genome.fa.s20.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  131  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37788260--37788380	57	2.1	58	85	1	163	28	20	5	45	1.74
37803398--37803622	40	5.7	40	81	6	224	25	28	20	25	1.99
37808791--37808923	66	2.0	66	85	2	178	27	15	13	43	1.84
37810851--37810884	16	2.1	16	100	0	68	11	11	17	58	1.62
37817608--37817640	9	3.7	9	92	8	50	36	21	12	30	1.90
37817835--37817947	39	2.9	39	92	1	183	18	2	26	52	1.59
37827751--37827825	36	2.1	36	95	2	134	77	5	9	8	1.12
37837158--37837190	12	2.5	13	90	9	50	75	3	0	21	0.93
37837584--37837666	37	2.2	37	87	4	114	36	26	15	21	1.94
37839852--37839931	29	2.6	30	76	11	72	38	25	16	20	1.92
37840362--37840495	51	2.5	53	84	3	146	26	22	14	36	1.92
37842645--37842826	51	3.6	51	82	2	215	22	15	29	31	1.95
37843050--37843081	16	2.0	16	93	0	55	59	0	15	25	1.36
37848020--37848284	104	2.6	103	94	1	458	30	29	20	20	1.98
37848184--37848366	77	2.4	76	87	4	260	34	27	17	20	1.95
37848692--37848756	30	2.2	29	81	8	76	30	27	6	35	1.81
37848699--37848756	30	1.9	30	85	0	80	31	24	6	37	1.82
37851488--37851552	32	2.0	32	100	0	130	27	18	15	38	1.91
37852217--37852297	26	3.2	26	67	28	73	22	12	30	34	1.91
37852153--37852303	51	3.0	51	82	7	198	22	15	30	31	1.95
37852521--37852552	16	2.0	16	93	0	55	59	0	15	25	1.36
37859427--37859491	28	2.3	28	75	2	67	30	24	9	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37859527--37859592	27	2.4	27	73	9	64	31	25	18	24	1.97
37859581--37860057	27	17.7	27	80	4	444	26	23	15	34	1.95
37859582--37860057	81	5.9	81	81	4	498	26	23	15	34	1.94
37864898--37864935	20	1.9	20	89	10	60	42	21	10	26	1.85
37878754--37878797	14	3.0	14	80	9	52	61	2	20	15	1.45
37879097--37879345	50	4.9	50	77	5	200	23	27	20	28	1.99
37890024--37891329	435	3.0	435	97	0	2423	32	22	13	31	1.93
37894617--37894790	50	3.5	50	90	0	258	20	29	22	27	1.98
37898600--37898679	27	3.0	27	83	3	99	22	27	13	36	1.92
37898717--37899009	27	10.9	27	82	4	288	25	23	17	33	1.96
37898717--37899009	81	3.6	80	81	3	329	25	23	17	33	1.96
37901310--37901458	35	4.2	35	85	0	163	16	12	32	39	1.85
37905357--37905390	17	2.0	17	94	0	59	55	0	8	35	1.31
37905407--37905494	24	3.8	22	75	12	79	65	5	3	25	1.30
37911731--37911950	104	2.1	104	88	5	322	34	12	23	29	1.92
37920453--37920496	23	1.9	23	90	9	72	34	0	20	45	1.51
37923202--37923280	25	3.3	25	61	10	65	32	5	29	32	1.79
37923155--37923522	47	7.7	47	93	1	576	32	8	29	29	1.87
37923641--37923719	37	2.1	37	85	0	104	26	18	29	25	1.98
37925352--37925421	33	2.1	33	91	0	113	12	12	34	40	1.82
37925369--37925440	33	2.2	33	82	0	81	15	15	33	36	1.89
37929661--37929725	27	2.4	27	78	0	67	18	10	3	67	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37938002--37938034	15	2.2	15	94	0	57	72	0	0	27	0.85
37938167--37938215	25	2.0	25	100	0	98	40	10	8	40	1.69
37938249--37938464	106	2.0	107	81	2	256	40	9	10	39	1.72
37938589--37938622	2	17.0	2	100	0	68	50	0	0	50	1.00
37939491--37939576	33	2.6	31	77	10	82	67	2	2	27	1.15
37939488--37939577	40	2.2	40	82	5	101	68	2	2	26	1.12
37939705--37939750	23	1.9	24	86	8	67	23	4	4	67	1.27
37941753--37941828	23	3.3	23	90	0	125	31	25	21	22	1.98
37943199--37943332	59	2.2	60	82	5	155	53	1	2	42	1.22
37943251--37943291	15	2.7	15	88	3	55	43	0	0	56	0.99
37943228--37943340	60	1.9	61	89	5	178	53	0	0	45	1.06
37950002--37950045	19	2.3	18	82	17	54	47	0	34	18	1.49
37964192--37964262	29	2.4	29	80	4	79	46	12	15	25	1.81
37965151--37965198	16	3.1	16	79	11	55	43	0	10	45	1.38
37965799--37965914	35	3.3	35	88	0	169	18	13	32	35	1.90
37966131--37966252	60	2.0	60	96	0	226	36	8	12	43	1.72
37969866--37969903	20	1.9	20	88	0	58	47	0	7	44	1.32
37974025--37974148	57	2.2	58	84	7	155	45	6	20	28	1.75
38001178--38001407	27	8.6	27	89	0	327	44	20	16	17	1.86
38016724--38016776	6	8.8	6	93	0	70	60	0	22	16	1.36
38016724--38016776	18	2.9	18	88	0	79	60	0	22	16	1.36
38023133--38023623	252	1.9	252	89	1	752	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38028870--38028992	28	4.4	28	90	2	176	33	28	12	26	1.92
38032979--38033244	104	2.6	103	93	1	453	18	20	30	30	1.96
38039896--38040163	104	2.6	105	93	1	450	18	20	30	29	1.97
38060651--38060701	26	2.0	26	96	0	93	11	23	35	29	1.90
38060573--38060795	103	2.2	104	92	2	369	17	18	31	31	1.95
38060714--38060865	71	2.1	72	92	1	252	23	17	29	30	1.97
38070718--38070809	25	3.7	25	73	11	73	29	23	22	23	1.99
38073759--38074040	51	5.6	51	76	8	247	28	14	27	29	1.95
38073755--38074034	100	2.8	101	89	2	402	28	14	27	29	1.95
38074237--38074309	37	1.9	38	86	2	103	42	2	23	31	1.68
38092239--38092271	17	1.9	17	93	0	57	42	0	6	51	1.26
38099832--38099861	15	1.9	16	93	6	53	43	0	0	56	0.99
38099797--38100039	130	1.9	130	79	10	282	39	4	5	49	1.47
38101966--38101992	12	2.2	12	100	0	54	22	14	11	51	1.73
38113715--38113848	45	3.0	45	84	6	182	25	20	14	39	1.90
38115332--38115380	24	2.0	24	100	0	98	20	8	14	57	1.63
38119065--38119128	13	4.9	13	77	7	76	37	23	7	31	1.83
38120778--38120817	5	8.0	5	100	0	80	60	0	0	40	0.97
38122260--38122320	30	2.0	31	87	3	88	34	0	44	21	1.53
38122370--38122406	9	4.1	9	85	0	56	29	8	13	48	1.71
38132046--38132223	61	2.9	59	70	10	155	42	1	3	51	1.30
38132138--38132196	26	2.3	25	85	8	82	40	0	1	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38132151--38132206	15	4.0	15	73	17	57	44	0	0	55	0.99
38132061--38132246	41	4.6	40	68	23	122	41	2	3	52	1.31
38132199--38132242	17	2.6	17	83	16	56	40	4	2	52	1.34
38132404--38132508	44	2.5	40	76	15	113	30	29	5	34	1.81
38132402--38132511	45	2.6	43	80	8	120	30	29	6	33	1.82
38132492--38132543	16	3.2	16	88	0	77	34	34	0	30	1.58
38138886--38138947	31	2.0	31	96	0	115	40	9	6	43	1.63
38140615--38140658	19	2.3	19	84	7	54	40	4	18	36	1.71
38141199--38141277	27	2.9	27	94	0	140	39	22	20	17	1.92
38141447--38141498	26	2.0	26	92	0	86	23	19	21	36	1.95
38147880--38147921	19	2.2	19	86	4	57	40	2	19	38	1.64
38148204--38148276	33	2.2	34	78	14	80	31	20	21	26	1.98
38148406--38148455	26	1.9	26	87	0	73	34	18	24	24	1.96
38152319--38152374	28	2.0	28	100	0	112	35	10	14	39	1.81
38152770--38152842	25	2.9	25	85	0	83	34	23	20	21	1.97
38152798--38152854	25	2.3	25	87	0	87	38	17	22	21	1.93
38162294--38162388	33	3.0	30	76	20	88	30	24	21	24	1.99
38162316--38162373	28	2.1	28	96	3	109	32	25	20	20	1.97
38162484--38162534	26	2.0	26	92	0	84	35	27	21	15	1.94
38163949--38163985	17	2.2	17	90	9	58	48	18	16	16	1.81
38170174--38170208	17	2.1	17	88	0	52	40	0	14	45	1.45
38180365--38180421	16	3.5	15	77	13	60	10	10	1	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38181402--38181448	25	1.9	24	86	4	67	25	8	2	63	1.34
38186738--38187061	143	2.3	143	85	1	425	31	20	21	26	1.98
38187760--38187785	12	2.2	12	100	0	52	15	0	0	84	0.62
38187760--38187807	17	3.0	16	84	6	53	14	6	0	79	0.92
38190584--38190642	19	3.1	19	92	2	91	42	3	5	49	1.41
38195027--38195057	13	2.4	13	94	0	53	19	19	12	48	1.81
38195623--38195655	11	3.1	11	86	4	50	48	9	21	21	1.77
38197845--38197893	25	2.0	25	88	8	73	44	2	6	46	1.39
38203619--38203648	15	2.0	15	93	0	51	16	13	0	70	1.18
38206453--38206742	29	9.9	29	74	9	185	23	26	12	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189