genome.fa.s20.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  96  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26740571--26740735	75	2.2	74	78	3	177	28	15	22	33	1.94
26752092--26752144	23	2.4	22	76	20	56	9	18	1	69	1.25
26754483--26754514	12	2.6	12	95	5	55	65	3	6	25	1.31
26760350--26760492	40	3.6	39	83	5	162	20	28	16	33	1.95
26765639--26765692	15	3.7	15	71	14	58	22	7	29	40	1.81
26766241--26766475	119	2.0	119	84	1	310	29	22	11	36	1.89
26772774--26772810	17	2.2	17	95	0	65	29	8	27	35	1.85
26776408--26776446	15	2.6	15	84	12	53	35	0	10	53	1.35
26779383--26779431	23	2.0	25	84	11	66	10	12	4	73	1.22
26779378--26779433	25	2.2	25	78	18	62	8	14	3	73	1.21
26780050--26780263	64	3.4	64	80	1	207	24	23	29	22	1.99
26787005--26787047	17	2.5	17	88	0	59	44	2	23	30	1.66
26788877--26788922	19	2.6	17	80	19	58	8	10	2	78	1.05
26789548--26789673	63	2.0	64	84	1	164	28	23	25	23	1.99
26793253--26793634	190	2.0	189	94	0	665	33	10	20	35	1.86
26794928--26794977	10	4.9	10	83	11	57	42	0	4	54	1.19
26799312--26799345	9	3.7	9	84	7	50	26	2	0	70	1.01
26799293--26799331	16	2.4	17	91	4	62	28	0	2	69	1.02
26810744--26810784	6	7.3	6	86	8	52	0	0	12	87	0.53
26810753--26810785	8	4.2	8	96	3	59	0	0	9	90	0.44
26810747--26810785	16	2.5	15	88	8	60	0	0	10	89	0.48
26818823--26818891	21	3.1	21	69	18	59	23	21	13	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26821951--26822012	30	2.1	30	87	0	88	41	0	38	19	1.51
26822057--26822090	9	3.8	9	88	0	50	29	8	14	47	1.75
26827523--26827549	14	1.9	14	100	0	54	37	11	0	51	1.37
26827638--26827746	28	3.9	27	80	8	112	25	15	15	43	1.86
26827636--26827746	56	2.0	56	85	3	152	26	15	15	43	1.86
26839970--26840235	81	3.3	80	81	6	284	19	15	21	42	1.88
26839966--26840235	27	10.0	27	80	2	256	19	15	21	42	1.89
26843091--26843138	18	2.7	18	90	0	78	37	0	2	60	1.09
26843709--26843762	17	3.3	17	68	19	51	29	3	22	44	1.70
26843704--26843772	32	2.1	33	91	2	113	30	2	23	43	1.68
26845018--26845077	30	2.0	30	100	0	120	43	13	3	40	1.60
26859740--26859801	27	2.3	27	78	10	72	16	29	19	35	1.93
26863981--26864038	26	2.3	26	82	5	75	56	1	1	39	1.19
26863981--26864039	25	2.4	24	78	13	66	57	1	1	38	1.19
26864733--26864789	30	1.9	30	85	7	80	45	10	8	35	1.70
26872399--26872446	10	4.6	10	77	10	51	60	2	2	35	1.20
26873540--26873701	50	3.2	50	86	0	225	26	13	21	38	1.91
26873549--26873680	25	5.3	25	73	17	121	25	15	21	38	1.92
26875516--26875561	16	2.8	17	84	12	60	26	0	2	71	0.97
26876683--26876718	5	7.0	5	96	3	63	19	22	0	58	1.40
26878086--26878111	5	5.2	5	100	0	52	76	23	0	0	0.78
26882633--26882691	30	2.0	30	83	12	77	28	16	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26883795--26883828	14	2.2	16	90	10	54	79	2	5	11	1.02
26888611--26888767	71	2.2	72	84	3	199	40	24	15	19	1.90
26892569--26892635	20	3.5	20	71	6	66	16	32	17	32	1.93
26892545--26892720	39	4.6	39	81	3	169	16	31	17	34	1.92
26892549--26892720	77	2.2	78	81	3	186	16	30	18	34	1.93
26892815--26892985	39	4.4	39	84	1	209	14	30	20	33	1.93
26892822--26892921	19	5.2	19	68	15	71	14	34	19	33	1.91
26892815--26892985	77	2.2	78	87	1	236	14	30	20	33	1.93
26892484--26893015	267	2.0	267	93	0	902	20	22	16	40	1.91
26898659--26898685	14	1.9	14	100	0	54	44	7	14	33	1.73
26916653--26916725	38	1.9	38	94	0	128	41	16	13	28	1.87
26918978--26919283	27	11.3	27	82	2	287	18	15	21	43	1.87
26918978--26919283	54	5.7	54	83	2	330	18	15	21	43	1.87
26918978--26919284	81	3.8	80	78	4	321	18	15	21	43	1.87
26922247--26922608	27	13.5	26	76	10	293	20	17	19	42	1.89
26922249--26922608	54	6.7	54	80	5	381	20	17	18	43	1.89
26922248--26922608	81	4.5	80	81	2	375	20	17	19	42	1.89
26923019--26923376	27	13.3	27	87	1	468	17	17	22	42	1.88
26923637--26923738	53	1.9	53	89	2	159	16	17	19	46	1.85
26923637--26923738	27	3.8	26	88	3	150	16	17	19	46	1.85
26923749--26923846	46	2.1	46	80	0	106	30	27	18	23	1.98
26926181--26926217	17	2.2	17	90	9	58	35	5	8	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26931621--26932313	349	2.0	350	97	0	1318	39	18	12	29	1.87
26934668--26934967	26	11.5	26	83	0	348	38	21	15	25	1.92
26942086--26942203	26	4.5	26	88	4	175	35	18	16	29	1.93
26942357--26942415	27	2.2	28	88	8	88	13	23	20	42	1.88
26955080--26955289	107	2.0	107	89	0	321	43	20	15	20	1.87
26978586--26978696	54	2.1	54	96	0	204	34	27	10	27	1.90
26979600--26979820	43	5.2	43	75	8	193	32	28	16	22	1.96
26979602--26979820	86	2.6	85	82	5	257	31	29	16	22	1.96
26979702--26979819	40	2.9	40	73	8	112	33	30	14	22	1.93
26980802--26980846	21	2.1	21	100	0	90	31	13	22	33	1.92
26981781--26981830	26	1.9	26	83	0	64	20	18	24	38	1.93
26981790--26981854	26	2.5	26	82	0	76	20	18	21	40	1.92
26981951--26982016	33	2.0	33	87	0	96	24	22	24	28	1.99
26987925--26987967	18	2.4	18	88	7	61	46	6	16	30	1.73
27006323--27006382	31	1.9	32	83	10	79	56	5	20	18	1.59
27022628--27022736	43	2.6	43	86	1	139	29	25	17	27	1.97
27031485--27031521	16	2.4	16	86	13	51	45	2	8	43	1.47
27031567--27031757	61	3.2	61	71	14	214	42	2	5	49	1.39
27031522--27031838	120	2.6	120	97	0	607	40	1	5	52	1.34
27031738--27031872	18	8.0	17	70	19	95	37	0	3	57	1.22
27031766--27031822	13	4.2	14	75	20	50	36	0	5	57	1.21
27032027--27032118	44	2.0	46	87	4	134	34	30	5	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27033385--27033633	72	3.5	73	79	3	256	44	13	7	33	1.72
27033544--27033732	99	1.9	99	84	0	252	44	12	8	34	1.73
27034131--27034175	23	2.0	23	100	0	90	42	8	22	26	1.83
27035904--27035985	37	2.2	37	93	0	137	41	9	34	14	1.79
27044173--27044227	17	3.2	18	79	7	60	58	0	0	41	0.98
27044215--27044244	12	2.5	12	94	0	51	53	0	0	46	1.00
27044424--27044607	88	2.1	87	80	8	201	35	9	19	36	1.83
27047478--27047523	24	2.0	23	83	12	58	63	4	23	8	1.42
27058563--27058621	30	2.0	30	82	0	73	59	8	6	25	1.51
27060565--27060629	25	2.6	25	80	2	69	21	23	16	38	1.93
27060829--27060862	13	2.6	13	100	0	68	44	8	14	32	1.76
27063745--27063807	28	2.2	28	97	0	117	28	22	25	23	1.99
27064137--27064188	27	1.9	27	84	7	70	30	13	17	38	1.88
27064170--27064412	27	9.1	27	88	5	325	19	19	21	39	1.93
27069135--27069192	29	2.0	29	90	3	91	24	24	15	36	1.94
27070985--27071014	16	1.9	15	93	6	51	26	10	16	46	1.78
27071409--27071525	20	5.7	20	68	11	65	44	23	17	13	1.85
27071490--27071607	20	5.7	20	75	7	92	47	17	16	18	1.83
27071424--27071620	42	4.7	42	87	3	227	47	20	14	17	1.82
27071618--27071678	24	2.5	24	91	0	104	39	16	22	21	1.92
27074674--27074727	25	2.2	25	86	6	74	22	14	42	20	1.88
27085652--27085694	17	2.5	17	96	0	77	16	27	13	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27089166--27089194	12	2.3	13	94	5	51	65	6	6	20	1.40
27091677--27092436	47	16.1	47	95	2	1124	27	30	9	32	1.89
27093700--27093878	85	2.1	85	98	0	349	26	27	8	37	1.85
27096296--27096474	85	2.1	85	98	0	349	26	27	8	37	1.85
27099066--27099114	20	2.5	20	76	6	55	36	8	10	44	1.68
27101191--27101313	61	2.0	61	98	0	237	46	17	4	32	1.66
27106599--27106651	25	2.1	25	100	0	106	30	20	0	49	1.50
27112514--27112564	25	2.0	25	96	0	93	29	25	11	33	1.91
27116466--27116647	50	3.7	50	88	3	246	26	19	29	23	1.98
27116466--27116706	50	4.9	49	82	5	236	27	19	29	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189