genome.fa.s20.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  125  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35677807--35677855	21	2.3	21	82	3	53	59	4	12	24	1.50
35679968--35680054	41	2.1	41	93	0	147	26	25	22	25	2.00
35682376--35682489	56	2.0	57	84	3	149	42	9	18	29	1.82
35685258--35685321	32	1.9	34	81	6	78	37	4	10	46	1.60
35691023--35691070	25	1.9	25	86	0	69	35	8	4	52	1.51
35694182--35694218	14	2.7	14	88	12	51	59	0	2	37	1.12
35694207--35694277	26	3.0	24	77	16	76	60	1	14	23	1.42
35695046--35695094	19	2.5	21	71	15	52	26	0	10	63	1.26
35699624--35699801	27	6.6	27	74	6	119	28	16	26	29	1.97
35699621--35699801	82	2.2	81	81	4	204	28	16	25	29	1.97
35707631--35707808	27	6.6	27	74	6	119	28	16	26	29	1.97
35707628--35707808	82	2.2	81	81	4	204	28	16	25	29	1.97
35715233--35715296	26	2.5	26	89	0	92	21	28	23	26	1.99
35726096--35726134	20	2.0	20	90	10	62	15	23	5	56	1.59
35727870--35728094	51	4.4	50	81	6	231	29	25	14	30	1.95
35727902--35728094	101	1.9	101	86	5	273	29	24	16	30	1.96
35730566--35730625	30	2.0	31	86	3	86	40	0	40	20	1.52
35730898--35730928	9	3.4	9	90	0	53	38	22	12	25	1.90
35734213--35734342	28	4.6	27	74	8	66	26	20	20	32	1.97
35734237--35734312	28	2.7	28	83	0	89	28	21	22	27	1.99
35736199--35736244	23	2.0	24	82	4	58	45	2	30	21	1.64
35741271--35741295	10	2.5	10	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35741661--35741687	12	2.2	12	100	0	54	48	0	18	33	1.49
35745287--35745332	19	2.4	20	78	10	60	45	2	2	50	1.26
35746338--35746386	23	2.1	23	85	7	64	48	12	0	38	1.41
35747124--35747164	16	2.6	16	80	3	57	34	0	0	65	0.93
35747151--35747198	19	2.6	18	78	21	55	33	0	2	64	1.05
35747124--35747204	16	4.7	18	74	7	55	33	0	1	65	1.01
35748020--35748050	16	2.0	15	93	6	53	54	0	6	38	1.26
35748902--35748964	29	2.1	31	85	8	94	44	14	26	14	1.83
35748957--35749030	30	2.5	30	81	0	85	40	12	21	25	1.88
35756599--35756673	29	2.5	28	79	10	80	42	13	25	18	1.87
35756651--35756755	30	3.5	30	78	0	75	37	12	20	29	1.90
35769979--35770071	49	1.9	48	93	2	159	25	24	7	41	1.81
35771833--35771884	25	2.0	27	85	7	72	48	13	0	38	1.43
35775165--35775230	20	3.6	17	77	18	71	77	1	15	6	1.04
35775710--35775836	61	2.1	61	88	2	184	38	15	14	30	1.88
35778377--35778523	57	2.6	57	83	9	183	45	12	16	25	1.83
35778879--35778913	17	1.9	19	88	11	56	25	2	5	65	1.28
35783912--35783955	24	1.9	24	90	9	74	36	0	2	61	1.09
35784052--35784079	9	3.1	9	100	0	56	57	10	0	32	1.33
35784022--35784222	59	3.1	68	83	13	289	45	8	4	40	1.57
35784211--35784252	16	2.6	16	92	0	66	42	7	2	47	1.43
35784226--35784287	23	2.7	23	82	2	72	48	1	1	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35789836--35789957	22	5.3	22	64	21	70	24	29	12	33	1.92
35789808--35790500	47	14.6	47	94	1	921	28	29	9	32	1.88
35791775--35791945	85	2.0	85	98	0	333	27	26	7	38	1.83
35796015--35796053	19	2.1	19	85	9	53	69	0	20	10	1.17
35800283--35800344	24	2.6	24	86	0	88	35	30	6	27	1.82
35802110--35802171	26	2.4	26	91	0	97	43	14	9	32	1.78
35802110--35802185	26	2.9	26	86	0	89	40	11	15	31	1.84
35808166--35808195	16	1.9	16	93	6	53	30	0	20	50	1.49
35811048--35811077	15	2.0	15	93	0	51	30	10	26	33	1.89
35830936--35831003	34	2.0	34	100	0	136	26	35	8	29	1.87
35831049--35831081	15	2.2	15	100	0	66	18	15	24	42	1.88
35836516--35836578	21	3.2	20	74	24	55	42	19	1	36	1.61
35836589--35836620	15	2.0	17	88	11	50	31	18	6	43	1.75
35837686--35837718	13	2.5	13	100	0	66	39	12	12	36	1.80
35856005--35856083	25	3.2	25	90	0	131	31	17	20	30	1.96
35860006--35860194	50	3.6	53	75	11	158	27	20	28	23	1.99
35860447--35860495	20	2.5	20	78	15	57	55	6	26	12	1.60
35869542--35869607	29	2.3	28	84	2	87	22	34	21	21	1.96
35871515--35871556	21	1.9	23	90	9	70	30	11	14	42	1.81
35872001--35872095	47	2.0	47	97	0	181	37	11	15	34	1.84
35881481--35881548	20	3.2	21	77	6	75	13	32	22	32	1.92
35893912--35894047	70	1.9	70	96	0	254	27	15	16	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35898491--35898537	20	2.3	20	85	10	60	29	19	12	38	1.89
35899234--35899258	13	1.9	13	100	0	50	40	0	12	48	1.40
35899395--35899428	18	1.9	17	88	5	50	61	0	8	29	1.26
35900810--35900860	21	2.5	19	77	20	57	39	1	1	56	1.22
35900801--35900860	23	2.6	22	78	17	68	38	3	1	56	1.26
35900867--35900910	21	2.1	21	82	0	52	29	6	0	63	1.20
35903164--35903239	30	2.9	24	79	20	98	56	5	3	34	1.40
35903278--35903337	29	2.1	29	84	12	79	71	1	1	25	1.04
35904228--35904271	18	2.4	19	85	11	56	34	0	9	56	1.31
35904772--35904824	20	2.6	20	85	8	63	58	5	1	33	1.32
35904777--35904832	19	2.9	19	82	12	62	51	5	1	41	1.35
35909359--35909424	25	2.5	27	74	13	66	56	3	1	39	1.24
35914710--35914738	9	3.0	10	90	10	51	58	0	20	20	1.39
35914996--35915085	26	3.5	26	93	0	144	36	8	21	33	1.84
35919284--35919318	18	1.9	18	88	0	52	25	25	0	48	1.51
35933006--35933044	20	2.0	20	85	10	53	69	0	2	28	1.02
35933181--35933221	13	3.1	14	82	10	50	53	2	0	43	1.13
35934571--35934618	10	4.9	10	76	2	53	66	2	6	25	1.26
35936602--35936652	21	2.4	21	83	6	59	76	1	1	19	0.98
35936603--35936651	26	1.9	25	91	4	80	77	0	2	20	0.87
35936603--35936652	5	9.6	5	79	16	57	78	0	2	20	0.86
35940104--35940139	15	2.5	14	86	8	54	44	8	0	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35942324--35942352	6	4.8	6	100	0	58	65	17	0	17	1.27
35942392--35942459	9	7.6	9	94	0	109	23	10	26	39	1.87
35954002--35954034	13	2.5	13	95	0	57	42	0	0	57	0.98
35954000--35954057	26	2.2	25	79	8	62	50	0	1	48	1.11
35954309--35954347	19	2.0	20	90	10	62	46	0	0	53	1.00
35955804--35955845	20	2.1	20	100	0	84	50	0	0	50	1.00
35958082--35958114	16	2.1	16	94	0	57	45	0	15	39	1.46
35958805--35958865	20	3.3	20	69	21	69	60	0	31	8	1.26
35977348--35977464	20	5.9	20	68	13	89	11	29	20	39	1.87
35989529--35989599	26	2.7	27	82	4	83	45	4	16	33	1.67
35993837--35994016	95	1.9	95	85	4	247	21	22	18	37	1.94
35997252--35997299	16	3.2	16	76	23	52	39	0	8	52	1.32
36002339--36002376	16	2.3	16	90	4	58	42	2	0	55	1.14
36004261--36004294	17	1.9	18	94	5	61	23	0	0	76	0.79
36004359--36004415	23	2.5	22	77	8	69	47	1	8	42	1.45
36006476--36006516	20	2.0	20	100	0	82	43	36	14	4	1.67
36007107--36007201	47	2.0	47	91	4	156	32	18	6	42	1.76
36011334--36011362	13	2.1	14	93	6	51	62	10	6	20	1.50
36012334--36012469	68	2.0	68	100	0	272	33	7	19	39	1.79
36021736--36021912	26	6.8	26	82	1	192	27	22	10	39	1.86
36021736--36021911	53	3.4	53	82	5	180	27	22	10	39	1.86
36024517--36024586	33	2.1	35	79	15	85	41	1	4	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36027086--36027138	17	3.1	16	76	10	52	26	7	16	49	1.73
36059960--36060131	88	2.0	88	96	0	317	23	19	27	29	1.98
36062389--36062471	3	27.7	3	95	0	148	0	31	0	68	0.90
36082382--36082562	25	7.6	25	69	10	119	44	20	17	17	1.87
36082411--36082593	22	7.9	22	70	13	98	46	20	16	15	1.84
36082356--36082584	94	2.4	94	82	5	291	44	21	17	15	1.86
36082387--36082584	47	4.2	47	86	2	272	44	21	17	16	1.87
36084968--36085021	27	2.0	27	100	0	108	33	7	22	37	1.82
36087599--36087660	29	2.2	29	88	8	92	54	0	25	19	1.44
36088437--36088505	21	3.4	21	76	15	90	34	5	13	46	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189