genome.fa.s20.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  152  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45839204--45839353	16	10.0	16	67	22	76	47	20	1	30	1.59
45839155--45839242	25	3.8	25	75	15	91	48	20	2	28	1.61
45839220--45839283	25	2.6	24	73	9	58	46	20	1	31	1.60
45839724--45839777	27	2.0	27	100	0	108	33	14	18	33	1.92
45844786--45844950	66	2.5	65	86	4	215	40	18	26	13	1.89
45844927--45844997	21	3.4	21	90	0	88	36	15	42	5	1.71
45845370--45845504	43	3.1	44	85	7	179	25	17	31	25	1.97
45845388--45845529	43	3.3	41	79	5	140	23	19	29	27	1.98
45848239--45848279	13	3.1	13	86	6	55	43	0	0	56	0.99
45849203--45849244	18	2.3	18	83	0	57	23	45	0	30	1.53
45849215--45849256	18	2.3	18	84	8	50	33	28	0	38	1.58
45852477--45852509	16	2.1	16	100	0	66	48	21	0	30	1.50
45852633--45852670	19	2.0	19	100	0	76	42	15	5	36	1.70
45857075--45857110	16	2.2	16	95	0	63	27	0	33	38	1.57
45857349--45857382	18	1.9	18	88	5	52	52	0	0	47	1.00
45857262--45857557	163	1.8	163	96	0	556	44	3	3	48	1.36
45857491--45857532	15	2.7	16	82	14	52	52	2	0	45	1.13
45857500--45857541	15	2.9	15	82	10	52	52	0	0	47	1.00
45857496--45857663	83	2.0	83	100	0	336	47	5	1	46	1.33
45857583--45857624	15	2.9	15	82	10	52	52	0	0	47	1.00
45857496--45857694	83	2.4	83	92	3	285	48	5	2	44	1.37
45857790--45857837	26	1.9	25	84	16	64	52	2	0	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45857745--45857954	92	2.3	92	82	7	232	49	3	2	44	1.33
45857780--45857973	92	2.1	92	86	5	268	46	4	3	45	1.39
45864832--45864883	18	3.0	16	78	15	50	30	5	1	61	1.30
45865034--45865075	18	2.3	19	84	8	52	40	0	2	57	1.12
45865046--45865083	19	2.0	19	85	10	51	36	0	7	55	1.29
45869587--45869614	12	2.3	12	100	0	56	71	0	14	14	1.15
45869606--45869638	17	1.9	18	88	11	52	78	6	3	12	1.04
45870621--45870667	13	3.5	14	85	5	62	70	0	12	17	1.17
45870621--45870667	20	2.3	20	89	7	69	70	0	12	17	1.17
45870621--45870667	7	7.0	7	85	9	62	70	0	12	17	1.17
45871910--45873282	44	31.7	43	68	12	486	29	19	22	28	1.98
45871893--45872227	175	1.9	175	91	0	553	30	18	21	29	1.97
45872087--45873282	129	9.2	129	76	9	835	29	19	21	29	1.98
45872474--45873985	218	7.0	218	92	3	2452	28	20	22	28	1.98
45871893--45873312	87	16.3	86	68	11	438	30	19	21	28	1.98
45872738--45873028	131	2.2	131	79	8	290	29	18	22	29	1.97
45873374--45873969	87	6.9	87	72	10	371	28	20	23	28	1.99
45872474--45873985	636	2.3	642	92	2	2464	28	20	22	28	1.98
45873592--45873834	131	1.8	133	80	5	296	27	20	23	28	1.99
45873979--45874251	46	5.9	46	87	3	343	26	15	26	31	1.95
45873979--45874232	138	1.8	138	90	1	411	26	15	25	32	1.96
45876016--45876072	3	18.0	3	81	13	53	29	5	1	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45875997--45876049	12	3.7	15	73	21	51	33	1	3	60	1.26
45876160--45876242	33	2.5	32	80	5	85	39	6	2	51	1.39
45876217--45876267	20	2.4	22	80	6	61	41	0	3	54	1.19
45878556--45878597	22	1.9	22	90	9	68	54	0	2	42	1.13
45885824--45885868	24	2.0	23	83	16	58	24	8	4	62	1.43
45892303--45892335	6	5.7	6	89	7	50	87	0	9	3	0.63
45892301--45892335	17	2.1	17	94	0	61	88	0	8	2	0.61
45893616--45893648	17	1.9	17	93	0	57	30	21	3	45	1.67
45903075--45903103	4	7.2	4	100	0	58	24	0	0	75	0.80
45904295--45904345	21	2.6	20	72	9	52	49	1	0	49	1.12
45913787--45913815	12	2.3	13	94	5	51	13	17	0	68	1.20
45918618--45918650	3	11.3	3	93	6	59	69	0	30	0	0.88
45918816--45918842	14	1.9	14	100	0	54	0	33	0	66	0.92
45919278--45919338	29	2.1	31	85	14	85	45	4	14	34	1.67
45919397--45919438	21	2.0	21	100	0	84	28	28	19	23	1.98
45919481--45919540	31	2.0	31	83	9	79	21	8	20	50	1.74
45922273--45922313	4	10.2	4	100	0	82	48	24	0	26	1.51
45926121--45926146	13	2.0	13	100	0	52	61	23	0	15	1.33
45931211--45931267	17	3.3	17	75	4	51	43	1	8	45	1.45
45933846--45933870	12	2.1	12	100	0	50	8	16	0	76	1.02
45934317--45934349	15	2.1	17	88	11	52	81	0	3	15	0.80
45935313--45935354	21	2.0	20	86	13	59	28	23	9	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45940157--45940202	21	2.2	21	92	0	74	23	41	17	17	1.90
45941064--45941111	22	2.1	22	81	11	53	39	14	12	33	1.84
45943187--45943227	21	2.0	20	86	13	57	63	4	0	31	1.15
45944868--45944908	21	2.0	21	95	0	73	24	36	17	21	1.94
45946904--45946928	6	4.2	6	100	0	50	0	16	0	84	0.63
45947710--45947819	42	2.6	42	88	4	159	28	27	33	10	1.90
45960324--45960443	46	2.6	47	82	6	136	35	17	20	26	1.94
45960345--45960446	47	2.2	46	85	5	134	35	16	22	25	1.95
45970370--45970477	45	2.6	43	79	10	125	34	5	28	31	1.80
45970603--45970644	15	2.7	16	82	14	52	52	2	0	45	1.13
45970612--45970653	15	2.9	15	82	10	52	52	0	0	47	1.00
45974399--45974439	18	2.3	18	84	12	50	39	2	21	36	1.67
45975738--45975836	39	2.6	37	80	3	108	49	7	6	37	1.55
45978881--45978953	3	24.3	3	97	0	137	1	31	0	67	1.00
45984402--45984426	11	2.3	11	100	0	50	60	16	0	24	1.36
45984484--45984569	36	2.4	36	82	0	100	24	17	32	25	1.97
45986264--45986314	19	2.7	19	81	0	66	52	5	1	39	1.37
45986264--45986325	19	3.3	19	80	6	65	50	6	1	41	1.38
45989145--45989518	125	3.0	123	87	5	547	29	14	22	33	1.94
45992525--45992723	64	3.0	65	86	7	258	48	13	4	34	1.60
45992648--45992704	25	2.3	25	93	0	96	47	14	0	38	1.44
45992619--45992749	70	1.9	70	90	0	208	48	12	0	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45992672--45992759	45	2.0	45	86	4	124	48	11	0	39	1.39
45993178--45993217	18	2.2	18	95	0	71	40	7	30	22	1.81
45994056--45994094	21	1.9	20	84	5	51	51	7	2	38	1.44
45995037--45995079	12	3.8	12	80	20	56	41	0	30	27	1.56
45996030--45996149	25	4.8	24	72	17	93	26	22	17	33	1.96
45996030--45996153	50	2.5	50	85	1	151	26	22	18	32	1.97
45996296--45996357	31	2.1	30	82	17	76	48	8	14	29	1.72
46001526--46001557	3	10.3	3	93	6	55	68	0	0	31	0.90
46001608--46001637	13	2.4	12	94	5	51	46	6	0	46	1.29
46001637--46001671	18	1.9	18	94	0	61	60	0	11	28	1.32
46001977--46002017	16	2.6	15	85	11	55	58	0	2	39	1.11
46007108--46007153	18	2.6	18	85	0	56	2	32	34	30	1.70
46009339--46009395	27	2.3	24	76	23	64	31	28	7	33	1.84
46010028--46010097	31	2.3	30	90	7	106	10	35	35	18	1.84
46011627--46011667	20	2.0	20	100	0	82	29	9	9	51	1.67
46013359--46013443	44	1.9	44	88	4	127	23	16	11	48	1.79
46014888--46014934	22	2.1	22	81	14	53	57	0	0	42	0.98
46026542--46026753	40	5.3	39	81	5	246	26	28	21	23	1.99
46026542--46026753	80	2.7	80	90	0	327	26	28	21	23	1.99
46031263--46031313	22	2.3	22	77	12	59	56	1	27	13	1.48
46034125--46034197	38	1.9	37	86	8	103	31	21	1	45	1.61
46034185--46034228	23	1.9	22	82	17	54	38	22	0	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46034327--46034402	23	3.3	23	94	0	134	31	25	21	22	1.98
46034855--46034913	30	2.0	30	82	0	73	28	25	10	35	1.89
46036146--46036186	21	1.9	22	85	5	57	60	2	2	34	1.23
46036600--46036639	17	2.4	17	87	8	55	57	2	0	40	1.12
46037844--46038094	42	6.0	42	82	6	262	31	20	23	24	1.98
46037843--46038090	83	2.9	82	79	9	243	32	20	23	24	1.98
46038510--46038547	12	3.2	12	92	0	58	2	36	15	44	1.61
46044108--46044472	9	41.3	9	81	4	404	35	0	16	46	1.53
46044644--46044682	9	4.3	9	86	0	60	38	0	15	46	1.46
46044642--46044686	18	2.5	18	92	0	72	37	0	13	48	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189