genome.fa.s20.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  181  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53773875--53774092	85	2.6	85	84	2	260	33	29	14	22	1.93
53773879--53774092	42	5.0	42	82	4	216	33	29	14	21	1.93
53774222--53774255	11	2.8	13	91	8	54	44	11	8	35	1.72
53775324--53775592	103	2.6	103	94	2	461	21	20	26	31	1.98
53782656--53782721	9	7.6	9	78	10	66	33	0	18	48	1.48
53782629--53782712	36	2.4	34	96	4	150	34	0	16	48	1.47
53782775--53782801	13	2.1	13	100	0	54	37	11	0	51	1.37
53785158--53785201	22	2.0	22	82	8	54	59	9	2	29	1.41
53787862--53787957	31	3.2	31	61	19	76	34	14	10	40	1.80
53787867--53787986	59	2.0	59	98	0	231	33	15	10	40	1.81
53800838--53800911	27	2.8	27	84	10	107	47	9	12	31	1.73
53823877--53823916	13	3.1	13	89	7	55	50	7	5	37	1.53
53824300--53824351	19	2.7	19	82	8	61	71	0	0	28	0.87
53826748--53826864	41	2.9	42	83	6	143	24	23	21	30	1.99
53835881--53835962	42	2.0	42	87	4	121	18	32	26	21	1.97
53838501--53838618	45	2.5	46	83	9	132	38	3	4	53	1.37
53849402--53849809	77	5.3	76	82	2	433	42	15	17	24	1.88
53849415--53849610	40	5.1	39	67	12	127	41	14	17	26	1.88
53849402--53849805	154	2.6	153	83	2	488	42	16	17	24	1.88
53858460--53858522	21	3.0	21	83	4	65	57	3	1	38	1.24
53858465--53858534	10	6.5	11	77	9	56	57	2	2	37	1.29
53858465--53858536	11	6.8	10	79	6	54	56	2	2	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53858586--53858652	31	2.2	30	81	7	73	56	1	5	35	1.33
53859107--53859148	16	2.6	17	85	7	61	38	7	30	23	1.82
53859515--53859703	60	3.2	60	74	18	230	50	4	1	43	1.30
53859360--53859717	119	3.0	119	98	0	682	51	4	0	42	1.27
53860005--53860041	15	2.5	15	90	0	65	29	18	21	29	1.97
53860709--53860812	49	2.1	49	92	0	172	50	9	7	32	1.64
53864316--53864369	19	2.8	19	94	0	99	37	16	9	37	1.81
53864293--53864369	38	1.9	40	87	10	113	38	16	7	36	1.78
53864919--53865297	44	8.7	45	73	12	204	27	22	21	29	1.99
53865063--53865299	44	5.5	44	75	8	227	29	19	19	30	1.97
53865011--53865297	128	2.2	128	92	0	475	28	21	20	29	1.98
53865675--53865783	44	2.5	44	84	11	143	28	22	21	28	1.99
53865783--53866446	88	7.6	88	88	2	958	20	23	28	27	1.99
53866039--53866353	44	7.2	44	60	11	115	21	22	28	27	1.99
53872826--53872884	23	2.6	22	76	7	64	54	8	3	33	1.48
53873374--53873469	19	4.6	22	82	11	71	40	16	6	36	1.74
53873410--53873482	19	3.8	19	96	0	137	36	16	9	36	1.81
53874046--53874108	30	2.1	29	82	8	74	44	3	6	46	1.45
53874238--53874271	16	2.1	16	100	0	68	76	0	0	23	0.79
53875804--53875847	20	2.2	20	100	0	88	59	9	27	4	1.48
53875922--53875951	12	2.5	12	94	0	51	43	20	3	33	1.68
53877453--53877524	32	2.3	32	85	2	92	59	12	2	25	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53877470--53877530	32	1.9	32	90	3	97	55	14	4	24	1.59
53877701--53877735	13	2.7	13	86	0	52	45	11	5	37	1.64
53878805--53879045	50	4.7	50	86	3	275	26	22	27	22	1.99
53886656--53886720	21	3.2	19	75	14	58	41	4	6	47	1.49
53886794--53886847	21	2.5	22	82	8	67	53	0	0	46	1.00
53894702--53894765	27	2.4	28	81	5	69	59	3	0	37	1.13
53895918--53895946	14	2.0	15	93	6	51	37	0	0	62	0.96
53902109--53902147	20	2.0	20	85	10	53	20	7	10	61	1.52
53902752--53902783	13	2.3	15	89	10	50	75	0	0	25	0.81
53905444--53905509	31	2.1	31	86	10	91	63	0	3	33	1.10
53905462--53905495	17	2.0	17	88	0	50	64	0	0	35	0.94
53905481--53905520	12	3.2	12	79	6	53	70	0	2	27	1.01
53905427--53905549	42	2.9	42	90	4	178	62	0	2	34	1.08
53905479--53905558	25	3.0	28	80	14	80	63	0	2	33	1.08
53905475--53905520	11	4.0	11	82	17	58	69	0	2	28	1.00
53905514--53905573	29	2.1	30	84	6	79	61	0	1	36	1.06
53905506--53905574	28	2.5	28	79	11	79	66	0	1	31	1.00
53905438--53905568	42	3.2	41	72	12	117	66	0	2	31	1.04
53908820--53908857	19	2.0	19	94	0	67	50	10	7	31	1.66
53911815--53911847	15	2.2	15	89	10	50	42	9	12	36	1.74
53929373--53929407	17	2.0	18	88	5	54	60	0	5	34	1.21
53932401--53932442	21	2.1	19	86	8	57	64	0	4	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53936252--53936288	19	2.0	20	84	10	51	37	0	8	54	1.30
53936276--53936355	35	2.5	31	77	16	81	35	3	1	60	1.23
53940111--53940177	29	2.3	30	86	2	91	28	1	7	62	1.31
53942546--53942571	6	4.3	6	100	0	52	0	15	0	84	0.62
53943525--53943559	16	2.1	17	89	5	54	45	0	0	54	0.99
53943519--53943566	20	2.3	20	79	10	53	50	0	0	50	1.00
53943594--53943635	21	2.0	22	90	4	68	42	0	2	54	1.13
53946309--53946346	19	2.0	19	94	0	67	34	15	13	36	1.87
53950414--53950447	18	1.9	18	94	5	61	29	2	0	67	1.05
53951081--53951107	5	5.4	5	100	0	54	59	18	0	22	1.38
53954345--53954416	5	14.4	5	100	0	144	59	0	0	40	0.97
53956010--53956043	17	2.0	17	100	0	68	35	5	17	41	1.74
53959657--53959682	3	8.7	3	100	0	52	69	0	30	0	0.89
53960141--53960170	15	1.9	16	93	6	53	36	0	20	43	1.52
53960486--53960568	25	3.3	24	84	3	94	19	26	22	31	1.98
53964281--53964322	3	14.0	3	100	0	84	33	33	0	33	1.58
53965850--53965885	7	5.1	7	100	0	72	58	0	0	41	0.98
53966640--53966705	24	2.7	26	76	21	72	30	4	4	60	1.37
53966987--53967075	41	2.1	41	85	12	117	58	11	6	23	1.56
53970952--53970987	16	2.2	16	90	9	56	25	2	0	72	0.98
53973464--53973624	85	1.9	86	87	3	236	32	21	18	27	1.97
53975534--53975611	29	2.6	30	83	2	104	28	14	19	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53981018--53981067	19	2.5	20	77	6	57	58	4	2	36	1.29
53982147--53982280	61	2.2	60	84	6	173	52	2	0	44	1.18
53986233--53986476	50	4.7	50	86	3	299	20	29	24	25	1.99
53986232--53986478	100	2.4	105	87	6	360	21	29	23	25	1.99
53986574--53986605	13	2.5	13	94	0	55	56	12	0	31	1.37
53986817--53986874	30	1.9	30	89	0	89	31	24	3	41	1.71
53998368--53998583	90	2.4	89	81	5	240	42	11	20	25	1.86
53998368--53998613	45	5.5	45	76	9	198	40	12	20	26	1.88
54003339--54003372	16	2.1	16	100	0	68	52	23	0	23	1.47
54003696--54003766	36	2.0	36	91	0	115	45	14	12	28	1.81
54003695--54003758	17	3.6	17	70	15	58	45	14	12	28	1.81
54006981--54007017	19	1.9	19	88	0	56	29	27	8	35	1.85
54014569--54014674	42	2.5	43	84	7	146	43	17	20	17	1.88
54014661--54014702	20	2.1	20	86	8	59	45	14	19	21	1.85
54017074--54017123	20	2.5	20	83	0	55	62	0	4	34	1.14
54024044--54024121	29	2.6	30	83	2	104	38	19	14	28	1.90
54028519--54028547	13	2.1	14	93	6	51	51	0	0	48	1.00
54039848--54039978	60	2.2	58	80	10	142	43	0	2	53	1.18
54046487--54046564	29	2.6	30	83	2	104	38	19	14	28	1.90
54048473--54048633	85	1.9	86	87	3	236	27	18	21	32	1.97
54051110--54051145	16	2.2	16	90	9	56	72	0	2	25	0.98
54055149--54055185	18	2.0	19	85	15	51	32	2	5	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54055393--54055458	24	2.7	26	73	23	72	60	4	4	30	1.37
54056212--54056247	7	5.1	7	100	0	72	41	0	0	58	0.98
54056206--54056247	21	2.0	21	90	0	66	45	0	2	52	1.13
54057780--54057821	3	14.0	3	100	0	84	33	0	33	33	1.58
54062304--54062459	77	2.0	77	90	2	242	25	18	17	37	1.93
54073454--54073497	11	3.9	11	85	5	61	65	2	0	31	1.05
54084901--54084930	12	2.5	12	88	0	51	40	0	43	16	1.48
54096020--54096174	53	3.0	52	81	8	181	45	1	30	22	1.63
54097659--54097704	16	2.9	16	80	6	58	47	0	2	50	1.13
54098846--54098907	21	2.9	21	73	4	61	40	0	6	53	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189