genome.fa.s20.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  117  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32905543--32905615	23	3.2	23	90	0	119	28	26	21	23	1.99
32905702--32905730	8	3.6	8	100	0	58	34	27	13	24	1.93
32905849--32905887	18	2.2	17	86	13	53	46	20	0	33	1.51
32917329--32917595	81	3.3	81	83	1	338	40	21	18	19	1.92
32917329--32917595	27	9.9	27	83	0	291	40	21	18	19	1.92
32919313--32919461	56	2.8	52	79	9	142	20	27	22	29	1.98
32923602--32923893	146	2.0	146	91	1	469	26	23	25	25	2.00
32923881--32924372	27	18.3	27	86	0	500	42	19	18	19	1.89
32926323--32926377	26	2.1	27	93	3	94	45	9	7	38	1.64
32926476--32926502	6	4.5	6	100	0	54	18	0	0	81	0.69
32928436--32928501	34	2.0	34	85	5	91	46	4	3	45	1.38
32933432--32933498	33	2.0	33	97	0	125	35	20	22	20	1.96
32934824--32934852	14	2.1	14	100	0	58	6	31	13	48	1.69
32941316--32941379	28	2.3	28	80	0	83	31	23	18	26	1.98
32961491--32961519	12	2.3	13	94	5	51	65	6	6	20	1.40
32963144--32963200	23	2.4	23	82	2	78	71	8	0	19	1.11
32963164--32963196	8	4.2	8	84	7	50	63	12	0	24	1.28
32963152--32963226	27	3.1	24	75	15	75	66	12	0	21	1.23
32971199--32971228	3	10.0	3	92	0	51	63	0	3	33	1.11
32971793--32971831	16	2.7	16	85	14	50	61	0	0	38	0.96
32971936--32971973	14	2.4	17	87	12	55	52	0	0	47	1.00
32971953--32971991	12	3.4	11	80	13	51	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32973406--32973447	6	7.0	6	78	10	50	16	4	0	78	0.91
32973406--32973453	23	2.0	25	92	8	82	14	8	0	77	0.99
32974802--32974841	20	2.1	20	86	9	57	25	5	10	60	1.49
32978000--32978599	87	6.9	87	87	1	848	24	22	22	30	1.99
32978000--32978599	173	3.5	174	87	1	832	24	22	22	30	1.99
32978321--32978458	44	3.2	43	67	17	113	26	24	23	26	2.00
32979831--32979884	7	8.0	7	95	4	94	14	25	0	59	1.36
32980792--32980869	40	1.9	41	92	2	131	8	10	7	73	1.26
32985535--32985750	108	2.0	108	99	0	423	31	24	18	25	1.98
32987963--32988171	40	5.3	40	91	1	305	23	21	28	26	1.99
32987963--32988171	79	2.6	79	90	3	330	23	21	28	26	1.99
32995847--32996105	40	6.6	40	85	6	282	24	20	27	27	1.99
32995883--32996140	115	2.2	119	81	4	292	25	20	27	26	1.99
33002309--33002478	6	27.8	6	94	3	187	17	8	0	74	1.05
33003388--33003660	29	9.3	29	77	4	181	36	14	24	24	1.93
33018378--33018776	50	7.8	50	84	5	471	26	22	30	21	1.99
33018382--33018769	101	3.8	100	85	5	458	26	22	30	20	1.99
33018389--33018776	150	2.5	151	89	3	564	25	22	30	21	1.98
33020988--33021047	21	2.9	21	92	0	102	51	18	18	11	1.75
33025067--33025101	14	2.5	14	95	0	61	28	25	20	25	1.99
33029043--33029107	13	5.5	13	72	20	70	47	15	0	36	1.46
33029043--33029116	23	3.2	23	94	0	121	48	14	0	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33029907--33029968	30	2.1	30	84	0	79	37	17	11	33	1.86
33029937--33030025	28	3.2	28	80	0	97	38	19	12	30	1.88
33031061--33031096	18	1.9	18	88	5	54	44	0	0	55	0.99
33031315--33031358	18	2.5	18	92	3	72	50	4	0	45	1.22
33031588--33031641	22	2.3	24	78	9	58	40	7	0	51	1.30
33032441--33032482	2	21.0	2	100	0	84	0	50	0	50	1.00
33043632--33043688	27	2.1	27	80	6	62	71	1	21	5	1.14
33045618--33045661	22	2.0	22	90	0	70	56	6	2	34	1.38
33048056--33048143	43	2.0	43	95	0	158	37	17	7	37	1.79
33049976--33050224	76	3.3	75	82	4	261	40	14	10	34	1.80
33054811--33054927	48	2.3	48	82	7	135	26	8	14	50	1.71
33055231--33055301	31	2.3	31	85	2	90	35	8	9	46	1.67
33058834--33058987	28	5.5	28	94	0	256	34	28	10	26	1.89
33062834--33063095	82	3.2	82	87	4	368	39	22	22	15	1.91
33062834--33063087	123	2.1	122	80	4	278	39	23	22	14	1.91
33062834--33063094	41	6.4	41	78	5	251	39	22	22	15	1.91
33068465--33068501	15	2.5	15	90	0	56	29	56	5	8	1.51
33071042--33071068	14	1.9	14	100	0	54	0	22	0	77	0.76
33076293--33076957	347	1.9	347	97	1	1260	36	13	11	37	1.82
33077624--33077673	21	2.2	21	82	10	55	44	18	14	24	1.86
33078855--33079284	96	4.6	97	79	13	465	41	1	17	39	1.60
33079061--33079234	83	2.1	81	93	4	303	42	2	17	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33078869--33079289	179	2.3	186	85	6	579	42	1	17	39	1.59
33079320--33079594	126	2.2	125	90	2	428	34	16	20	28	1.94
33092527--33092563	15	2.5	15	86	0	56	37	0	0	62	0.96
33093294--33093334	16	2.6	16	84	0	55	24	0	17	58	1.38
33095836--33095922	40	2.2	40	95	0	156	42	28	5	22	1.77
33106037--33106061	13	1.9	13	100	0	50	52	0	0	48	1.00
33114458--33114482	13	1.9	13	100	0	50	32	16	0	52	1.44
33115129--33115321	95	2.0	95	89	2	298	32	13	15	38	1.86
33115816--33115848	17	1.9	17	88	11	50	60	9	12	18	1.57
33117804--33117864	32	1.9	32	86	0	86	36	8	14	40	1.76
33122367--33122430	22	3.0	21	76	15	67	29	20	15	34	1.94
33126235--33126270	15	2.4	15	95	0	63	25	13	8	52	1.68
33129870--33130140	9	29.0	9	69	14	124	35	2	2	59	1.25
33129930--33130030	19	5.3	18	69	19	62	39	1	1	56	1.22
33129923--33130079	38	4.2	37	74	16	110	38	1	2	56	1.24
33130101--33130131	8	4.0	8	91	8	55	25	0	0	74	0.82
33130101--33130129	15	1.9	15	100	0	58	24	0	0	75	0.80
33130094--33130142	25	2.0	25	88	8	73	26	0	2	71	0.97
33130620--33131155	201	2.7	201	87	2	738	40	12	10	36	1.77
33131219--33131256	20	2.0	20	89	5	60	31	26	23	18	1.97
33137908--33137932	3	8.3	3	100	0	50	68	0	0	32	0.90
33138592--33138675	22	3.9	22	74	12	77	16	8	19	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33138574--33138675	42	2.4	43	80	11	122	17	9	17	54	1.69
33138574--33138686	20	5.4	20	77	9	111	18	11	16	53	1.73
33138768--33138824	21	2.8	20	75	5	60	22	10	12	54	1.68
33138818--33138863	22	2.1	22	83	0	56	17	10	13	58	1.62
33138764--33138880	20	5.7	20	71	13	76	20	11	13	53	1.71
33139962--33139993	4	8.0	4	100	0	64	0	25	0	75	0.81
33141806--33141855	25	2.0	24	84	7	64	38	12	10	40	1.76
33143651--33143785	43	3.2	43	77	11	134	21	14	28	36	1.92
33144889--33144972	19	4.4	18	82	8	80	38	8	17	35	1.80
33144891--33144965	19	3.8	19	91	6	123	37	9	16	37	1.80
33144892--33144954	21	3.1	21	95	4	112	38	9	14	38	1.78
33144904--33144988	21	4.0	22	79	14	81	37	7	16	38	1.76
33144954--33144998	23	2.0	23	86	4	65	33	4	15	46	1.66
33145164--33145202	19	2.0	21	85	10	55	15	10	5	69	1.34
33145592--33145634	4	11.0	4	82	5	52	23	0	2	74	0.93
33145825--33146027	100	2.0	100	95	1	365	34	8	7	49	1.61
33148577--33148608	15	2.1	15	94	0	55	68	9	6	15	1.36
33153976--33154016	21	1.9	22	85	5	57	34	0	0	65	0.93
33155139--33155183	24	1.9	24	90	4	74	31	2	4	62	1.27
33155140--33155190	24	2.2	24	82	3	59	35	1	3	58	1.28
33155571--33155622	6	8.5	6	80	19	63	65	1	0	32	1.04
33155563--33155622	18	3.3	19	78	21	67	65	1	0	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33160869--33161002	9	14.9	9	68	18	57	62	3	2	31	1.25
33160885--33160965	11	7.6	10	73	21	51	64	2	1	32	1.15
33160902--33160965	21	3.2	21	73	24	66	67	3	1	28	1.15
33160880--33160968	21	4.1	21	70	21	60	64	3	1	31	1.17
33161071--33161102	16	2.0	16	93	0	55	71	0	0	28	0.86
33163428--33163502	33	2.4	31	82	10	98	41	22	24	12	1.87
33163438--33163502	33	2.0	33	93	0	112	41	23	21	13	1.89
33166699--33166978	30	9.4	30	76	9	207	21	25	14	38	1.91
33166696--33166956	89	2.9	89	82	6	280	21	25	14	38	1.91
33166699--33166978	119	2.4	119	90	0	452	21	25	14	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189