genome.fa.s20.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  187  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55819767--55819992	42	5.3	42	87	1	281	20	17	27	34	1.95
55821102--55821147	24	1.9	24	95	0	83	34	23	4	36	1.75
55823418--55823560	49	2.9	49	92	1	223	23	14	29	32	1.94
55826707--55826853	37	4.0	37	90	1	217	36	14	23	25	1.93
55828436--55828484	21	2.3	21	83	10	64	36	16	2	44	1.59
55830082--55830125	6	7.2	6	92	5	70	15	18	0	65	1.27
55831468--55831496	6	4.8	6	100	0	58	0	65	0	34	0.93
55836799--55836823	3	8.3	3	100	0	50	36	0	0	64	0.94
55845624--55845672	21	2.3	21	83	10	64	36	16	2	44	1.59
55846391--55846530	43	3.3	43	85	4	183	27	29	20	22	1.98
55846944--55847036	21	4.4	21	83	0	114	8	44	15	32	1.76
55847027--55847173	66	2.2	66	85	2	197	14	29	15	39	1.88
55848823--55848872	21	2.5	20	78	12	59	42	2	10	46	1.49
55848847--55849027	34	5.5	34	78	11	198	41	2	9	45	1.52
55848847--55849011	65	2.5	65	92	1	269	41	2	9	46	1.50
55848992--55849036	25	2.0	22	83	16	56	46	2	6	44	1.42
55849302--55849677	43	8.8	43	87	3	449	28	31	16	23	1.96
55854839--55854887	20	2.4	22	80	13	59	34	44	2	18	1.61
55854940--55855000	29	2.1	29	81	0	68	29	40	4	24	1.76
55855577--55855713	40	3.4	40	79	5	143	18	21	21	37	1.94
55857901--55858228	81	3.8	89	82	12	377	44	24	1	28	1.64
55858710--55859415	113	6.3	114	83	5	875	31	24	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55859389--55859517	40	3.3	39	71	12	111	22	20	21	35	1.96
55860103--55860140	6	6.2	6	90	6	58	15	18	0	65	1.27
55860108--55860235	63	2.0	62	90	1	202	28	14	6	50	1.67
55860176--55860203	6	4.7	6	100	0	56	14	14	0	71	1.15
55860117--55860252	63	2.2	58	82	10	148	27	17	5	48	1.70
55868463--55868501	19	2.1	19	85	4	53	35	2	2	58	1.25
55876185--55876209	10	2.5	10	100	0	50	28	20	20	32	1.97
55878629--55878792	75	2.2	75	79	4	188	33	23	12	30	1.92
55878689--55878792	25	4.2	25	71	10	79	32	23	13	30	1.93
55882650--55882682	14	2.4	14	94	0	57	12	12	0	75	1.04
55883683--55883715	15	2.3	14	94	5	57	30	0	0	69	0.88
55883742--55883819	26	3.0	25	75	5	77	26	5	8	58	1.49
55886533--55886575	20	2.2	20	86	0	59	13	23	11	51	1.74
55897421--55897655	44	5.1	47	70	16	197	45	2	3	48	1.34
55897406--55897690	91	3.1	91	93	0	473	47	3	3	45	1.35
55897643--55897711	16	4.2	17	71	26	58	53	2	0	43	1.15
55897406--55897729	91	3.6	91	79	15	318	47	3	2	46	1.32
55897637--55897782	49	2.8	52	81	9	167	48	2	0	48	1.15
55897688--55898027	54	5.8	55	69	19	199	44	3	4	47	1.39
55897720--55898015	120	2.5	120	93	1	495	43	3	4	47	1.42
55897790--55897980	61	3.2	60	68	19	162	42	3	6	47	1.48
55897794--55897977	59	3.1	59	65	13	133	42	3	7	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55897960--55897995	18	2.0	18	88	0	54	44	0	0	55	0.99
55901175--55901224	12	4.2	12	78	0	55	24	2	16	58	1.49
55906433--55906470	18	2.2	17	86	9	51	23	5	2	68	1.23
55923546--55923573	4	7.0	4	100	0	56	50	0	25	25	1.50
55926217--55926251	16	2.3	15	90	5	52	80	5	14	0	0.89
55926834--55926869	17	2.1	17	90	10	56	50	5	0	44	1.25
55928820--55928883	27	2.4	27	86	2	85	53	4	1	40	1.31
55929737--55929805	29	2.3	29	85	5	84	49	14	14	21	1.79
55930443--55930484	14	3.2	14	77	16	54	76	9	0	14	1.02
55936592--55936816	106	2.1	106	91	0	362	26	13	24	36	1.92
55940779--55940809	9	3.4	9	95	0	53	38	25	9	25	1.86
55940817--55940879	17	3.5	17	69	12	54	49	12	3	34	1.57
55940808--55940882	37	2.0	37	94	0	132	45	14	4	36	1.64
55941020--55941118	45	2.2	45	94	1	173	19	2	24	54	1.54
55941015--55941135	39	3.0	39	82	14	154	19	2	26	51	1.60
55941118--55941168	17	2.9	16	88	11	66	21	0	37	41	1.54
55942064--55942107	23	1.9	23	81	9	54	40	22	6	29	1.80
55944442--55944483	6	7.0	6	97	0	66	45	50	4	0	1.23
55946993--55947028	17	2.2	16	90	5	54	30	0	0	69	0.89
55950201--55950229	3	9.7	3	100	0	58	31	0	0	68	0.89
55956422--55956462	4	10.2	4	100	0	82	24	24	0	51	1.49
55963435--55963926	44	10.9	45	74	14	295	32	19	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55963377--55963926	182	3.0	180	73	14	464	31	19	20	27	1.97
55963703--55963880	94	1.9	94	81	6	218	29	19	23	28	1.98
55963517--55963971	138	3.3	138	79	5	456	32	18	21	27	1.97
55969994--55970143	41	3.7	41	90	0	237	24	28	18	28	1.98
55969992--55970180	82	2.3	80	85	7	247	26	26	19	27	1.99
55970661--55970693	12	2.8	12	90	4	50	51	9	3	36	1.49
55970487--55970913	112	3.8	114	95	1	754	40	14	3	40	1.64
55970775--55970807	6	5.7	6	85	7	50	51	12	3	33	1.54
55970487--55970913	226	1.9	225	94	1	757	40	14	3	40	1.64
55971882--55971906	13	1.9	13	100	0	50	68	24	0	8	1.16
55973949--55973981	3	11.0	3	100	0	66	66	0	0	33	0.92
55974733--55974766	16	2.1	17	88	5	52	50	2	2	44	1.32
55975500--55975525	7	3.7	7	100	0	52	38	0	0	61	0.96
55983114--55983155	22	1.9	22	85	9	59	50	0	26	23	1.50
55983299--55983402	52	2.0	52	94	0	181	21	16	30	31	1.95
55983421--55983478	29	2.0	29	89	0	89	43	17	8	31	1.79
55993760--55993852	3	31.0	3	95	0	168	0	31	0	68	0.90
55995854--55996504	114	5.7	114	81	7	725	25	21	25	27	1.99
55996833--55996865	14	2.3	15	94	5	59	30	0	33	36	1.58
55996870--55996919	14	3.5	15	78	13	52	32	0	32	36	1.58
55996939--55997095	80	1.9	82	85	5	221	28	0	27	44	1.55
55997076--55997121	21	2.2	21	84	7	58	17	0	45	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55997075--55997110	14	2.5	15	90	9	65	13	0	47	38	1.44
55997499--55997566	21	3.3	21	79	10	68	11	0	38	50	1.39
55998415--55998739	147	2.2	147	80	5	345	27	15	22	35	1.94
55998487--55998755	147	1.8	147	83	4	355	27	15	22	34	1.94
56000212--56000243	15	2.1	15	100	0	64	28	6	12	53	1.62
56000999--56001054	18	3.0	19	85	10	71	39	1	1	57	1.20
56001205--56001369	13	12.5	13	74	7	136	40	9	3	46	1.54
56001229--56001378	53	2.8	53	96	0	273	41	10	3	45	1.54
56001513--56001688	33	5.5	32	67	20	84	42	15	2	39	1.60
56001703--56002039	9	38.8	9	74	14	280	45	21	1	32	1.59
56001707--56001987	79	3.7	79	85	11	365	46	20	1	31	1.58
56001848--56002035	71	2.7	68	81	12	181	44	21	1	32	1.62
56001876--56002047	25	6.6	25	73	11	123	44	20	1	33	1.62
56004050--56004122	21	3.5	21	90	3	103	34	17	42	5	1.73
56004691--56004736	22	2.1	21	88	4	65	45	28	15	10	1.79
56005824--56005869	20	2.2	22	84	7	60	41	2	2	54	1.25
56011510--56011645	51	2.7	51	79	2	157	39	5	13	41	1.68
56013332--56013619	96	3.0	96	92	0	450	36	17	33	12	1.88
56014523--56014658	51	2.7	51	80	0	173	40	5	13	40	1.68
56027657--56027776	64	1.9	64	98	0	231	30	14	26	28	1.95
56028834--56028886	24	2.2	24	86	0	70	18	30	20	30	1.97
56030563--56030599	18	2.1	18	94	0	65	16	40	8	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56036657--56036688	15	2.1	15	94	0	55	15	6	9	68	1.36
56048672--56048744	36	2.0	36	91	0	119	21	19	12	46	1.82
56051870--56051946	21	3.6	21	75	6	64	37	24	20	16	1.93
56051859--56051965	23	4.9	22	79	6	94	37	25	18	18	1.94
56054637--56054707	36	2.0	36	85	0	97	38	19	2	39	1.67
56065508--56065624	41	2.8	42	81	10	143	31	27	20	20	1.97
56065710--56065831	64	1.9	64	87	0	181	42	13	7	36	1.73
56065860--56065986	60	2.1	60	82	5	150	42	14	3	38	1.65
56068240--56068465	78	2.9	78	91	0	380	29	19	11	38	1.88
56079087--56079129	3	14.3	3	100	0	86	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189