genome.fa.s20.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  185  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55223459--55223507	20	2.5	20	83	6	64	40	14	22	22	1.90
55223864--55223902	9	4.3	9	86	0	60	30	7	12	48	1.69
55227658--55227707	16	3.0	17	76	5	57	44	0	0	56	0.99
55227675--55227713	20	1.9	21	94	5	71	48	0	0	51	1.00
55229889--55229918	15	2.0	15	93	0	51	36	0	10	53	1.35
55233091--55233607	176	2.8	183	86	7	687	26	13	21	37	1.91
55233240--55233614	194	1.9	193	89	3	585	26	13	21	37	1.91
55235990--55236168	93	2.0	90	86	7	254	24	16	11	48	1.78
55240563--55240596	18	1.9	18	88	5	52	29	0	5	64	1.17
55240626--55240667	15	2.7	16	81	7	50	61	0	0	38	0.96
55240884--55240919	18	1.9	19	88	5	56	41	8	2	47	1.48
55240909--55240976	31	2.4	29	81	13	79	33	11	13	41	1.81
55244599--55244628	2	15.0	2	100	0	60	50	0	50	0	1.00
55247333--55247364	14	2.4	14	90	10	50	37	6	0	56	1.25
55247519--55247551	13	2.5	13	100	0	66	60	0	0	39	0.97
55251685--55251722	19	2.0	19	89	0	58	36	0	15	47	1.46
55251934--55252273	41	8.3	41	90	0	527	29	20	28	22	1.98
55251934--55252267	82	4.1	82	100	0	668	29	20	28	22	1.98
55255541--55255583	19	2.2	20	84	12	54	0	23	2	74	0.93
55270441--55270566	11	12.4	11	69	23	73	37	2	0	60	1.10
55270424--55270554	40	3.3	39	90	5	219	34	2	0	63	1.07
55270528--55270567	21	1.9	21	94	0	71	35	2	0	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55272176--55272296	42	2.9	41	80	8	136	38	16	25	19	1.92
55276436--55276460	13	1.9	13	100	0	50	36	16	0	48	1.46
55277314--55277366	20	2.7	20	71	11	54	39	22	5	32	1.78
55277538--55277677	23	6.1	23	81	6	142	37	20	22	19	1.95
55277566--55277649	22	3.8	22	85	7	116	35	22	22	19	1.96
55277567--55277677	22	4.8	24	85	6	90	37	21	21	18	1.94
55277879--55277972	49	1.9	49	97	0	179	40	20	2	37	1.64
55277922--55278218	67	4.4	67	95	0	540	41	17	3	37	1.66
55278081--55278113	17	1.9	17	93	0	57	33	30	3	33	1.73
55279194--55279230	9	4.1	9	92	0	65	45	13	10	29	1.77
55282423--55282483	30	2.0	30	90	0	95	39	29	6	24	1.80
55284364--55284431	21	3.2	21	76	0	73	14	27	17	39	1.89
55284371--55284452	42	2.0	42	85	0	110	17	26	15	40	1.89
55287424--55287468	2	22.5	2	100	0	90	0	0	48	51	1.00
55288040--55288080	21	2.0	20	85	4	55	29	12	9	48	1.72
55302478--55302535	31	1.9	31	82	3	73	39	1	17	41	1.59
55310519--55310624	50	2.1	50	100	0	212	49	7	3	39	1.49
55313922--55313952	16	1.9	16	100	0	62	25	19	35	19	1.95
55316900--55316946	17	2.7	17	80	3	58	57	23	4	14	1.55
55325676--55325716	3	13.7	3	100	0	82	68	0	0	31	0.90
55325800--55325836	19	1.9	18	89	10	56	56	0	13	29	1.37
55335949--55335979	12	2.6	12	100	0	62	19	25	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55337026--55337121	25	4.0	23	73	9	66	34	17	26	21	1.96
55341375--55341403	15	1.9	15	100	0	58	44	6	13	34	1.71
55355132--55355175	21	2.1	21	100	0	88	22	18	22	36	1.95
55361569--55361634	34	1.9	34	96	0	123	45	0	15	39	1.46
55361578--55361633	17	3.3	17	70	9	60	46	0	14	39	1.44
55365812--55365866	22	2.5	22	82	8	58	58	9	0	32	1.30
55370703--55370741	17	2.3	17	82	8	53	69	0	7	23	1.14
55371129--55371174	24	1.9	24	90	0	74	23	28	15	32	1.95
55371274--55371527	25	10.2	25	70	10	99	20	24	20	34	1.96
55371274--55371378	26	4.2	26	78	10	103	20	24	21	33	1.97
55371335--55371402	24	2.8	25	79	4	75	22	25	19	33	1.97
55371335--55371451	49	2.4	50	82	5	132	20	22	20	36	1.95
55373543--55373601	12	4.1	14	72	20	50	37	1	5	55	1.32
55378977--55379015	13	2.9	13	84	3	51	28	0	2	69	1.02
55383433--55383488	23	2.6	22	80	8	62	46	0	0	53	1.00
55388410--55388623	100	2.1	99	79	8	227	37	20	7	33	1.82
55401195--55401228	18	1.9	18	88	5	52	29	0	5	64	1.17
55401354--55401396	22	2.0	22	82	13	54	65	2	0	32	1.06
55403214--55403267	27	2.0	28	88	3	83	64	5	5	24	1.36
55405544--55405606	30	2.1	30	90	0	99	31	12	28	26	1.93
55408063--55408108	12	4.3	11	76	15	51	76	0	0	23	0.79
55408058--55408110	20	2.5	20	84	6	70	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55415927--55416225	146	2.0	146	96	0	544	42	23	6	27	1.79
55423169--55423666	188	2.8	181	88	4	706	35	19	13	31	1.90
55423494--55423520	4	6.8	4	100	0	54	25	0	22	51	1.48
55424290--55424318	15	1.9	15	100	0	58	34	6	6	51	1.55
55438025--55438150	55	2.3	55	86	8	186	23	8	34	34	1.85
55444184--55444225	21	2.0	21	90	4	68	21	45	0	33	1.52
55448151--55448188	19	2.0	19	100	0	76	26	15	15	42	1.87
55450389--55450482	47	2.0	47	95	0	170	43	7	9	39	1.65
55467552--55467580	2	14.5	2	100	0	58	48	0	0	51	1.00
55468949--55468981	4	8.2	4	100	0	66	51	24	0	24	1.48
55476687--55476730	23	1.9	23	86	9	63	36	0	2	61	1.09
55496801--55496840	20	2.0	20	85	0	53	32	5	10	52	1.56
55499218--55499247	12	2.5	12	94	0	51	30	0	6	63	1.20
55503187--55503229	20	2.2	20	82	0	50	20	16	41	20	1.90
55503493--55503549	5	10.6	5	85	14	78	17	22	0	59	1.37
55503496--55503549	28	2.0	27	96	3	99	18	24	0	57	1.40
55503544--55503605	22	2.9	21	81	11	81	27	9	0	62	1.26
55503536--55503584	25	2.0	24	84	11	64	24	10	0	65	1.23
55503544--55503606	21	3.0	21	82	13	76	26	11	0	61	1.29
55503645--55503756	28	3.8	28	73	13	82	33	17	0	49	1.48
55503664--55503698	17	2.0	18	94	5	63	31	17	0	51	1.45
55503828--55503866	16	2.5	16	91	4	62	23	10	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55503828--55503871	16	2.9	15	83	6	52	22	11	0	65	1.24
55503915--55503956	20	2.0	21	82	13	52	33	7	0	59	1.25
55504149--55504260	17	6.8	16	80	13	113	17	13	0	67	1.27
55504229--55504615	47	8.2	48	88	4	551	26	12	0	60	1.34
55504522--55504608	26	3.5	26	71	19	69	21	13	0	64	1.28
55504534--55504613	21	3.7	20	74	19	61	23	12	1	62	1.37
55504657--55504849	44	4.4	44	96	0	350	37	1	11	49	1.48
55508192--55508236	20	2.1	23	88	12	69	17	4	11	66	1.38
55512210--55512237	6	4.7	6	100	0	56	71	0	14	14	1.15
55512236--55512334	50	2.0	51	82	9	123	74	5	11	9	1.20
55512249--55512352	51	2.1	49	82	10	122	72	4	14	8	1.26
55513114--55513147	7	5.0	7	92	7	61	70	0	14	14	1.17
55513114--55513147	13	2.5	14	95	4	61	70	0	14	14	1.17
55514375--55515323	44	21.7	44	70	12	375	30	20	21	27	1.98
55514375--55514902	219	2.4	217	87	3	734	30	20	22	26	1.98
55514509--55515323	265	3.1	265	91	2	1313	30	19	21	27	1.98
55514774--55515460	219	3.1	219	73	8	511	30	18	21	28	1.97
55515166--55515496	175	1.9	173	87	3	486	30	18	21	29	1.97
55515300--55515717	129	3.2	129	91	0	622	31	19	20	28	1.97
55514426--55515719	44	29.7	44	67	13	331	30	19	21	27	1.98
55515429--55515886	44	10.5	43	69	12	188	30	20	22	26	1.98
55517708--55517747	3	13.3	3	89	0	62	35	0	2	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55519579--55519782	112	1.8	111	90	3	329	31	22	17	28	1.96
55520631--55520667	18	2.1	18	90	10	58	67	0	0	32	0.91
55549844--55549896	7	7.9	7	87	4	74	26	0	1	71	0.96
55549845--55549896	13	3.9	13	79	20	63	26	0	1	71	0.97
55549824--55549909	33	2.6	31	74	18	84	29	1	3	66	1.16
55550242--55550320	30	2.7	28	74	12	70	37	8	10	43	1.70
55550542--55550567	13	2.0	13	100	0	52	53	15	7	23	1.67
55550586--55550643	20	2.9	19	76	5	62	43	8	8	39	1.66
55550602--55550639	19	2.0	19	90	10	60	39	10	7	42	1.69
55556033--55556403	103	3.6	104	89	4	547	31	30	19	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189