genome.fa.s20.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  147  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44583446--44583487	14	2.9	14	82	6	57	35	35	0	28	1.58
44583442--44583488	15	3.3	15	82	8	62	40	31	0	27	1.57
44583846--44583953	40	2.7	40	88	1	162	29	30	19	20	1.97
44586230--44586386	77	2.0	77	96	2	289	33	22	12	31	1.92
44586656--44586704	20	2.5	20	93	0	80	22	18	12	46	1.82
44587463--44587505	23	1.9	22	85	4	59	62	2	4	30	1.28
44588224--44588260	12	3.2	12	88	3	58	78	0	5	16	0.93
44588224--44588256	6	5.7	6	85	7	50	81	0	3	15	0.80
44588223--44588278	27	2.3	23	81	12	58	76	0	8	14	1.00
44588852--44588912	21	3.2	21	61	29	55	44	8	19	27	1.79
44588843--44588911	35	2.0	35	100	0	138	43	7	20	28	1.78
44594104--44594176	35	2.1	35	89	0	110	19	12	30	38	1.88
44597669--44597701	10	3.5	10	84	16	52	48	24	0	27	1.51
44608849--44608888	18	2.2	18	86	8	55	20	17	12	50	1.78
44614881--44614972	38	2.5	36	82	3	103	32	40	11	15	1.84
44624299--44624361	30	2.1	30	94	5	110	57	12	3	26	1.51
44624430--44624470	21	2.0	21	90	0	64	9	19	29	41	1.83
44624514--44624700	43	4.4	43	79	4	164	32	27	16	24	1.96
44625713--44625804	46	2.0	46	82	2	112	38	13	20	28	1.90
44628975--44628999	7	3.6	7	100	0	50	56	0	44	0	0.99
44629666--44629914	132	1.9	132	84	6	335	41	27	1	29	1.63
44629940--44629972	14	2.3	15	94	5	59	36	33	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44630024--44630057	14	2.4	14	95	0	59	50	23	0	26	1.50
44635063--44635110	13	3.4	14	80	8	53	41	0	0	58	0.98
44635791--44635823	14	2.3	15	94	5	59	36	33	0	30	1.58
44635875--44635908	14	2.4	14	95	0	59	50	23	0	26	1.50
44636252--44636445	41	4.8	41	87	3	277	30	23	20	25	1.99
44636513--44636624	40	2.8	40	82	8	140	18	16	25	40	1.91
44637404--44637468	7	9.4	7	83	1	78	18	0	35	46	1.50
44637451--44637487	15	2.4	16	90	4	58	27	0	29	43	1.55
44637511--44637812	96	3.1	95	87	3	419	37	2	18	41	1.66
44637857--44638265	126	3.2	126	92	0	665	32	16	22	29	1.95
44638527--44638575	16	3.1	16	90	0	80	30	0	36	32	1.58
44638980--44639184	88	2.3	90	86	6	265	47	3	3	45	1.38
44639037--44639165	47	2.8	45	70	15	113	49	4	2	43	1.36
44642465--44642503	19	2.1	19	95	0	69	43	5	46	5	1.48
44651058--44651125	28	2.4	28	83	16	95	76	7	8	7	1.16
44652064--44652097	17	1.9	17	88	5	50	85	0	5	8	0.75
44653348--44654311	87	11.0	87	79	6	932	26	24	25	23	2.00
44653348--44654311	175	5.5	173	81	4	1001	26	24	25	23	2.00
44653348--44654273	262	3.5	261	88	1	1302	26	24	25	23	2.00
44654072--44654215	45	3.2	45	71	3	139	28	20	25	25	1.99
44654311--44654493	44	4.2	44	89	0	285	27	21	24	26	2.00
44654311--44654493	88	2.1	88	95	0	330	27	21	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44659911--44659975	11	5.9	11	77	13	62	46	0	29	24	1.53
44659911--44659975	23	3.0	21	86	10	94	46	0	29	24	1.53
44660472--44660506	18	1.9	18	88	11	54	37	2	2	57	1.29
44662893--44663142	123	2.0	123	100	0	500	19	20	20	40	1.91
44669831--44669967	68	2.0	70	84	5	181	43	3	4	48	1.40
44669899--44669960	17	3.7	17	72	12	65	50	3	1	45	1.27
44669877--44669970	33	2.7	33	74	23	95	47	2	5	44	1.37
44673568--44673616	20	2.5	20	86	0	62	48	2	22	26	1.61
44673579--44673624	20	2.3	20	92	0	74	43	0	32	23	1.54
44680798--44680870	24	3.0	24	73	13	69	41	1	4	53	1.28
44686763--44687302	125	4.3	125	83	3	683	30	16	22	30	1.96
44690470--44691075	22	28.0	21	79	8	562	26	0	28	45	1.54
44690470--44691075	43	14.0	43	81	6	618	26	0	28	45	1.54
44690470--44691075	65	9.4	64	79	8	538	26	0	28	45	1.54
44691620--44691662	18	2.4	18	84	0	59	46	9	27	16	1.77
44692460--44692497	20	1.9	20	84	10	51	57	7	0	34	1.28
44693434--44693531	51	1.9	51	83	4	126	44	2	24	28	1.65
44693493--44693571	12	6.9	11	70	18	63	46	1	26	25	1.60
44694365--44694432	28	2.4	28	80	4	75	50	17	4	27	1.65
44694625--44694655	4	7.8	4	100	0	62	77	0	0	22	0.77
44699940--44700005	33	2.0	33	100	0	132	54	3	18	24	1.57
44700391--44700479	39	2.2	40	84	5	110	51	4	4	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44701090--44701135	23	2.0	23	95	0	83	41	0	10	47	1.38
44703377--44703410	17	1.9	17	88	5	50	44	0	0	55	0.99
44704969--44704998	13	2.2	14	94	5	53	43	13	0	43	1.43
44712675--44712706	9	3.6	9	100	0	64	56	0	0	43	0.99
44712673--44712716	18	2.5	17	82	10	61	56	2	0	40	1.11
44728065--44728123	21	2.7	21	86	5	82	3	28	3	64	1.26
44730903--44730935	15	2.2	15	94	0	57	45	15	6	33	1.70
44731965--44732022	25	2.3	25	90	0	98	53	25	8	12	1.66
44741858--44741938	20	4.1	20	75	12	76	41	19	25	12	1.87
44742292--44742383	47	2.0	47	93	0	157	41	15	8	34	1.78
44754163--44754193	12	2.6	12	94	0	53	9	25	38	25	1.86
44766487--44766526	21	1.9	21	89	0	62	45	30	5	20	1.72
44767637--44767665	9	3.2	9	100	0	58	44	0	0	55	0.99
44768280--44768311	2	16.0	2	93	0	55	46	0	3	50	1.17
44769735--44769782	25	1.9	25	83	8	62	60	8	20	10	1.55
44781835--44781865	16	1.9	16	93	0	53	48	0	3	48	1.17
44782341--44782395	28	2.0	26	82	6	65	23	9	7	60	1.52
44791729--44792112	194	2.0	194	90	0	606	34	18	14	32	1.91
44795755--44795843	27	3.3	27	90	0	142	40	23	15	20	1.91
44795767--44795853	27	3.2	26	85	6	95	37	27	13	20	1.91
44795770--44795875	27	4.0	26	79	11	74	37	22	16	22	1.94
44796207--44796295	28	3.2	27	90	4	126	22	22	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44801750--44801785	5	7.0	5	87	6	54	19	0	0	80	0.71
44805648--44805687	20	2.0	20	85	9	55	35	0	2	62	1.09
44806006--44806046	16	2.6	16	78	21	50	63	0	4	31	1.15
44808633--44808659	3	9.0	3	100	0	54	66	0	0	33	0.92
44809674--44809701	2	14.0	2	100	0	56	50	0	0	50	1.00
44813184--44813234	22	2.3	22	80	16	61	68	0	0	31	0.90
44817604--44817658	13	4.2	13	77	13	51	36	1	21	40	1.64
44817922--44817964	9	4.4	9	78	16	50	46	0	2	51	1.13
44817927--44817972	22	2.1	22	92	4	76	47	2	2	47	1.26
44820600--44820653	18	2.9	19	81	8	67	75	3	1	18	1.03
44820606--44820666	18	3.4	17	76	10	59	73	3	3	19	1.11
44820863--44820910	3	16.0	3	78	8	53	60	2	6	31	1.33
44824229--44824320	3	30.7	3	91	4	150	63	0	35	1	1.02
44827207--44827255	6	8.2	6	80	17	57	83	0	14	2	0.73
44827213--44827255	18	2.4	18	92	7	70	83	0	16	0	0.64
44827974--44828066	46	2.0	46	97	0	177	44	6	2	47	1.41
44835893--44835944	20	2.8	18	78	21	63	51	3	1	42	1.31
44837545--44837572	7	4.0	7	100	0	56	42	0	28	28	1.56
44841665--44841714	15	3.4	14	78	10	55	4	14	4	78	1.05
44845752--44845839	43	2.0	43	95	0	158	26	11	19	43	1.84
44850045--44850074	12	2.5	12	94	0	51	13	13	26	46	1.80
44851612--44851640	14	2.0	15	93	6	51	68	6	3	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44852601--44852766	43	3.9	43	75	9	126	32	26	15	25	1.96
44855036--44855099	27	2.2	30	86	8	89	70	7	4	17	1.29
44864881--44865036	45	3.5	46	85	5	203	22	20	13	43	1.86
44894564--44894604	19	2.2	19	100	0	82	60	9	0	29	1.28
44894985--44895093	56	2.0	55	92	5	184	38	8	12	40	1.74
44897266--44897372	56	1.9	55	90	1	169	39	9	10	41	1.71
44899953--44899984	16	2.0	16	100	0	64	37	12	18	31	1.88
44901034--44901067	13	2.6	13	95	0	59	50	14	8	26	1.72
44902889--44902919	15	2.1	15	93	0	53	32	9	0	58	1.31
44903679--44904085	107	3.8	107	91	0	629	30	18	18	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189