genome.fa.s20.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  143  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43562716--43562832	43	2.7	43	81	4	137	21	29	12	36	1.90
43570856--43570905	21	2.4	21	82	0	64	34	18	22	26	1.96
43579088--43579117	13	2.3	13	94	0	51	10	23	0	66	1.21
43582736--43582897	48	3.4	48	83	0	198	27	20	27	24	1.99
43589713--43589830	48	2.5	48	90	1	184	25	23	27	22	2.00
43598082--43598124	18	2.4	18	84	7	61	62	9	4	23	1.44
43602021--43602074	20	2.7	20	80	11	65	48	20	18	12	1.81
43607689--43608090	201	2.0	201	96	0	741	33	16	14	34	1.90
43609726--43609800	37	2.0	37	100	0	150	30	13	16	40	1.86
43610523--43610563	17	2.3	18	80	12	50	68	4	2	24	1.22
43617109--43617141	17	1.9	17	88	11	50	18	9	6	66	1.40
43618492--43618605	61	1.9	58	89	5	174	42	1	5	50	1.35
43618498--43618627	58	2.2	61	82	9	153	42	3	6	48	1.43
43621743--43623040	259	5.0	259	95	0	2290	31	15	18	34	1.92
43623305--43623511	5	41.2	5	99	0	405	39	0	0	60	0.97
43626113--43626255	41	3.4	42	78	7	148	36	25	15	22	1.93
43626283--43626367	41	2.1	41	88	0	125	24	24	17	32	1.97
43629372--43629396	3	8.3	3	100	0	50	68	0	0	32	0.90
43629398--43629474	16	4.8	16	76	12	52	70	3	23	2	1.17
43630153--43630180	2	14.0	2	100	0	56	0	0	50	50	1.00
43647725--43647775	13	3.9	13	76	0	57	33	7	23	35	1.84
43655070--43655191	46	2.6	46	81	1	145	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43657888--43658536	47	13.6	47	91	2	1019	29	29	8	32	1.87
43657888--43658536	96	6.8	96	94	1	1090	29	29	8	32	1.87
43657888--43658536	143	4.5	141	92	3	1019	29	29	8	32	1.87
43661660--43662026	103	3.6	103	90	2	542	17	20	29	31	1.96
43672347--43672487	75	1.9	75	89	0	219	37	21	2	37	1.69
43682728--43682776	25	2.0	25	100	0	98	22	12	12	53	1.71
43683788--43683831	18	2.4	18	80	0	52	36	6	29	27	1.83
43685129--43685178	20	2.5	20	78	12	57	10	24	8	58	1.57
43685354--43685539	50	3.8	49	76	7	153	23	26	20	28	1.99
43686504--43686726	47	4.7	47	87	2	290	39	14	18	27	1.89
43686612--43686832	113	1.9	114	92	2	374	38	14	19	27	1.90
43686550--43686885	159	2.1	161	92	1	550	38	13	19	27	1.90
43686712--43686988	46	6.0	46	94	0	475	37	14	21	26	1.92
43686504--43686931	205	2.1	208	88	3	648	38	14	19	27	1.91
43686491--43686989	23	21.6	23	72	8	354	38	14	19	27	1.91
43687808--43687931	43	2.9	43	78	9	137	29	28	20	21	1.98
43694677--43695180	23	21.8	23	72	9	364	37	14	19	28	1.91
43694695--43694917	47	4.7	47	89	2	308	38	14	19	28	1.91
43694796--43695030	113	2.1	114	91	3	393	37	14	20	27	1.91
43694756--43695069	159	2.0	161	94	1	560	38	13	20	27	1.90
43694881--43695179	46	6.6	46	91	1	460	37	13	20	28	1.91
43694695--43695122	205	2.1	208	89	3	666	38	13	20	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43695997--43696122	43	2.9	43	77	16	152	30	28	19	21	1.98
43701205--43701346	25	5.7	25	76	5	144	26	20	21	30	1.98
43708920--43708962	18	2.4	18	88	0	68	27	18	16	37	1.92
43712099--43712139	18	2.2	19	91	4	66	34	12	0	53	1.38
43717274--43717324	24	2.1	24	85	3	66	29	0	1	68	1.00
43723794--43724041	94	2.6	94	83	0	298	31	17	26	24	1.97
43735120--43735158	21	1.9	21	89	5	62	61	5	2	30	1.31
43740438--43740481	23	1.9	23	95	0	79	38	11	4	45	1.61
43741508--43741581	39	1.9	38	86	8	105	33	29	14	21	1.94
43746240--43746339	40	2.5	40	86	0	137	43	21	24	12	1.86
43746240--43746349	20	5.5	20	83	0	112	44	20	24	10	1.83
43747311--43747445	69	1.9	70	92	1	227	33	6	5	54	1.51
43753023--43753054	17	1.9	17	93	6	57	56	0	0	43	0.99
43756756--43756935	57	3.1	58	89	6	269	28	20	6	44	1.77
43758866--43759023	40	3.9	39	82	6	158	27	24	16	31	1.96
43758874--43759024	80	1.9	80	87	0	221	28	24	15	31	1.96
43758877--43759056	40	4.5	39	77	10	150	29	24	14	31	1.94
43764772--43764921	74	2.0	74	89	0	228	29	24	14	32	1.94
43765296--43765334	19	2.2	18	86	9	53	79	7	5	7	1.05
43772624--43772692	27	2.5	28	79	11	72	2	26	2	68	1.18
43776051--43776086	18	2.0	18	88	0	54	33	5	5	55	1.46
43783698--43783729	13	2.4	14	94	5	57	46	9	0	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43786682--43786724	22	2.0	22	85	0	59	55	2	11	30	1.48
43788342--43788399	25	2.3	25	87	3	80	58	8	3	29	1.44
43794134--43794352	40	5.7	39	83	10	263	25	28	21	24	1.99
43794101--43794352	40	6.5	37	80	12	226	25	27	21	25	1.99
43794134--43794352	113	1.9	118	83	8	290	25	28	21	24	1.99
43802095--43802314	40	5.7	40	84	8	260	25	28	21	24	1.99
43809174--43809226	13	4.1	13	82	0	70	30	7	26	35	1.84
43816801--43816827	2	13.5	2	100	0	54	0	48	0	51	1.00
43819989--43820316	162	2.0	166	81	7	391	46	9	12	32	1.73
43819998--43820481	81	5.8	83	76	11	334	44	9	13	32	1.75
43820166--43820483	87	3.8	84	79	8	299	43	9	14	32	1.77
43820595--43820642	23	2.1	22	88	11	71	70	0	0	29	0.87
43821242--43821267	11	2.4	11	100	0	52	38	7	0	53	1.30
43821521--43821570	20	2.5	20	93	0	82	56	8	4	32	1.47
43826471--43826537	21	3.2	21	68	16	57	41	16	25	16	1.88
43826622--43826669	24	2.0	24	87	0	69	25	27	4	43	1.72
43831251--43831398	57	2.5	59	84	9	185	29	21	25	22	1.99
43831520--43831651	67	2.0	67	95	0	237	18	18	34	28	1.95
43833228--43833325	49	2.0	51	88	8	148	25	12	28	33	1.92
43846251--43846275	13	1.9	13	100	0	50	32	4	24	40	1.73
43848418--43848447	13	2.3	13	94	0	51	10	0	23	66	1.21
43850560--43850632	21	3.5	21	77	7	85	39	19	26	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43850545--43850640	21	4.6	21	76	0	75	39	17	23	18	1.92
43851801--43851904	52	2.0	52	100	0	208	44	17	5	32	1.72
43852185--43852230	24	2.0	23	82	4	56	60	13	0	26	1.32
43857999--43858037	16	2.4	17	87	8	55	66	0	5	28	1.12
43858011--43858059	25	2.1	23	85	14	66	65	0	4	30	1.11
43858075--43858133	29	2.1	27	81	12	66	55	1	6	35	1.36
43858197--43858272	30	2.6	28	80	10	73	40	6	1	51	1.36
43858656--43858700	18	2.4	20	89	10	69	40	2	0	57	1.11
43858658--43858700	10	4.7	9	81	16	52	39	2	0	58	1.11
43858650--43858703	15	3.2	16	78	19	56	46	1	0	51	1.11
43863177--43863252	23	3.3	23	92	0	134	32	26	19	21	1.97
43863339--43863367	8	3.6	8	100	0	58	34	27	13	24	1.93
43870027--43870102	23	3.3	23	96	0	143	31	26	21	21	1.98
43870188--43870216	8	3.6	8	100	0	58	34	27	13	24	1.93
43870321--43870359	18	2.2	17	86	13	53	46	20	0	33	1.51
43876885--43876960	23	3.3	23	92	0	134	32	26	19	21	1.97
43877047--43877075	8	3.6	8	100	0	58	34	27	13	24	1.93
43877180--43877218	18	2.2	17	86	13	53	46	20	0	33	1.51
43884143--43884384	50	4.7	50	85	5	288	26	23	28	21	1.99
43884143--43884392	100	2.4	103	86	5	335	26	22	28	22	1.99
43886062--43886105	20	2.2	20	87	0	61	45	18	27	9	1.79
43886178--43886579	198	2.0	198	99	0	795	35	19	8	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43892513--43892551	14	2.8	14	80	0	51	35	10	20	33	1.86
43893124--43893159	18	1.9	18	88	5	54	58	2	0	38	1.13
43895050--43895090	21	2.0	21	85	0	55	31	0	9	58	1.31
43897685--43897754	25	2.8	24	80	8	79	21	21	22	34	1.97
43897781--43898160	188	2.0	188	92	0	625	33	10	24	32	1.89
43898289--43898318	15	2.0	15	100	0	60	33	20	26	20	1.97
43901918--43901958	21	2.0	21	85	9	57	39	19	0	41	1.52
43903404--43903522	23	5.2	23	78	0	130	32	26	16	24	1.96
43903411--43903522	46	2.4	46	87	0	152	33	25	16	24	1.96
43903751--43903789	18	2.2	17	86	13	53	46	20	0	33	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189