genome.fa.s20.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  149  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45118275--45118500	53	4.2	53	76	10	249	40	6	7	46	1.56
45118549--45118602	15	3.8	15	71	14	60	24	0	29	46	1.53
45118579--45118747	22	7.5	22	82	10	182	24	0	28	45	1.58
45118579--45118695	21	5.4	21	84	9	139	25	0	29	45	1.54
45118662--45118724	29	2.2	29	94	0	108	19	1	33	46	1.59
45118579--45118746	43	3.7	42	77	16	167	25	0	29	45	1.58
45118764--45118803	7	5.9	7	83	16	57	52	0	0	47	1.00
45118761--45118803	12	3.3	12	78	15	50	53	0	0	46	1.00
45121110--45121139	16	1.9	15	93	6	51	46	0	0	53	1.00
45121144--45121241	51	1.9	51	87	4	144	45	2	25	26	1.64
45121224--45121255	11	2.9	11	95	0	55	46	3	31	18	1.65
45121721--45121790	31	2.3	31	89	0	113	31	14	14	40	1.86
45127017--45127049	16	2.1	16	94	0	57	72	21	0	6	1.05
45128928--45129052	50	2.5	50	81	0	160	21	28	23	27	1.99
45132535--45133016	238	2.0	239	94	1	851	31	22	13	32	1.93
45137804--45137861	29	2.0	29	100	0	116	24	24	17	34	1.96
45142832--45143030	90	2.2	90	78	5	215	30	19	13	37	1.89
45144013--45144079	32	2.1	31	83	8	82	52	4	0	43	1.21
45160126--45160181	21	2.6	21	91	5	85	46	1	30	21	1.62
45160317--45160445	69	1.9	68	93	1	222	48	6	24	20	1.72
45162940--45163103	43	3.9	42	76	10	147	30	25	14	29	1.94
45167436--45167477	18	2.3	19	84	8	61	38	0	59	2	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45183129--45183193	32	2.1	32	97	2	123	47	12	9	30	1.72
45186342--45186417	11	7.0	11	75	21	72	0	11	9	78	0.95
45186328--45186406	33	2.3	35	91	8	128	0	12	10	77	1.00
45186633--45186663	4	8.0	4	92	7	55	74	0	0	25	0.82
45186966--45187030	32	2.1	32	94	2	114	47	13	9	29	1.74
45189912--45189945	17	1.9	18	88	5	52	44	5	11	38	1.65
45196243--45196349	41	2.6	40	91	2	160	51	3	23	21	1.64
45196495--45196542	23	2.1	23	84	0	60	41	35	4	18	1.70
45204459--45204492	18	1.9	18	88	5	52	47	2	5	44	1.42
45204521--45204555	15	2.3	15	85	0	52	37	0	0	62	0.95
45204797--45204827	16	1.9	16	93	0	53	51	0	3	45	1.17
45208920--45208950	15	2.1	15	100	0	62	12	22	12	51	1.74
45218320--45218363	22	2.0	22	100	0	88	45	22	9	22	1.80
45222676--45222730	15	3.5	15	72	13	56	10	50	9	29	1.68
45222687--45222745	18	3.5	17	71	15	59	16	50	5	27	1.66
45222675--45222784	33	3.3	33	87	2	141	14	51	9	24	1.71
45222768--45222861	36	2.6	36	93	0	152	23	44	12	19	1.85
45227617--45227644	4	7.0	4	100	0	56	75	0	0	25	0.81
45228996--45229048	23	2.4	22	76	20	56	9	18	1	69	1.25
45238785--45238868	29	2.9	30	76	5	100	26	17	22	33	1.96
45239810--45239835	4	6.5	4	100	0	52	50	0	0	50	1.00
45249643--45249686	19	2.2	19	84	12	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45249643--45249681	16	2.5	15	83	8	51	43	0	2	53	1.14
45250270--45250386	39	3.0	39	88	1	173	49	27	3	19	1.64
45250677--45250734	27	2.1	27	83	3	71	37	8	15	37	1.78
45250687--45250744	27	2.1	27	87	0	80	39	8	17	34	1.80
45256489--45256546	16	3.6	16	71	2	53	39	13	8	37	1.76
45257780--45257814	18	1.9	18	88	0	52	60	0	0	40	0.97
45260953--45261003	26	1.9	27	84	4	68	41	0	17	41	1.50
45261198--45261233	18	2.0	18	89	10	56	22	0	0	77	0.76
45261207--45261240	18	1.9	18	88	5	52	26	0	0	73	0.83
45261401--45261442	17	2.4	18	84	11	61	40	2	4	52	1.35
45261410--45261441	16	1.9	17	93	6	57	43	0	6	50	1.27
45265249--45265275	5	5.4	5	100	0	54	18	0	40	40	1.51
45265589--45265629	22	1.9	21	85	14	57	78	4	7	9	1.10
45267876--45267908	14	2.4	14	90	10	50	48	3	3	45	1.33
45268182--45268214	17	2.0	17	94	5	59	45	0	0	54	0.99
45269783--45269840	23	2.8	20	76	16	64	17	29	8	44	1.78
45287790--45287824	13	2.6	14	81	9	54	51	14	17	17	1.77
45288265--45288301	17	2.2	17	90	0	56	21	37	24	16	1.93
45288293--45288333	18	2.3	18	87	8	57	21	41	19	17	1.90
45288412--45288445	12	2.8	12	95	0	59	32	47	17	2	1.63
45289776--45289898	42	3.0	42	83	8	146	26	13	25	34	1.93
45290116--45290149	17	1.9	18	94	5	61	29	0	17	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45294554--45294584	15	2.1	15	94	5	55	32	16	0	51	1.44
45295000--45295042	21	2.0	21	81	0	50	41	0	4	53	1.21
45297068--45297168	52	1.9	52	91	0	166	18	6	46	27	1.75
45303113--45303386	139	2.0	139	95	1	496	21	27	19	31	1.98
45311588--45311712	38	3.3	38	79	1	133	36	13	16	32	1.88
45311588--45311726	38	3.6	38	79	2	118	36	13	17	32	1.89
45311656--45311734	38	2.1	38	83	4	97	36	15	18	29	1.92
45315467--45315495	5	5.8	5	100	0	58	58	0	0	41	0.98
45317518--45317617	28	3.6	27	77	10	87	49	4	1	46	1.27
45319583--45319704	25	5.0	24	77	12	122	16	28	21	33	1.95
45319582--45319704	50	2.5	49	83	10	153	17	28	21	33	1.95
45325168--45325209	21	2.0	21	85	0	57	38	0	19	42	1.51
45325567--45325715	25	6.0	26	71	12	107	20	27	20	31	1.97
45325544--45325686	50	2.9	49	81	8	148	19	27	18	34	1.96
45325573--45325686	25	4.7	24	78	7	115	17	29	21	31	1.96
45327619--45327668	20	2.5	21	83	6	68	66	4	0	30	1.10
45330635--45330681	22	2.1	23	84	11	62	19	10	0	70	1.16
45330667--45330710	21	2.2	20	87	4	61	36	4	0	59	1.18
45350305--45350329	5	5.0	5	100	0	50	0	60	0	40	0.97
45352476--45352508	3	11.0	3	100	0	66	66	0	33	0	0.92
45354954--45355082	59	2.4	57	83	11	164	44	22	6	25	1.77
45354978--45355092	59	2.0	58	92	1	194	46	20	8	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45355369--45355555	6	31.2	6	83	4	162	54	14	10	20	1.69
45360650--45360696	3	16.7	3	84	8	55	70	0	2	27	0.99
45365063--45365093	9	3.4	9	95	0	53	0	25	0	74	0.82
45372223--45372249	12	2.2	12	100	0	54	0	11	0	88	0.50
45372393--45372417	12	2.1	12	100	0	50	44	0	8	48	1.32
45375993--45376115	43	3.0	40	82	5	138	27	28	17	26	1.97
45380671--45380781	41	2.7	41	88	0	150	24	39	15	20	1.91
45383545--45383582	18	2.1	18	100	0	76	36	21	5	36	1.76
45388786--45388832	22	2.1	23	84	4	60	48	6	6	38	1.54
45388996--45389080	40	2.1	41	91	2	136	34	1	4	60	1.25
45393851--45393889	17	2.2	18	86	4	53	25	7	17	48	1.74
45393885--45393965	36	2.2	36	82	4	92	29	7	19	43	1.78
45396422--45396527	49	2.2	49	79	6	117	21	23	17	36	1.95
45405314--45405340	13	2.1	13	100	0	54	29	0	22	48	1.51
45407219--45407311	30	3.1	30	93	0	159	23	4	15	56	1.56
45409911--45409954	18	2.4	18	80	0	52	43	20	11	25	1.85
45409941--45409990	24	2.1	24	92	0	82	50	22	8	20	1.74
45412386--45412413	14	2.0	14	100	0	56	42	0	14	42	1.45
45413757--45413794	18	2.1	18	90	0	58	55	2	0	42	1.14
45415385--45415565	57	3.1	57	86	1	236	45	6	19	28	1.74
45418530--45418603	27	2.7	26	81	8	76	17	24	17	40	1.91
45418828--45418992	44	3.7	44	87	0	222	26	24	9	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45421557--45421803	126	2.0	125	87	2	361	31	20	21	26	1.97
45422552--45422596	13	3.4	13	84	6	63	13	0	33	53	1.40
45422626--45422775	14	10.3	14	71	11	86	21	4	37	37	1.72
45422615--45422758	22	6.6	21	70	15	76	20	2	38	38	1.68
45422615--45422778	22	7.5	22	69	16	74	20	3	38	37	1.70
45422949--45423000	21	2.5	21	84	6	70	23	0	21	55	1.43
45425152--45425238	45	1.9	45	90	0	138	33	22	18	25	1.97
45430392--45430450	30	1.9	31	93	3	102	40	13	5	40	1.67
45430548--45430660	48	2.4	48	83	5	140	46	14	1	37	1.55
45430630--45430889	9	30.3	9	72	16	178	46	19	1	32	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189