genome.fa.s20.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  119  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33448547--33448582	3	12.0	3	100	0	72	33	0	0	66	0.92
33448565--33450237	549	3.1	542	85	5	2209	36	12	15	36	1.84
33448726--33450237	529	2.8	528	85	5	1852	36	12	15	35	1.85
33450323--33450429	41	2.6	41	89	0	160	18	21	31	28	1.97
33451087--33451135	14	3.4	14	83	5	62	22	0	38	38	1.54
33451866--33451902	13	2.8	13	87	4	56	59	0	2	37	1.12
33452539--33452601	19	3.4	19	65	8	58	15	26	1	55	1.50
33452534--33452606	36	2.0	36	100	0	146	16	24	2	56	1.54
33455402--33455576	43	4.0	43	93	0	269	26	18	26	28	1.98
33456485--33458633	548	3.9	546	84	4	2692	37	11	15	35	1.84
33462386--33462570	101	1.8	102	88	5	286	24	17	28	30	1.97
33462386--33462568	51	3.6	50	79	6	172	24	17	27	30	1.97
33462574--33462666	46	2.1	43	82	9	107	26	17	23	32	1.96
33465496--33465590	47	2.0	46	84	9	122	1	25	18	54	1.50
33466444--33466539	30	3.2	30	85	2	138	41	3	22	32	1.70
33466831--33467146	75	4.2	75	85	3	406	35	21	17	26	1.95
33467419--33467470	19	2.7	21	77	14	58	11	25	13	50	1.75
33478689--33478742	27	2.0	28	92	3	92	9	16	44	29	1.79
33478834--33478867	7	5.0	7	89	7	52	14	2	0	82	0.79
33478865--33478953	4	24.5	4	76	17	88	1	21	0	77	0.83
33478859--33478947	18	4.9	18	77	16	87	2	20	0	77	0.87
33478853--33478903	24	2.1	24	89	7	77	5	13	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33478865--33478953	25	3.6	25	81	17	105	1	21	0	77	0.83
33478843--33478953	7	15.3	7	79	9	98	3	17	0	79	0.87
33478883--33478958	29	2.7	29	97	2	145	0	23	0	76	0.79
33479451--33479551	30	3.4	30	80	9	118	38	1	25	33	1.67
33479411--33479550	29	4.8	30	73	9	128	36	2	26	35	1.69
33481125--33482612	540	2.7	540	85	5	1929	36	12	15	35	1.85
33486303--33486806	47	10.6	47	92	2	785	28	29	8	33	1.86
33486303--33486806	96	5.3	94	93	1	785	28	29	8	33	1.86
33490249--33492690	556	4.4	538	78	10	2304	36	10	15	36	1.83
33500367--33500397	10	3.1	10	100	0	62	19	19	19	41	1.90
33510450--33510508	28	2.1	28	81	6	66	76	5	3	15	1.10
33510460--33510518	18	3.4	16	79	9	55	72	1	5	20	1.12
33510475--33510526	21	2.5	22	78	15	56	71	1	3	23	1.13
33513265--33513305	11	3.9	10	84	9	55	78	2	19	0	0.87
33513331--33513359	12	2.3	13	94	5	51	75	17	6	0	1.01
33513337--33513388	24	2.2	24	82	0	59	80	7	1	9	0.97
33513356--33513392	6	6.3	6	82	17	51	83	0	0	16	0.64
33542236--33542451	101	2.1	101	86	0	306	31	15	25	27	1.96
33544808--33545113	27	11.3	27	87	1	353	34	20	20	24	1.96
33545178--33545235	24	2.4	25	82	5	75	18	5	25	50	1.68
33545407--33545613	32	6.5	31	77	6	182	19	19	23	37	1.94
33545404--33545613	64	3.3	63	79	4	260	19	20	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33545643--33545696	22	2.5	22	75	0	54	20	20	12	46	1.83
33548215--33548485	27	10.1	27	83	2	305	34	18	20	25	1.96
33548506--33548579	23	3.1	24	84	3	96	20	4	25	50	1.66
33548507--33548582	24	3.2	23	85	5	98	19	3	26	50	1.65
33548757--33548910	32	4.8	32	76	6	132	18	19	24	37	1.94
33548757--33548910	64	2.4	64	84	2	202	18	19	24	37	1.94
33581237--33581325	45	1.9	47	82	8	112	22	20	16	40	1.91
33582934--33582977	20	2.2	20	95	0	79	31	2	20	45	1.64
33583693--33583722	14	2.1	14	93	0	51	46	13	0	40	1.43
33587857--33587939	28	3.0	29	73	19	86	68	1	6	24	1.19
33587927--33587951	8	3.1	8	100	0	50	64	0	0	36	0.94
33591602--33591631	14	2.1	14	93	0	51	46	13	0	40	1.43
33592469--33592502	17	2.0	17	94	0	59	17	32	35	14	1.91
33596945--33596986	21	2.0	21	81	9	50	52	2	11	33	1.51
33600755--33600828	24	3.0	25	84	5	98	43	5	29	21	1.75
33608485--33608552	24	2.8	24	90	2	100	41	5	30	22	1.77
33610972--33611019	23	2.1	23	84	0	60	27	14	14	43	1.84
33612914--33612980	29	2.4	28	87	2	89	46	14	5	32	1.69
33620134--33620217	41	2.0	41	100	0	168	25	23	15	35	1.94
33622515--33622548	10	3.5	10	84	8	52	11	8	32	47	1.71
33622517--33622557	19	2.2	19	95	0	73	12	7	34	46	1.69
33622517--33622564	19	2.5	19	89	0	60	12	6	29	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33625427--33625490	14	4.7	14	70	14	53	31	1	14	53	1.50
33625424--33625504	40	2.0	40	97	0	153	33	2	14	49	1.57
33626780--33626817	17	2.2	17	86	9	51	50	5	0	44	1.24
33634744--33635011	143	1.9	143	82	6	337	39	8	12	39	1.73
33635013--33637312	143	16.1	141	81	4	2315	36	10	15	37	1.81
33635444--33635711	132	2.0	134	83	4	337	38	8	13	38	1.77
33635036--33637312	429	5.3	429	83	4	2568	36	10	15	37	1.81
33637154--33637483	177	1.9	176	86	5	470	36	10	14	39	1.79
33638897--33641485	143	18.1	142	76	8	1721	36	9	15	38	1.80
33638925--33641477	285	8.9	281	74	10	1357	36	9	15	38	1.80
33640230--33640648	229	1.8	228	87	3	628	35	10	14	39	1.80
33641418--33641551	66	2.0	66	83	0	169	41	8	18	31	1.80
33641484--33645176	142	25.5	142	70	11	1382	37	9	14	38	1.78
33642066--33642226	84	1.9	84	83	2	207	33	11	17	37	1.85
33641923--33642347	227	1.9	227	89	1	672	36	10	16	36	1.83
33642237--33642688	224	2.0	221	86	3	629	40	8	13	36	1.76
33642505--33645176	142	18.5	142	72	10	1387	37	8	14	38	1.78
33642469--33645176	284	9.4	280	74	10	1647	37	9	14	38	1.78
33643465--33643627	86	1.9	86	84	5	222	33	10	17	38	1.84
33643540--33645176	426	3.8	424	79	6	1567	37	9	14	38	1.78
33644985--33645410	233	1.8	233	87	3	642	34	10	16	38	1.83
33645218--33646715	143	10.5	141	76	8	1203	36	9	15	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33645218--33646715	283	5.2	281	79	8	1354	36	9	15	38	1.79
33645226--33646703	575	2.6	569	80	7	1541	36	9	15	38	1.80
33646644--33646801	86	1.8	86	87	5	239	34	9	16	39	1.81
33646714--33648640	143	13.6	143	78	5	1736	36	9	15	37	1.80
33646714--33648637	426	4.5	427	81	5	1933	37	9	15	37	1.80
33646714--33648332	578	2.8	567	82	4	1610	37	9	15	37	1.80
33648559--33648724	86	1.9	86	88	2	253	36	10	17	35	1.84
33651493--33651601	50	2.2	50	83	6	132	25	29	25	19	1.98
33653974--33656000	143	14.4	141	76	7	1674	36	9	15	38	1.81
33654005--33655952	283	6.9	282	80	6	1762	36	9	15	38	1.80
33655492--33655536	21	2.0	23	83	8	58	31	4	4	60	1.37
33654252--33655978	698	2.5	688	79	7	1655	36	9	15	38	1.80
33658074--33661231	142	22.4	141	77	6	2694	36	9	14	39	1.78
33658074--33661231	428	7.5	422	80	7	2740	36	9	14	39	1.78
33661630--33661671	22	1.9	22	90	0	66	42	16	19	21	1.89
33661989--33662056	29	2.3	29	84	2	82	38	14	13	33	1.85
33669094--33669119	6	4.3	6	100	0	52	84	0	0	15	0.62
33669177--33669212	17	2.2	16	90	5	54	83	5	11	0	0.80
33669323--33669415	8	11.0	8	72	14	62	75	1	4	19	1.03
33669315--33669413	21	4.8	20	75	16	80	73	1	5	20	1.07
33669363--33669420	15	3.9	14	79	20	64	77	0	3	18	0.91
33669367--33669433	32	2.1	32	91	5	109	76	0	5	17	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33669361--33669433	25	3.1	24	80	19	84	76	0	5	17	0.97
33669757--33669901	64	2.3	64	80	5	161	16	35	19	28	1.94
33684290--33684467	27	6.6	27	84	3	205	29	28	15	26	1.96
33684311--33684466	82	1.9	81	88	3	233	29	28	15	26	1.96
33692441--33692618	27	6.6	27	84	3	205	29	28	15	26	1.96
33692462--33692617	82	1.9	81	88	3	233	29	28	15	26	1.96
33699934--33699971	18	2.1	19	90	5	60	26	10	42	21	1.85
33708893--33711823	142	20.5	141	79	5	2711	36	9	15	38	1.79
33708893--33711823	285	10.3	283	80	6	2798	36	9	15	38	1.79
33710342--33710366	7	3.6	7	100	0	50	28	0	16	56	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189