genome.fa.s20.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  160  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48068219--48068954	44	16.2	44	73	8	434	29	18	17	34	1.94
48068228--48068639	89	4.6	88	80	2	369	29	19	16	34	1.94
48068228--48068639	133	3.1	133	80	1	403	29	19	16	34	1.94
48068808--48069001	51	3.9	50	70	15	143	29	17	18	34	1.94
48068834--48069007	96	1.8	96	89	2	278	29	17	19	33	1.95
48074994--48075448	44	10.3	44	80	1	424	29	18	17	35	1.93
48074994--48075441	89	5.1	88	81	1	475	29	18	17	35	1.94
48075021--48075448	133	3.2	131	80	3	462	29	17	17	34	1.94
48075573--48075604	15	2.1	15	94	0	55	15	6	9	68	1.36
48076677--48076714	20	2.0	20	84	5	51	57	5	5	31	1.43
48084568--48084786	76	2.9	75	78	4	233	38	19	14	27	1.90
48085975--48086032	28	2.1	28	100	0	116	27	10	6	55	1.59
48089707--48089742	15	2.3	16	90	4	56	36	5	2	55	1.38
48089707--48089758	16	3.3	15	84	7	59	36	7	1	53	1.41
48089707--48089758	15	3.3	14	78	19	50	36	7	1	53	1.41
48092352--48092397	19	2.4	21	79	20	64	50	0	0	50	1.00
48096476--48096532	10	5.8	10	80	12	64	40	1	0	57	1.09
48110083--48110150	27	2.5	26	75	15	68	55	4	8	30	1.50
48110508--48110558	3	17.0	3	76	15	52	64	1	0	33	1.05
48110508--48110558	15	3.4	15	89	5	68	64	1	0	33	1.05
48111027--48111052	6	4.3	6	100	0	52	30	0	69	0	0.89
48111162--48111202	16	2.7	16	85	7	50	17	2	0	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48111800--48111825	13	2.0	13	100	0	52	7	0	30	61	1.24
48112432--48112843	147	2.8	148	82	9	502	33	20	16	29	1.95
48112432--48112843	76	5.6	71	84	6	430	33	20	16	29	1.95
48112803--48112889	42	2.0	43	91	2	140	33	20	16	29	1.94
48112902--48113220	74	4.4	73	83	4	310	31	22	16	29	1.96
48113164--48113276	56	2.0	56	89	3	174	28	24	17	29	1.97
48126000--48126050	3	17.0	3	76	15	52	64	1	0	33	1.05
48126000--48126050	15	3.4	15	89	5	68	64	1	0	33	1.05
48127289--48127314	13	2.0	13	100	0	52	7	0	30	61	1.24
48128872--48128979	15	7.2	15	69	12	78	44	7	21	26	1.78
48128866--48128989	30	4.1	30	91	1	194	43	6	23	26	1.78
48133576--48133683	15	7.2	15	70	12	87	44	7	20	27	1.78
48133570--48133693	30	4.1	30	92	1	185	43	6	22	27	1.77
48137931--48137962	6	5.3	6	92	0	55	50	0	31	18	1.48
48137926--48137963	18	2.1	19	95	5	69	55	0	28	15	1.41
48138106--48138181	26	2.9	26	84	3	82	39	10	15	34	1.82
48149183--48149258	37	2.1	37	94	0	134	47	5	2	44	1.39
48149190--48149267	37	2.2	35	86	6	104	44	3	5	46	1.43
48161765--48161813	24	2.0	25	84	11	66	2	22	6	69	1.21
48161994--48162034	10	3.8	11	81	12	50	7	7	2	82	0.91
48165835--48166002	41	4.1	41	78	3	151	17	18	26	37	1.93
48165817--48166026	82	2.6	82	81	6	230	18	19	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48165814--48166027	41	5.2	41	76	5	150	18	19	25	36	1.94
48171009--48171053	6	7.2	6	85	9	63	40	0	44	15	1.47
48171189--48171627	30	15.1	29	86	7	590	50	0	10	38	1.40
48171219--48171627	147	2.8	143	90	5	628	50	0	10	38	1.41
48171189--48171627	58	7.5	59	87	6	605	50	0	10	38	1.40
48172037--48172089	21	2.5	21	93	0	88	30	37	9	22	1.86
48176029--48176123	41	2.3	42	78	8	106	34	5	3	56	1.37
48177255--48177314	20	3.0	20	82	4	68	56	11	16	15	1.67
48177277--48177325	20	2.5	20	76	6	55	61	8	14	16	1.56
48177401--48177441	20	2.0	21	90	4	66	58	19	12	9	1.61
48177678--48177730	19	2.7	21	75	16	60	52	3	11	32	1.55
48178531--48178571	21	1.9	22	90	5	66	36	0	4	58	1.20
48183115--48183189	31	2.4	31	91	4	116	17	13	6	62	1.51
48189181--48189230	24	2.1	24	92	0	82	42	4	20	34	1.70
48189388--48189420	17	1.9	17	100	0	66	39	12	12	36	1.80
48195807--48195849	22	2.0	22	85	0	59	32	23	16	27	1.96
48204943--48205286	189	1.8	189	91	1	564	29	14	15	40	1.87
48206409--48206609	97	2.1	97	91	1	323	32	18	13	35	1.90
48206974--48207017	21	2.0	22	82	4	54	34	4	6	54	1.47
48207614--48207714	42	2.4	42	77	0	121	24	15	18	40	1.90
48207682--48207843	43	3.8	42	76	8	137	20	20	21	37	1.95
48217631--48217675	22	2.0	22	100	0	90	22	20	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48219137--48219162	5	5.2	5	100	0	52	0	19	0	80	0.71
48229503--48229536	10	3.3	10	88	8	50	79	5	14	0	0.91
48229554--48229584	15	2.1	15	100	0	62	74	6	0	19	1.03
48230723--48230804	29	2.8	29	84	0	92	21	28	31	18	1.97
48232757--48232786	3	10.0	3	92	0	51	66	3	0	30	1.07
48232749--48232812	15	4.3	15	76	11	53	65	6	0	28	1.16
48234333--48234438	44	2.4	44	90	0	167	29	32	16	21	1.96
48234504--48234771	129	2.1	130	87	2	378	25	25	17	32	1.97
48234563--48234950	128	3.0	129	83	4	421	25	24	19	30	1.98
48234722--48234977	128	2.0	128	92	0	422	24	23	19	31	1.98
48236188--48236221	14	2.4	14	90	0	50	11	20	0	67	1.21
48237047--48237333	142	2.0	144	93	4	488	10	13	5	69	1.35
48239351--48239388	20	1.9	20	94	0	67	15	23	5	55	1.61
48241767--48241813	15	3.2	15	79	11	53	63	6	0	29	1.19
48244393--48244422	9	3.2	9	90	9	51	10	3	0	86	0.67
48261939--48261975	20	2.0	20	84	10	51	5	18	8	67	1.36
48264752--48264886	40	3.4	39	78	7	148	25	19	24	30	1.98
48268001--48268031	11	2.8	11	95	0	53	61	16	0	22	1.34
48269301--48269332	15	2.1	15	94	0	55	15	6	9	68	1.36
48270883--48270974	37	2.4	37	80	8	89	40	3	5	51	1.41
48276330--48276365	3	12.0	3	93	0	63	0	63	0	36	0.94
48276384--48276441	3	19.7	3	87	3	82	0	32	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48281412--48283171	878	2.0	878	99	0	3502	37	21	13	28	1.91
48291600--48291645	23	2.0	23	100	0	92	56	8	4	30	1.49
48298983--48299026	22	2.0	23	82	13	56	65	4	15	13	1.41
48300038--48300162	62	2.1	59	86	4	169	30	13	2	53	1.53
48301020--48301211	106	1.8	106	86	2	278	29	14	18	37	1.91
48310176--48310213	20	1.9	20	84	10	51	76	0	10	13	1.02
48311652--48311685	17	1.9	18	88	5	52	35	17	0	47	1.48
48321096--48321231	67	2.0	71	91	7	226	34	14	5	44	1.70
48323918--48324226	152	2.0	153	94	1	530	34	16	17	31	1.92
48325080--48325198	60	2.0	60	88	0	175	53	11	0	33	1.43
48325381--48325411	11	2.8	11	95	0	53	0	32	0	67	0.91
48325561--48325608	24	2.0	25	83	4	62	62	6	0	31	1.20
48326199--48326305	24	4.8	21	82	13	106	15	12	54	17	1.71
48326199--48326293	45	2.1	45	92	0	154	15	12	54	16	1.71
48326211--48326305	45	2.1	45	90	0	145	14	13	53	17	1.73
48326211--48326314	24	4.5	24	90	7	151	14	15	52	17	1.74
48326199--48326314	45	2.5	43	86	6	115	15	13	53	17	1.73
48331236--48331269	16	2.1	16	89	10	52	32	0	0	67	0.91
48332625--48332657	5	6.6	5	100	0	66	39	0	0	60	0.97
48332732--48332780	22	2.2	22	78	7	55	55	2	2	40	1.23
48333244--48333288	23	1.9	24	86	13	67	55	2	22	20	1.54
48338666--48338744	41	2.0	40	87	7	115	37	2	2	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48338733--48338784	23	2.3	22	81	15	61	42	3	0	53	1.19
48347967--48348148	50	3.6	49	83	3	177	21	30	21	25	1.98
48348014--48348148	50	2.7	50	90	0	207	19	32	22	25	1.97
48349575--48349695	9	13.6	9	72	5	57	33	0	14	51	1.43
48349575--48349738	18	9.3	18	67	9	77	34	0	15	50	1.49
48349548--48349740	45	4.4	44	85	5	273	34	0	15	49	1.48
48349548--48349740	89	2.2	88	92	0	314	34	0	15	49	1.48
48349628--48349738	9	12.6	9	71	9	77	35	0	16	47	1.53
48350393--48350425	13	2.4	14	85	10	50	48	15	18	18	1.81
48353024--48353241	71	3.1	72	76	4	235	45	13	5	35	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189