genome.fa.s20.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  188  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56091656--56091728	36	2.0	36	97	0	137	32	8	15	43	1.76
56096797--56096869	36	2.0	36	89	0	110	32	10	16	39	1.83
56097095--56097191	49	2.0	48	85	2	131	22	16	20	40	1.91
56098282--56098407	63	2.0	63	96	1	236	32	15	22	29	1.95
56100737--56100778	15	2.8	16	79	13	54	76	0	23	0	0.79
56114651--56114703	27	2.0	27	85	7	72	37	1	3	56	1.28
56140639--56140680	15	2.8	15	85	10	59	21	9	0	69	1.17
56148464--56148542	29	2.8	29	76	14	76	34	3	7	54	1.47
56151098--56151160	20	3.3	18	83	14	81	41	4	7	46	1.54
56153684--56153833	41	3.7	41	90	3	239	22	29	21	26	1.99
56153682--56153858	82	2.2	83	83	9	229	24	28	19	27	1.99
56154256--56154288	16	2.1	15	94	5	57	33	12	12	42	1.79
56158363--56158460	28	3.5	28	76	6	99	48	18	15	17	1.81
56162400--56162425	13	2.0	13	100	0	52	30	7	15	46	1.74
56165875--56165993	61	2.0	61	81	9	145	45	1	2	50	1.25
56165969--56166016	21	2.2	22	85	3	62	45	8	2	43	1.45
56166171--56166239	16	4.2	16	92	3	120	24	1	37	36	1.65
56166171--56166239	33	2.1	32	94	2	120	24	1	37	36	1.65
56166475--56166509	18	2.0	17	88	5	52	54	0	0	45	0.99
56166458--56166841	120	3.2	120	95	2	716	47	5	2	44	1.40
56166716--56166750	18	2.0	17	88	5	52	54	0	0	45	0.99
56169857--56169966	33	3.3	33	81	11	136	31	8	17	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56169913--56170015	51	2.0	50	94	5	181	28	7	18	45	1.77
56170082--56170262	86	2.1	86	98	1	355	47	7	4	40	1.52
56172593--56172633	21	1.9	22	90	5	66	41	21	24	12	1.87
56180774--56181012	116	2.1	116	99	0	469	21	25	2	51	1.59
56181157--56181196	20	2.0	20	95	0	71	37	35	17	10	1.83
56192965--56193010	22	2.0	24	87	8	69	45	0	21	32	1.52
56193489--56193532	21	2.1	21	87	8	63	36	0	15	47	1.46
56194081--56194131	24	2.1	24	88	0	75	21	25	15	37	1.93
56194095--56194158	24	2.6	24	85	11	78	18	25	20	35	1.95
56195158--56195204	24	2.0	24	84	16	62	31	0	17	51	1.46
56195175--56195226	21	2.5	21	73	14	54	36	0	15	48	1.45
56195360--56195435	39	2.0	38	86	2	107	28	17	21	32	1.95
56195637--56195676	20	2.0	20	100	0	80	40	10	20	30	1.85
56201114--56201208	37	2.4	40	83	13	117	51	0	4	44	1.21
56201210--56201284	25	3.0	25	74	12	66	72	2	20	5	1.17
56201959--56202005	24	2.0	24	84	16	62	31	0	17	51	1.46
56202187--56202264	37	2.1	37	85	2	102	28	17	20	33	1.96
56202162--56202296	40	3.4	40	75	7	132	28	16	22	32	1.95
56205996--56206041	21	2.2	21	84	7	58	47	21	4	26	1.69
56210889--56210960	32	2.2	32	83	9	85	38	8	12	40	1.73
56211984--56212087	52	2.0	52	88	3	156	25	26	25	22	2.00
56222608--56222643	12	2.9	13	92	8	58	41	44	0	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56222625--56222740	39	3.0	38	92	2	187	50	25	2	20	1.61
56222873--56222933	17	3.4	17	68	12	50	32	3	13	50	1.57
56222868--56222938	37	1.9	37	97	0	133	33	4	15	46	1.65
56227624--56227668	22	2.1	22	84	12	58	57	4	0	37	1.19
56232048--56232157	37	2.8	39	76	9	116	32	25	16	25	1.96
56232290--56232339	15	3.2	15	76	20	57	50	14	0	36	1.43
56232317--56232363	24	2.0	24	84	16	62	51	17	0	31	1.46
56236813--56236853	3	13.7	3	84	0	55	63	2	0	34	1.08
56237666--56237706	5	8.2	5	94	0	73	60	2	0	36	1.10
56244234--56244280	23	2.0	23	88	8	69	55	4	0	40	1.19
56245098--56245138	5	8.2	5	94	0	64	60	4	0	34	1.18
56250012--56250082	2	35.5	2	94	0	124	50	46	0	2	1.16
56252324--56252429	41	2.6	41	92	0	167	21	19	24	33	1.97
56258957--56259017	20	3.2	20	82	11	67	31	1	4	62	1.26
56261955--56262029	36	2.1	36	94	0	132	37	10	14	37	1.81
56266493--56266517	11	2.3	11	100	0	50	60	8	0	32	1.26
56266785--56266851	26	2.6	26	72	13	66	47	1	0	50	1.10
56266784--56266894	34	3.1	36	75	20	101	47	2	0	49	1.15
56267608--56267650	20	2.2	19	83	4	50	46	6	2	44	1.43
56268287--56268508	113	1.9	114	90	3	349	32	13	20	32	1.92
56269031--56269213	52	3.5	53	93	2	289	52	0	22	24	1.51
56271328--56271352	13	1.9	13	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56271935--56272072	57	2.4	57	85	3	197	17	23	18	40	1.91
56272251--56272275	13	1.9	13	100	0	50	84	0	0	16	0.63
56272292--56272323	6	5.3	6	100	0	64	81	0	0	18	0.70
56277256--56277300	22	2.0	23	83	12	58	44	2	2	51	1.26
56282891--56282974	41	2.0	41	97	0	159	26	9	8	55	1.60
56295226--56295283	22	2.7	21	86	7	80	34	3	18	43	1.68
56300340--56300382	23	1.9	23	85	4	61	41	2	13	41	1.57
56304898--56304939	21	2.0	21	100	0	84	38	28	9	23	1.86
56305682--56305732	16	2.8	19	67	27	56	50	11	0	37	1.39
56305650--56305836	96	2.0	95	88	5	281	46	8	5	39	1.57
56308225--56308262	2	19.0	2	100	0	76	50	0	50	0	1.00
56311629--56311670	16	2.8	16	89	7	61	54	0	4	40	1.21
56319094--56319459	103	3.5	106	92	4	581	30	30	19	18	1.96
56319784--56319847	30	2.2	29	81	10	76	29	28	6	35	1.82
56319791--56319847	30	1.9	30	85	3	80	29	24	7	38	1.82
56326634--56326685	26	2.0	26	96	0	95	28	34	23	13	1.92
56326602--56326867	104	2.6	103	93	1	453	30	30	20	18	1.96
56327193--56327256	30	2.2	29	81	10	76	29	28	6	35	1.82
56327200--56327256	30	1.9	30	85	3	80	29	24	7	38	1.82
56332589--56332621	16	2.1	16	100	0	66	48	12	27	12	1.76
56335985--56336032	25	1.9	25	100	0	96	58	0	8	33	1.28
56336155--56336217	25	2.5	25	89	0	99	28	19	39	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56336353--56336493	40	3.5	40	81	1	156	15	19	19	44	1.86
56339284--56339333	12	4.2	12	73	21	52	38	0	0	62	0.96
56339282--56339339	23	2.6	24	75	22	63	39	0	0	60	0.97
56339284--56339337	16	3.1	17	79	15	58	37	0	0	62	0.95
56353985--56354103	59	2.0	59	100	0	238	33	11	15	39	1.83
56362166--56362249	43	2.0	43	88	4	125	29	17	22	29	1.97
56365702--56365747	10	4.5	10	83	2	56	26	2	23	47	1.63
56366489--56366546	20	2.8	21	78	5	64	37	15	20	25	1.92
56377935--56377998	33	1.9	33	93	0	110	37	14	18	29	1.90
56388962--56389002	17	2.4	17	91	0	64	26	31	12	29	1.92
56392621--56392683	20	3.2	19	79	18	67	33	0	33	33	1.58
56392632--56392687	27	2.1	27	90	6	87	28	0	32	39	1.57
56392739--56392780	13	3.0	14	83	16	52	38	7	26	28	1.82
56392900--56392953	14	3.8	14	76	11	56	16	0	24	59	1.37
56392907--56392952	21	2.2	21	84	7	58	17	0	26	56	1.41
56398915--56398944	12	2.6	11	94	5	51	83	0	3	13	0.77
56399136--56399181	13	3.4	14	82	11	60	56	2	8	32	1.42
56400553--56400663	44	2.5	44	86	2	152	27	20	21	29	1.98
56400741--56400904	44	3.7	44	93	0	256	29	24	13	32	1.93
56400741--56401780	133	7.9	130	80	6	956	29	24	15	31	1.95
56400996--56401780	44	17.7	44	80	5	837	29	23	15	30	1.95
56400996--56401780	89	8.9	89	82	3	755	29	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56400713--56401805	266	4.2	264	81	7	1065	29	24	15	31	1.96
56403919--56403945	4	6.8	4	100	0	54	48	0	25	25	1.52
56403954--56403996	18	2.4	18	92	0	68	60	6	18	13	1.55
56411117--56411153	17	2.2	17	95	0	65	78	2	18	0	0.87
56411120--56411169	22	2.2	23	85	3	66	74	4	20	2	1.08
56412503--56413016	50	10.3	50	69	5	285	29	22	22	25	1.99
56412410--56413419	199	5.1	198	87	4	1406	30	21	22	25	1.99
56412980--56413052	37	2.0	37	86	0	101	26	28	23	21	1.99
56412937--56413104	87	1.9	86	85	1	228	30	24	20	25	1.99
56413031--56413395	50	7.3	50	70	1	230	30	22	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189