genome.fa.s20.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  182  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54100081--54100138	19	2.9	19	71	16	55	34	0	0	65	0.93
54110409--54110443	18	1.9	18	88	0	52	28	2	5	62	1.32
54120649--54120683	17	2.0	18	88	5	54	57	5	0	37	1.23
54127943--54127999	19	2.9	20	80	12	57	66	5	0	28	1.13
54127943--54127987	21	2.2	19	84	11	54	66	4	0	28	1.11
54132118--54132192	26	2.8	27	70	11	64	34	2	2	60	1.25
54133626--54133659	17	1.9	17	88	5	50	44	5	5	44	1.52
54133721--54133753	11	3.1	11	86	4	50	69	18	0	12	1.18
54134373--54134419	24	2.0	23	83	8	58	19	2	34	44	1.62
54146114--54146162	21	2.3	22	82	13	66	59	2	0	38	1.09
54150796--54150840	18	2.6	17	86	6	56	24	0	0	75	0.80
54152561--54152706	43	3.4	43	75	5	107	21	22	20	34	1.96
54161164--54161190	4	6.8	4	100	0	54	77	0	0	22	0.76
54162546--54163064	132	3.9	133	84	5	563	32	15	15	36	1.90
54162546--54163212	264	2.6	253	81	6	744	32	15	15	36	1.89
54162948--54163180	116	2.0	116	85	1	315	32	15	15	36	1.89
54169627--54169680	22	2.6	21	82	8	65	25	27	20	25	1.99
54171163--54171214	26	2.0	26	92	0	86	50	17	0	32	1.47
54172341--54172581	46	5.2	46	91	0	392	39	17	15	27	1.89
54172729--54172766	18	2.1	18	100	0	76	44	15	0	39	1.47
54173274--54173407	41	3.3	40	79	10	112	32	29	14	23	1.94
54176648--54176688	15	2.9	15	82	13	52	12	2	4	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54177531--54177589	24	2.4	24	80	11	66	42	10	1	45	1.48
54177543--54177592	26	1.9	26	87	0	73	42	12	2	44	1.53
54177655--54177722	22	2.9	23	78	10	66	35	5	1	57	1.32
54182771--54182831	20	2.9	19	83	16	61	80	0	16	3	0.84
54182771--54182833	25	2.4	26	84	10	76	80	0	15	3	0.83
54183126--54183307	97	1.9	97	92	0	310	28	16	7	47	1.74
54184111--54184201	44	2.1	44	82	0	110	27	18	25	28	1.98
54184777--54184929	45	3.4	46	75	6	127	29	20	20	29	1.98
54185779--54185822	19	2.3	19	84	4	52	9	2	2	86	0.75
54185780--54185831	15	3.5	13	78	21	50	9	1	3	84	0.82
54186556--54186598	3	14.0	3	81	13	52	32	4	2	60	1.30
54186669--54186727	24	2.4	24	80	11	66	42	10	1	45	1.48
54186668--54186730	26	2.4	26	79	7	74	39	11	1	47	1.49
54186798--54186861	22	2.7	23	83	11	67	34	6	1	57	1.33
54189904--54190418	131	4.0	131	85	5	735	25	24	20	29	1.99
54189916--54190387	253	1.9	253	92	0	800	24	24	20	30	1.98
54202607--54202637	3	10.7	3	93	6	55	70	0	0	29	0.87
54203325--54203357	15	2.2	15	100	0	66	69	6	6	18	1.30
54205789--54205858	29	2.3	29	80	4	77	24	15	12	47	1.81
54212946--54213032	45	1.9	45	92	0	147	34	24	16	25	1.95
54213041--54213172	51	2.6	51	82	2	149	33	27	15	23	1.95
54214763--54214907	48	3.0	48	84	3	166	23	27	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54218791--54218822	13	2.5	13	94	0	55	31	0	12	56	1.37
54218917--54219158	50	4.7	50	84	4	279	26	24	28	19	1.99
54218917--54219166	100	2.4	103	88	6	373	26	24	28	20	1.99
54222605--54222719	57	1.9	59	86	10	162	29	20	24	25	1.99
54222634--54222746	57	2.0	57	82	3	138	31	20	23	24	1.98
54222874--54223004	67	2.0	67	96	0	244	20	17	33	28	1.95
54231547--54231615	35	2.0	35	91	2	113	23	8	31	36	1.85
54243870--54243920	25	2.0	25	84	3	66	43	0	11	45	1.40
54247934--54247972	20	1.9	21	89	5	62	41	2	5	51	1.38
54253282--54253310	10	2.9	10	100	0	58	51	6	0	41	1.28
54254897--54255016	40	2.8	44	81	12	160	21	20	24	34	1.97
54255017--54256072	134	7.9	134	94	0	1864	29	23	20	26	1.99
54256041--54256390	86	4.1	86	90	0	511	27	23	22	26	2.00
54256203--54256336	42	3.1	42	63	19	105	24	23	25	26	2.00
54260498--54260541	19	2.3	20	84	7	56	40	11	20	27	1.86
54262881--54262909	10	2.9	10	100	0	58	51	6	0	41	1.28
54266106--54266149	20	2.3	18	81	11	52	59	2	0	38	1.10
54266973--54266998	2	13.0	2	100	0	52	50	0	0	50	1.00
54289657--54289694	13	2.8	14	81	18	53	65	2	21	10	1.35
54293609--54293647	17	2.3	18	82	13	55	51	7	0	41	1.31
54300022--54300115	29	3.2	29	81	6	109	44	17	8	29	1.78
54300468--54300529	23	2.7	22	80	9	72	38	38	6	16	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54301754--54301823	3	23.7	3	78	16	67	30	4	1	64	1.21
54313506--54313541	15	2.4	15	90	0	54	86	2	8	2	0.77
54314393--54314777	69	5.5	70	90	3	555	27	14	24	33	1.94
54314393--54314777	140	2.8	140	92	2	605	27	14	24	33	1.94
54316034--54316102	19	3.5	19	80	13	68	40	2	4	52	1.36
54318403--54318437	15	2.4	15	90	4	54	48	0	8	42	1.33
54322340--54322415	13	5.8	12	73	17	62	19	5	0	75	1.00
54322349--54322419	20	3.5	21	84	7	85	22	4	0	73	1.01
54325509--54325567	27	2.2	27	90	0	91	23	18	27	30	1.98
54329617--54329702	30	2.7	33	74	22	85	38	10	1	50	1.45
54335547--54336391	44	19.5	44	69	11	362	31	19	20	28	1.97
54335548--54336355	173	4.7	172	74	11	464	31	19	21	27	1.98
54335523--54336008	217	2.2	218	88	0	733	30	19	23	26	1.98
54335761--54336383	302	2.1	302	93	0	1057	31	20	20	27	1.97
54335938--54336227	129	2.3	128	79	6	300	31	20	20	28	1.97
54337069--54337100	3	10.7	3	100	0	64	31	0	0	68	0.90
54356680--54356910	48	4.8	48	95	0	399	13	9	48	29	1.73
54356760--54356897	27	5.6	27	62	25	79	15	9	48	26	1.75
54356872--54356951	33	2.4	33	89	0	124	13	5	47	33	1.65
54356871--54356973	33	3.2	31	84	4	109	12	6	47	33	1.68
54359098--54359148	25	2.0	25	88	0	75	33	19	5	41	1.76
54359532--54359621	23	4.0	23	82	7	114	36	23	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54359710--54359784	16	5.2	16	68	23	51	37	24	0	38	1.55
54360268--54360306	3	13.0	3	100	0	78	66	0	0	33	0.92
54363548--54363667	34	3.5	34	94	0	204	38	8	14	39	1.76
54375051--54375114	4	15.5	4	80	18	53	75	0	23	1	0.90
54375079--54375164	20	4.9	19	68	22	64	67	0	30	2	1.03
54375057--54375131	30	2.5	31	89	6	118	70	0	26	2	1.00
54375456--54375489	16	2.2	16	89	5	52	73	2	5	17	1.16
54375491--54376067	158	3.6	158	89	4	860	54	7	9	28	1.60
54378173--54378271	40	2.4	40	94	3	171	41	12	5	41	1.64
54381655--54381700	20	2.3	20	85	7	58	2	28	0	69	1.00
54383120--54383151	13	2.5	13	94	0	55	31	0	0	68	0.90
54385785--54385868	28	3.0	27	80	3	96	26	0	22	51	1.49
54385831--54385869	21	1.9	20	85	15	53	28	0	17	53	1.44
54386196--54386292	49	2.0	49	87	4	142	25	23	6	44	1.77
54387567--54387652	43	2.0	43	88	0	127	22	23	3	51	1.63
54388843--54388881	3	13.0	3	89	10	62	30	2	0	66	1.05
54388826--54388877	9	6.1	8	82	13	52	25	3	1	69	1.16
54388812--54388858	25	1.9	24	87	12	69	17	10	2	70	1.26
54402313--54402416	33	3.1	33	75	19	90	46	2	0	50	1.16
54403881--54403936	29	1.9	29	85	7	78	25	16	19	39	1.91
54405763--54405789	3	9.0	3	100	0	54	66	0	33	0	0.92
54414952--54415301	103	3.4	103	86	2	488	18	20	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54415029--54415110	27	2.8	28	87	10	103	14	23	30	31	1.94
54422257--54422460	103	2.0	103	93	1	347	19	18	28	33	1.95
54422396--54422534	42	3.5	41	71	16	130	21	18	27	32	1.97
54422361--54422536	76	2.3	76	92	1	282	19	20	27	32	1.97
54427577--54427914	103	3.3	103	90	1	516	32	28	19	18	1.96
54427768--54427849	27	2.8	27	87	10	101	31	29	23	15	1.95
54429189--54429219	13	2.4	13	94	0	53	16	3	0	80	0.83
54430764--54430815	26	2.0	26	96	0	95	13	23	34	28	1.92
54430583--54430951	104	3.6	104	90	3	575	19	19	30	30	1.96
54437697--54438006	104	3.0	104	93	2	507	19	19	29	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189