98
23366389--23367196	390	2.1	389	87	1	1154	27	23	20	29	1.98
23366597--23367019	173	2.4	173	90	4	629	28	23	19	28	1.98
23366597--23367105	173	2.9	172	85	6	561	28	23	19	28	1.98
23366516--23367315	390	2.1	390	84	3	1047	28	23	19	28	1.98
23367307--23367718	132	3.1	132	91	0	644	25	24	20	29	1.99
23374465--23374503	19	2.0	21	85	10	55	69	5	10	15	1.34
23374689--23374735	23	2.0	24	87	4	69	38	17	6	38	1.75
23391719--23391795	38	2.0	38	97	0	145	61	2	27	9	1.40
23392443--23392492	21	2.4	20	75	24	50	40	12	16	32	1.84
23404070--23404107	19	2.0	19	94	0	67	65	0	28	5	1.14
23408744--23408814	25	2.8	25	80	0	70	32	21	28	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23416083--23416140	25	2.3	25	84	0	71	34	20	24	20	1.97
23416094--23416165	25	2.9	25	85	2	92	33	16	29	20	1.95
23425640--23425670	16	1.9	16	93	0	53	25	16	25	32	1.96
23433254--23433305	22	2.3	22	87	9	70	53	9	11	25	1.67
23433313--23433356	16	2.8	16	89	0	70	40	0	11	47	1.39
23435509--23435557	26	2.0	23	84	11	62	28	4	16	51	1.63
23447702--23447732	15	2.1	15	93	0	53	70	6	3	19	1.22
23451918--23451951	3	11.3	3	100	0	68	32	0	0	67	0.91
23451984--23452091	42	2.6	41	76	8	110	40	6	3	49	1.46
23460884--23460931	24	2.0	24	91	0	78	37	4	8	50	1.52
23461026--23461071	24	2.0	23	82	4	56	6	0	32	60	1.22
23464401--23464458	15	3.9	15	76	13	57	34	3	0	62	1.12
23465949--23466015	23	2.9	24	77	14	70	64	0	0	35	0.94
23465948--23465996	25	2.0	25	88	8	73	63	0	0	36	0.95
23465962--23466012	15	3.4	14	75	21	50	66	0	0	33	0.92
23479103--23479172	23	3.0	23	83	6	88	28	14	14	42	1.84
23483522--23483820	152	2.0	152	89	0	456	35	11	8	44	1.71
23484112--23484176	30	2.3	27	86	7	94	40	0	6	53	1.26
23484101--23484180	30	2.7	29	76	21	92	38	1	5	55	1.30
23485091--23485186	49	2.0	49	82	0	120	55	11	12	20	1.68
23485713--23485836	53	2.3	53	91	0	194	25	16	33	25	1.96
23486104--23486134	16	1.9	16	93	0	53	35	6	9	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23487010--23487035	13	2.0	13	100	0	52	38	0	0	61	0.96
23487454--23487505	26	2.0	25	82	14	61	44	1	1	51	1.23
23487454--23487514	28	2.3	26	82	5	68	40	1	1	55	1.19
23489485--23489600	15	7.3	15	70	11	79	56	13	28	0	1.43
23489479--23489624	33	4.5	33	76	10	149	56	12	30	0	1.41
23489522--23489577	18	3.3	18	70	14	55	57	10	30	1	1.43
23489462--23489624	48	3.4	48	76	9	163	55	12	30	0	1.42
23489596--23489634	15	2.6	14	84	11	51	58	0	41	0	0.98
23492839--23492930	19	4.8	19	91	0	157	35	8	16	39	1.79
23492839--23492937	38	2.7	38	95	3	175	36	8	17	38	1.79
23498164--23498214	6	8.3	6	89	6	68	78	0	21	0	0.75
23498165--23498225	17	3.8	17	75	18	67	75	0	24	0	0.80
23498210--23498280	35	2.0	35	100	0	142	52	14	30	2	1.56
23499504--23499797	44	6.7	44	88	0	419	27	17	25	29	1.97
23499851--23499968	50	2.4	50	78	2	112	23	22	24	28	1.99
23500161--23500271	44	2.5	44	85	5	145	33	19	16	30	1.94
23500510--23500630	45	2.7	45	87	2	163	29	23	23	23	1.99
23501179--23501232	19	2.8	19	88	0	90	35	9	16	38	1.81
23503536--23503614	29	2.7	29	94	2	140	67	8	2	21	1.31
23507764--23507894	50	2.6	50	90	0	199	27	20	29	22	1.99
23507873--23507916	22	2.0	22	90	0	70	29	20	25	25	1.99
23512848--23512949	26	3.9	26	82	0	141	36	20	23	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23513088--23513420	27	12.3	27	75	8	180	24	15	17	42	1.88
23513088--23513420	54	6.2	55	80	10	232	24	15	17	42	1.88
23513115--23513434	107	3.0	106	84	7	378	24	15	18	41	1.89
23513129--23513446	27	11.8	27	81	6	295	24	15	18	41	1.89
23518146--23518186	20	2.0	21	85	4	57	4	43	0	51	1.23
23518159--23518193	18	1.9	18	88	0	52	2	34	0	62	1.10
23518859--23519189	27	12.3	27	76	6	242	40	18	16	23	1.91
23518859--23519189	54	6.1	55	77	6	313	40	18	16	23	1.91
23519075--23519220	27	5.4	27	77	4	116	43	19	16	21	1.88
23519405--23519496	26	3.5	26	83	2	105	14	19	25	41	1.89
23519613--23519685	30	2.5	29	88	4	103	21	21	26	30	1.99
23521201--23521242	17	2.5	17	100	0	84	47	4	21	26	1.70
23521399--23521646	136	1.8	136	98	0	478	37	5	24	32	1.78
23525141--23525255	36	3.2	35	78	2	95	41	33	11	13	1.79
23530386--23530415	14	2.1	14	93	0	51	46	3	0	50	1.18
23535149--23535186	17	2.2	17	86	9	51	50	15	5	28	1.66
23543066--23543189	45	2.8	45	83	0	140	44	16	16	21	1.87
23543160--23543266	45	2.4	45	82	3	126	42	16	18	22	1.89
23544658--23545110	42	10.9	42	88	4	526	30	20	21	26	1.98
23544658--23545110	125	3.6	126	84	4	551	30	20	21	26	1.98
23550960--23551292	18	19.5	18	64	31	93	33	0	20	45	1.54
23550960--23551292	7	39.0	9	63	33	93	33	0	20	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23551005--23551435	26	17.6	26	76	15	395	32	0	20	46	1.55
23551005--23551435	220	2.0	221	93	3	753	32	0	20	46	1.55
23551361--23551404	18	2.4	18	92	0	79	34	2	18	45	1.62
23551438--23551732	73	4.1	73	99	0	574	41	6	1	50	1.39
23551879--23551949	13	5.5	13	86	0	106	50	2	7	39	1.44
23551878--23551949	26	2.8	26	100	0	144	50	2	6	40	1.44
23551954--23552111	17	8.6	17	77	20	149	40	1	12	45	1.50
23551921--23552120	57	3.5	57	97	0	364	43	2	11	43	1.51
23553454--23553493	11	3.7	11	93	3	64	27	27	10	35	1.89
23554477--23554677	84	2.4	83	93	2	330	29	17	19	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189