genome.fa.s20.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  112  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31311210--31311405	50	3.7	50	81	6	203	23	27	21	27	1.99
31316562--31316712	28	5.4	28	86	5	209	30	23	22	23	1.99
31316811--31316861	26	2.0	26	84	0	66	37	25	17	19	1.94
31317074--31317408	81	4.1	80	79	6	340	23	16	17	42	1.89
31317075--31317350	27	10.3	26	81	7	279	22	17	17	43	1.88
31319863--31319987	50	2.5	50	84	1	162	26	25	18	29	1.98
31319863--31319987	25	5.0	24	75	13	101	26	25	18	29	1.98
31320129--31320201	31	2.4	31	82	15	82	47	6	16	28	1.72
31321612--31321644	16	2.1	16	100	0	66	36	6	36	21	1.78
31321877--31321911	18	2.0	17	88	5	52	54	0	0	45	0.99
31321852--31322606	120	6.3	120	95	0	1296	48	4	2	44	1.36
31321995--31322031	16	2.2	17	86	13	51	54	0	2	43	1.14
31322115--31322151	16	2.2	17	86	13	51	54	0	2	43	1.14
31322235--31322271	16	2.2	17	86	13	51	54	0	2	43	1.14
31322355--31322391	16	2.2	17	86	13	51	54	0	2	43	1.14
31323249--31323286	19	2.0	19	100	0	76	31	26	5	36	1.79
31325133--31325202	34	2.1	34	94	0	122	31	11	31	25	1.91
31327338--31327383	23	2.0	23	86	0	65	45	21	4	28	1.71
31329164--31329194	7	4.4	7	91	0	53	29	0	35	35	1.58
31329150--31329194	14	3.1	14	83	3	54	31	0	31	37	1.58
31329291--31329443	83	1.9	81	84	5	209	27	0	28	43	1.60
31333615--31333842	43	5.3	43	90	3	208	18	17	32	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31333642--31333842	86	2.3	86	95	0	357	17	17	34	29	1.94
31335367--31335399	16	2.2	16	89	10	52	39	0	9	51	1.34
31340340--31340406	21	3.2	21	68	16	57	20	22	35	20	1.96
31352982--31353078	28	3.5	28	84	0	122	29	11	25	32	1.91
31358101--31358185	42	2.0	42	95	0	152	29	30	11	28	1.92
31359537--31359691	43	3.6	42	75	14	147	23	16	27	32	1.96
31371805--31371860	29	1.9	29	85	7	78	25	16	19	39	1.91
31373041--31373088	24	2.0	25	88	8	73	54	2	2	41	1.24
31373072--31373136	27	2.4	26	87	5	85	63	4	0	32	1.15
31377391--31377436	21	2.2	21	84	0	56	60	0	10	28	1.30
31378575--31378623	20	2.4	21	80	6	57	59	0	2	38	1.09
31381842--31381876	17	2.1	17	100	0	70	34	0	0	65	0.93
31381958--31381996	18	2.3	17	86	8	53	35	5	0	58	1.20
31381958--31382000	16	2.6	16	85	7	50	39	4	0	55	1.20
31381786--31382381	120	5.0	120	93	2	1011	42	1	4	51	1.30
31382163--31382336	38	4.4	37	68	18	100	45	1	4	48	1.30
31382514--31382609	45	2.2	44	88	5	140	36	28	3	32	1.73
31382595--31382643	16	3.1	16	84	0	71	24	30	4	40	1.74
31383473--31383601	31	4.0	33	80	12	153	38	3	2	55	1.28
31384606--31384662	3	19.0	3	100	0	114	66	0	0	33	0.92
31386423--31386490	30	2.2	31	85	12	88	52	8	1	36	1.42
31386863--31387118	43	6.0	42	84	5	282	26	31	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31392113--31392159	21	2.2	21	88	3	67	36	38	0	25	1.56
31392095--31392135	14	2.9	14	81	0	55	31	43	0	24	1.54
31392123--31392164	21	2.0	21	90	0	66	40	35	0	23	1.55
31393208--31393526	122	2.6	122	85	4	412	30	31	19	17	1.95
31393177--31393549	41	9.1	41	85	4	412	31	30	18	19	1.96
31408385--31408428	13	3.4	13	84	12	63	47	0	22	29	1.51
31408385--31408453	26	2.6	27	81	2	68	44	2	20	31	1.66
31411523--31411681	61	2.6	60	81	7	169	23	23	33	20	1.97
31412225--31412314	9	9.6	9	83	9	117	38	27	8	24	1.85
31412223--31412314	38	2.4	39	83	7	127	40	27	8	23	1.84
31412310--31412417	17	6.1	17	68	15	67	50	14	2	32	1.58
31412312--31412451	37	3.8	37	85	7	185	48	15	3	32	1.62
31412312--31412364	20	2.8	19	75	8	56	50	15	1	32	1.54
31413667--31413706	16	2.5	16	91	0	62	27	5	32	35	1.79
31420392--31420710	173	1.8	173	86	1	460	20	23	31	24	1.98
31421188--31421314	62	2.0	62	87	3	184	23	23	32	20	1.98
31426470--31426510	18	2.3	18	87	4	57	41	14	4	39	1.67
31427181--31427245	22	3.0	22	76	0	67	44	16	21	16	1.86
31427236--31427295	32	1.9	32	89	3	95	38	13	23	25	1.91
31427240--31427314	32	2.4	31	82	10	82	40	17	20	22	1.92
31427314--31427367	26	2.1	26	85	0	72	37	24	22	16	1.94
31427348--31427419	27	2.7	28	73	14	71	34	20	23	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31427483--31427540	24	2.4	24	88	0	80	48	24	6	20	1.74
31427585--31427742	53	3.0	52	80	5	183	24	24	19	31	1.98
31427585--31427742	27	6.0	26	81	8	176	24	24	19	31	1.98
31427747--31427808	27	2.3	26	91	5	97	27	17	14	40	1.89
31427762--31427820	27	2.2	27	93	0	100	28	11	18	40	1.86
31427819--31427897	27	2.9	27	90	0	122	26	16	17	39	1.91
31434196--31434251	29	1.9	29	92	0	94	44	26	8	19	1.80
31436577--31436652	23	3.3	23	86	0	107	30	25	21	23	1.99
31439651--31439726	23	3.3	23	84	0	107	30	25	21	23	1.99
31457251--31457359	7	15.6	7	76	3	78	45	0	22	31	1.58
31457252--31457355	21	5.0	21	80	2	93	46	0	20	32	1.57
31458850--31458898	18	2.7	18	80	0	62	38	16	2	42	1.60
31471536--31471578	5	8.6	5	78	0	50	39	2	18	39	1.64
31471536--31471578	20	2.2	20	91	0	68	39	2	18	39	1.64
31474459--31474512	25	2.2	25	90	6	83	29	3	18	48	1.65
31489697--31489757	32	1.9	32	96	0	113	26	3	22	47	1.67
31495403--31495441	20	1.9	21	85	15	55	43	0	0	56	0.99
31501108--31501171	6	10.3	6	73	17	51	73	3	20	3	1.11
31501108--31501166	25	2.4	25	80	11	68	72	3	20	3	1.13
31501398--31501444	24	2.0	24	84	16	62	34	0	14	51	1.43
31506245--31506403	43	3.7	42	77	9	146	30	24	18	26	1.98
31506247--31506362	42	2.7	43	82	1	144	30	24	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31518284--31518522	50	4.7	50	78	7	191	24	27	20	28	1.99
31526998--31527229	120	1.9	120	97	0	437	33	28	16	21	1.95
31532323--31532972	343	1.9	344	90	1	1045	23	22	20	33	1.97
31533300--31533347	18	2.7	18	78	9	62	39	16	2	41	1.60
31538952--31538987	16	2.2	16	95	0	63	41	5	25	27	1.77
31538969--31539061	44	2.1	44	92	6	152	33	4	25	36	1.76
31548996--31549047	18	2.7	19	77	14	54	40	5	19	34	1.75
31549951--31550036	35	2.5	35	90	0	136	25	26	18	29	1.98
31551216--31551263	25	1.9	25	83	8	62	56	16	6	20	1.62
31552120--31552285	9	18.4	9	82	2	199	40	22	11	25	1.87
31552387--31552430	18	2.4	18	88	0	61	13	2	43	40	1.57
31555895--31555937	19	2.4	17	78	14	50	37	11	2	48	1.52
31555900--31555937	19	2.0	19	94	0	67	34	10	2	52	1.50
31556641--31556677	19	1.9	19	94	0	65	59	0	0	40	0.97
31556641--31556687	19	2.5	19	85	0	58	53	2	2	42	1.25
31559773--31559800	12	2.3	12	100	0	56	7	17	7	67	1.37
31561006--31561075	24	3.0	23	78	2	68	25	8	18	47	1.77
31574026--31574155	37	3.5	37	77	4	127	36	16	13	34	1.87
31579925--31579989	30	2.1	31	85	2	87	46	18	3	32	1.65
31581628--31581663	16	2.2	17	95	5	65	19	5	0	75	1.00
31582446--31582489	11	3.9	11	84	3	52	56	0	9	34	1.31
31587956--31587996	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31594496--31594520	13	1.9	13	100	0	50	64	20	8	8	1.46
31599362--31599415	2	27.0	2	80	0	63	5	50	1	42	1.36
31599362--31599415	12	4.5	12	85	0	72	5	50	1	42	1.36
31600298--31600335	5	7.6	5	96	0	58	76	0	5	18	0.97
31606499--31606790	151	1.9	151	95	0	530	44	7	11	36	1.70
31608433--31608655	119	1.9	120	83	6	292	25	27	21	24	1.99
31608431--31608655	40	5.7	40	84	6	278	25	28	21	24	1.99
31622066--31622234	80	2.1	80	81	4	189	28	27	19	24	1.99
31622103--31622234	40	3.3	40	86	1	183	30	27	18	23	1.98
31622106--31622287	80	2.3	81	82	8	203	29	27	19	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189