genome.fa.s20.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  60  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16998494--16998551	25	2.3	24	85	5	71	48	0	5	46	1.24
17004264--17004311	26	1.9	25	84	16	64	45	0	2	52	1.12
17004130--17004336	92	2.3	89	85	5	263	46	3	3	45	1.39
17004382--17004835	66	7.5	62	66	25	242	42	2	5	49	1.40
17004476--17004527	15	3.6	15	80	12	56	44	0	1	53	1.11
17004352--17004879	120	4.4	120	94	3	910	42	2	5	49	1.38
17004596--17004647	15	3.6	15	80	12	56	44	0	1	53	1.11
17004352--17004884	236	2.2	239	93	4	909	42	2	5	49	1.37
17004841--17004882	15	2.7	16	82	14	52	45	0	2	52	1.13
17004832--17004873	15	2.9	15	82	10	52	47	0	0	52	1.00
17004816--17005131	157	2.0	157	94	1	555	47	4	3	43	1.42
17005255--17005285	16	1.9	16	100	0	62	38	41	0	19	1.51
17005311--17005354	16	2.8	16	96	0	79	40	0	31	27	1.56
17005333--17005423	45	2.0	44	85	2	119	32	5	27	34	1.80
17005677--17005859	28	6.3	28	66	15	86	54	2	0	42	1.18
17005577--17006179	122	5.0	120	95	2	1057	53	3	1	41	1.29
17006037--17006101	18	4.2	16	72	18	57	60	0	1	38	1.07
17006064--17006101	18	2.2	17	90	4	58	63	0	2	34	1.09
17006468--17006535	17	3.9	17	70	24	61	27	5	7	58	1.48
17010320--17010369	24	2.1	24	85	7	66	34	24	4	38	1.74
17012730--17012808	34	2.3	35	82	6	99	40	10	11	37	1.75
17012746--17012826	17	4.8	17	72	18	62	46	11	11	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17012784--17012827	17	2.5	18	85	7	63	50	9	11	29	1.69
17013334--17013376	20	2.2	20	87	8	61	0	16	0	83	0.64
17013527--17013571	16	2.6	17	86	6	56	6	28	37	26	1.82
17013641--17013707	6	11.5	6	74	16	61	0	17	1	80	0.79
17013648--17013711	22	3.1	19	81	18	67	0	18	0	81	0.70
17013656--17013723	22	3.1	21	87	6	82	1	22	0	76	0.87
17014273--17014346	29	2.5	30	73	10	71	39	9	24	27	1.86
17014440--17014472	16	2.1	16	94	0	57	15	0	6	78	0.93
17014807--17014836	15	1.9	16	93	6	53	83	0	16	0	0.65
17014923--17015689	76	9.8	77	85	5	827	34	19	17	28	1.95
17016575--17016628	19	2.9	19	81	13	67	0	11	3	85	0.73
17016575--17016661	23	3.9	22	79	10	79	1	11	5	81	0.91
17024108--17024152	17	2.8	17	86	6	58	44	11	11	33	1.75
17024119--17024162	17	2.5	17	85	3	61	45	9	15	29	1.77
17024667--17024710	15	2.9	14	83	12	52	0	22	0	77	0.77
17024863--17024907	16	2.6	17	86	6	56	6	26	37	28	1.82
17024984--17025023	12	3.3	12	89	0	62	0	20	0	80	0.72
17024983--17025058	12	6.9	10	76	15	53	2	26	0	71	1.00
17024983--17025052	22	3.1	21	78	17	70	2	25	0	71	1.00
17024983--17025043	24	2.7	23	84	5	70	1	24	0	73	0.92
17025609--17025784	30	5.9	29	69	13	90	38	7	23	30	1.83
17026798--17026833	18	2.0	18	94	0	63	38	11	8	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17028192--17028226	16	2.1	17	89	5	54	40	8	0	51	1.33
17039164--17039287	62	2.0	62	100	0	248	46	11	17	24	1.81
17045764--17045822	30	2.0	30	83	9	77	45	5	0	49	1.24
17049101--17049204	47	2.2	47	92	0	172	36	27	5	29	1.80
17050702--17050741	20	2.0	20	90	0	62	27	10	12	50	1.72
17050688--17050753	34	1.9	35	90	3	107	31	9	13	45	1.75
17050831--17050882	18	2.7	20	74	17	56	36	3	0	59	1.16
17062283--17062317	5	7.4	5	96	3	56	0	14	0	85	0.59
17063728--17063764	9	4.1	9	86	13	58	45	10	10	32	1.74
17064292--17064320	9	3.2	9	100	0	58	31	0	0	68	0.89
17068606--17068671	34	1.9	34	100	0	132	45	3	12	39	1.57
17070078--17070128	3	17.0	3	84	8	68	35	3	0	60	1.15
17070218--17070290	35	2.1	34	82	5	85	39	10	6	42	1.67
17070256--17070338	43	1.9	43	83	11	107	34	8	4	51	1.53
17070464--17070492	8	3.8	8	95	4	51	31	0	0	68	0.89
17075759--17075827	33	2.1	33	100	0	138	28	13	8	49	1.71
17075878--17075953	38	2.0	38	94	0	134	17	17	17	48	1.81
17077490--17077575	39	2.2	39	97	0	163	45	29	2	23	1.65
17077570--17077625	16	3.5	16	87	0	85	28	28	7	35	1.84
17077866--17077914	22	2.3	22	86	10	66	63	4	4	28	1.31
17077764--17078151	26	15.2	25	71	17	182	60	4	6	29	1.41
17077791--17078038	55	4.7	55	76	12	218	62	4	4	28	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17077764--17078038	102	2.7	100	81	9	293	61	4	5	28	1.38
17078088--17078159	29	2.4	29	76	15	76	65	1	6	26	1.26
17081133--17081176	11	3.8	12	88	5	56	63	2	0	34	1.07
17081133--17081176	23	1.9	23	85	0	61	63	2	0	34	1.07
17081159--17081196	16	2.3	17	86	4	51	57	2	0	39	1.12
17088312--17088427	19	5.8	21	68	15	57	58	3	2	35	1.29
17099940--17099984	24	1.9	23	86	4	63	53	0	0	46	1.00
17101982--17102029	17	2.7	19	81	12	57	31	2	2	64	1.16
17101990--17102029	18	2.2	20	78	17	50	32	2	0	65	1.06
17118037--17118378	124	2.8	122	90	3	528	28	15	23	33	1.95
17120931--17120966	12	3.1	12	92	4	56	47	0	0	52	1.00
17120931--17120972	12	3.8	11	79	20	52	54	0	0	45	0.99
17121043--17121078	11	3.2	11	88	4	54	47	0	33	19	1.50
17124770--17124899	24	5.3	24	72	16	97	51	9	8	30	1.63
17124762--17124897	50	2.8	46	89	7	184	51	9	8	30	1.63
17124815--17124915	24	4.2	24	78	10	109	48	5	8	36	1.59
17124917--17124976	3	20.0	3	89	0	93	66	1	0	31	1.01
17126084--17126122	14	2.6	14	88	8	51	7	17	30	43	1.77
17135255--17135294	20	2.0	20	90	0	62	60	5	0	35	1.19
17143499--17143537	9	4.3	9	83	9	53	17	2	0	79	0.84
17144600--17144695	46	2.1	46	90	3	149	44	11	11	32	1.76
17146609--17146662	24	2.3	23	80	3	63	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17146659--17146709	14	3.8	13	79	7	57	58	0	1	39	1.09
17149553--17149610	29	2.0	29	90	10	91	39	12	37	10	1.77
17167432--17167460	5	5.8	5	100	0	58	41	0	17	41	1.49
17167425--17167482	5	11.6	5	90	0	53	43	0	10	46	1.38
17167430--17167482	15	3.5	15	84	0	61	43	0	9	47	1.36
17168437--17168490	25	2.2	25	90	6	83	20	22	20	37	1.95
17173396--17173474	37	2.1	37	90	0	122	25	31	18	24	1.98
17173649--17174116	47	9.9	47	96	0	801	28	29	8	32	1.88
17173592--17174116	141	3.7	141	92	1	807	27	29	9	32	1.88
17177111--17177267	41	3.8	41	87	0	206	31	29	22	17	1.96
17177372--17177511	47	2.9	47	77	2	145	37	16	9	37	1.81
17177542--17177654	47	2.4	47	83	0	136	39	16	7	36	1.76
17177336--17177654	155	2.1	157	93	1	545	38	16	7	37	1.78
17179454--17179609	85	1.8	85	100	0	312	30	26	8	34	1.87
17180583--17182337	438	4.0	438	90	1	2631	26	23	17	33	1.96
17185504--17185541	19	2.1	19	85	9	53	42	0	0	57	0.98
17186621--17187142	259	2.0	259	100	0	1044	34	21	18	26	1.96
17192978--17193011	2	17.0	2	100	0	68	50	0	50	0	1.00
17207344--17207401	17	3.6	16	75	15	57	44	1	0	53	1.10
17214265--17214298	18	1.9	18	88	5	52	52	8	11	26	1.67
17224275--17224410	40	3.4	39	80	7	137	25	15	27	32	1.95
17225155--17225237	23	3.5	24	86	4	125	31	15	19	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17230808--17230838	16	1.9	16	93	0	53	64	0	3	32	1.09
17231170--17231220	15	3.5	15	71	15	52	25	3	11	58	1.50
17234574--17234696	25	5.0	25	80	3	117	23	24	20	31	1.98
17238254--17238350	50	1.9	50	87	0	140	42	17	7	32	1.77
17239129--17239178	25	1.9	27	84	8	68	24	18	6	52	1.67
17241754--17241796	18	2.5	18	88	7	63	30	0	4	65	1.13
17241990--17242040	23	2.2	24	86	6	70	50	0	3	45	1.20
17242119--17242160	21	2.0	21	100	0	84	19	4	38	38	1.73
17247896--17247943	12	4.3	12	75	17	50	60	0	2	37	1.09
17247895--17247934	21	1.9	21	94	0	71	62	0	2	35	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189