genome.fa.s20.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  173  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51396969--51397019	17	2.9	17	76	18	50	47	0	0	52	1.00
51404565--51404706	43	3.3	43	85	0	167	23	14	28	33	1.94
51408612--51408788	45	4.0	45	82	3	216	25	14	24	35	1.93
51414591--51414624	15	2.3	15	94	0	59	20	14	14	50	1.78
51415017--51415059	18	2.5	17	82	14	52	62	2	2	32	1.20
51415594--51415650	29	1.9	30	89	3	89	52	5	1	40	1.34
51424151--51424531	190	2.0	190	96	0	699	34	22	17	25	1.96
51425872--51425926	25	2.2	25	83	6	67	69	9	0	21	1.16
51432516--51432584	21	3.3	21	72	0	66	37	14	28	18	1.91
51432534--51432674	42	3.4	42	75	5	106	46	14	22	16	1.84
51432612--51432674	21	3.0	21	69	0	54	47	17	20	14	1.82
51432733--51432795	24	2.6	24	92	0	99	23	30	7	38	1.84
51434691--51434746	11	5.1	11	73	16	53	69	5	0	25	1.09
51438713--51438754	6	7.2	6	89	5	68	0	16	0	83	0.65
51438708--51438754	18	2.7	17	87	6	67	0	17	0	82	0.66
51442302--51442334	15	2.2	15	100	0	66	48	21	12	18	1.80
51450751--51450802	15	3.4	15	77	17	54	40	0	0	59	0.97
51453781--51453838	27	2.1	27	84	6	73	53	1	10	34	1.45
51453838--51453880	23	1.9	22	86	13	61	46	9	16	27	1.77
51453838--51453880	22	1.9	23	86	13	63	46	9	16	27	1.77
51454214--51454264	3	17.0	3	76	15	52	64	1	0	33	1.05
51454214--51454264	15	3.4	15	89	5	68	64	1	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51455431--51455462	16	2.0	16	93	0	55	12	6	40	40	1.68
51455664--51455702	17	2.3	18	86	8	55	61	0	5	33	1.18
51468110--51468160	26	2.0	26	84	0	66	49	3	1	45	1.32
51483210--51483248	20	1.9	21	94	5	71	35	10	7	46	1.67
51483811--51483843	2	16.5	2	100	0	66	51	0	0	48	1.00
51498278--51498321	21	2.1	21	100	0	88	65	4	20	9	1.38
51500458--51500499	11	3.4	12	84	15	59	4	7	4	83	0.91
51502714--51503044	178	1.9	179	90	0	538	40	10	15	33	1.82
51504268--51504306	14	2.8	13	81	11	51	41	0	0	58	0.98
51506975--51507022	19	2.5	20	82	3	62	35	0	2	62	1.07
51509185--51509221	9	4.1	9	92	0	65	45	13	10	29	1.77
51509574--51509642	19	3.7	19	74	18	65	20	31	0	47	1.50
51513954--51513991	20	1.9	20	94	0	67	47	2	0	50	1.15
51520985--51521009	3	8.3	3	100	0	50	0	36	0	64	0.94
51527700--51527769	24	2.9	24	76	2	77	18	4	20	57	1.57
51532527--51532576	11	4.6	11	75	20	52	72	18	6	4	1.22
51533391--51533452	25	2.3	27	83	8	74	37	0	1	61	1.06
51543647--51543714	29	2.3	29	90	5	102	11	8	47	32	1.71
51548931--51549000	34	2.1	34	83	5	88	30	12	14	42	1.83
51550457--51550552	31	3.1	31	93	3	165	46	12	9	31	1.73
51553571--51553626	29	1.9	29	85	7	78	1	14	12	71	1.23
51553591--51553696	22	4.9	22	78	6	92	4	15	11	68	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51553624--51553662	12	3.4	12	82	13	55	2	10	12	74	1.17
51553593--51553698	44	2.4	44	83	10	119	4	15	11	68	1.35
51554261--51554354	31	3.0	31	93	3	161	46	13	7	31	1.71
51557269--51557318	24	2.0	25	84	3	66	52	4	8	36	1.50
51566409--51566506	48	2.0	48	98	0	187	20	19	13	46	1.83
51567528--51567552	12	2.1	12	100	0	50	48	0	44	8	1.32
51577495--51577532	20	1.9	20	94	0	67	42	2	0	55	1.14
51577568--51577601	11	2.9	12	91	8	52	26	0	8	64	1.22
51587103--51587143	3	13.7	3	89	0	64	65	2	0	31	1.05
51587940--51587974	5	7.0	5	93	0	61	60	2	0	37	1.12
51596114--51596152	6	6.3	6	94	5	69	66	0	0	33	0.92
51596114--51596149	13	2.8	13	95	4	65	69	0	0	30	0.89
51596116--51596152	19	1.9	19	100	0	74	67	0	0	32	0.91
51600525--51600552	7	4.0	7	100	0	56	0	71	0	28	0.86
51601457--51601504	6	8.0	6	92	0	78	0	16	33	50	1.46
51607208--51607300	19	5.1	18	72	13	66	68	1	1	29	1.03
51607227--51607293	28	2.5	28	80	11	77	65	1	1	31	1.10
51607222--51607298	27	2.7	29	77	18	90	66	1	1	31	1.08
51614377--51614449	36	2.0	36	91	0	119	45	2	17	34	1.63
51617291--51617319	14	2.0	15	93	6	51	10	13	0	75	1.04
51620158--51620197	21	1.9	21	100	0	80	42	17	25	15	1.88
51620340--51620618	144	2.0	138	87	9	392	45	17	4	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51620498--51620529	12	2.7	12	95	0	55	43	21	0	34	1.53
51623202--51623259	23	2.5	23	85	0	80	51	25	6	15	1.68
51624345--51624425	41	2.0	41	80	4	92	23	35	25	14	1.93
51625549--51625597	22	2.3	20	83	13	55	77	4	2	16	1.01
51626827--51626873	22	2.2	22	85	11	62	40	4	0	55	1.19
51628363--51628481	25	4.7	24	74	14	69	52	8	14	25	1.69
51628358--51628481	12	9.8	12	70	13	70	50	8	14	26	1.70
51628425--51628488	13	4.7	13	77	9	65	54	7	12	25	1.64
51628477--51628514	19	2.0	19	85	10	51	63	7	13	15	1.51
51630686--51630733	23	2.2	23	85	7	64	81	4	0	14	0.84
51630648--51630722	39	1.9	39	81	5	89	73	4	1	21	1.07
51630686--51630727	21	2.2	19	83	12	50	80	2	0	16	0.81
51643779--51643807	12	2.3	13	94	5	51	24	0	0	75	0.80
51662378--51662435	26	2.2	25	79	8	62	63	5	1	29	1.25
51662592--51662632	21	1.9	22	85	5	57	26	0	4	68	1.10
51664669--51664856	45	4.2	45	86	4	247	34	27	16	21	1.95
51688422--51688483	20	3.0	21	77	13	67	59	0	8	32	1.26
51688502--51688552	17	2.8	18	79	11	59	27	3	1	66	1.20
51688502--51688551	10	5.4	9	75	20	50	28	2	2	68	1.12
51688669--51688808	9	14.7	10	67	25	56	34	2	1	62	1.16
51688670--51688770	19	5.3	19	74	10	89	31	2	0	64	1.15
51688669--51688808	19	7.4	19	68	15	58	34	2	1	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51688670--51688808	10	14.6	10	68	21	68	33	2	1	62	1.16
51688791--51688821	16	2.0	16	93	6	55	35	0	0	64	0.94
51688735--51688822	26	3.3	27	83	10	92	36	0	2	61	1.09
51697455--51697523	25	2.8	25	77	0	75	34	15	23	26	1.95
51697513--51697591	24	3.2	24	73	8	70	36	18	26	17	1.94
51697646--51697720	26	2.9	26	86	4	98	38	22	20	18	1.93
51705165--51705205	4	10.5	4	94	5	75	48	0	24	26	1.51
51710684--51710726	6	7.2	6	94	0	77	65	0	0	34	0.93
51711012--51711228	90	2.4	87	82	8	285	33	9	18	38	1.83
51714830--51714866	19	2.0	19	89	5	58	35	0	8	56	1.29
51714835--51714906	19	3.7	18	76	10	63	30	0	9	59	1.29
51714835--51714907	20	3.7	20	80	10	80	30	0	10	58	1.32
51715759--51715805	19	2.5	20	82	10	62	42	14	6	36	1.72
51715777--51715811	19	1.9	18	88	11	54	40	11	5	42	1.65
51717923--51717958	18	1.9	20	88	11	58	36	0	0	63	0.94
51717995--51718203	94	2.2	94	80	7	235	35	18	10	35	1.85
51718885--51719068	86	2.1	86	78	11	187	41	10	8	39	1.71
51725076--51725144	3	23.0	3	100	0	138	66	0	33	0	0.92
51725604--51725631	8	3.5	8	100	0	56	35	0	39	25	1.56
51725905--51726072	86	2.0	84	84	4	221	38	22	7	31	1.83
51726117--51726173	26	2.2	25	75	9	62	59	1	3	35	1.25
51726141--51726174	16	2.1	16	94	0	59	55	0	5	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51726421--51726477	28	2.1	28	87	9	82	36	5	5	52	1.47
51726425--51726485	29	2.2	29	91	5	99	36	3	3	57	1.31
51726461--51726506	19	2.4	18	86	13	58	23	4	2	69	1.17
51726598--51726761	86	1.9	86	82	6	208	34	10	15	39	1.81
51727182--51727217	18	2.1	18	90	10	58	61	0	0	38	0.96
51727192--51727223	5	6.8	5	86	13	50	62	0	0	37	0.95
51728206--51728250	23	2.0	22	82	4	54	57	4	4	33	1.38
51733972--51734248	141	2.0	141	81	2	333	35	13	20	29	1.91
51736113--51736161	17	2.8	18	81	9	57	46	4	18	30	1.67
51736119--51736165	17	2.7	17	83	3	58	48	6	17	27	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189