genome.fa.s20.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  170  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50508321--50508366	18	2.6	18	80	10	58	43	0	2	54	1.12
50508370--50508418	21	2.3	21	85	0	62	51	0	2	46	1.12
50511567--50511627	6	10.2	6	94	0	86	9	0	22	67	1.20
50511567--50511627	12	5.1	12	95	0	95	9	0	22	67	1.20
50511567--50511627	18	3.4	18	93	0	95	9	0	22	67	1.20
50516569--50516606	18	2.1	19	85	5	51	47	15	13	23	1.81
50523112--50523256	41	3.5	41	90	1	220	28	17	28	24	1.98
50524296--50524334	20	1.9	21	89	5	62	69	0	5	25	1.09
50525093--50525338	19	13.2	19	69	17	101	63	3	2	30	1.26
50525081--50525327	9	27.0	9	70	14	116	61	3	2	31	1.27
50525160--50525316	48	3.3	49	76	11	125	60	4	3	31	1.32
50525254--50525326	29	2.5	28	82	10	85	63	1	4	31	1.22
50525787--50525841	18	2.8	19	78	10	58	34	1	1	61	1.17
50525740--50525885	56	2.7	53	77	13	136	34	2	3	59	1.26
50525787--50525855	18	3.6	18	75	14	50	33	1	2	62	1.19
50525786--50525873	20	4.8	19	70	22	57	32	2	3	61	1.25
50525787--50525873	38	2.4	36	81	12	90	33	2	2	62	1.21
50525787--50525890	36	2.9	35	72	13	86	34	1	1	61	1.18
50526839--50526967	65	2.0	65	93	0	222	26	14	16	42	1.86
50527798--50527844	6	8.0	6	92	2	78	29	0	2	68	1.02
50531856--50531907	20	2.5	21	73	20	54	48	0	7	44	1.31
50537423--50537452	7	4.3	7	100	0	60	30	56	13	0	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50538708--50538736	13	2.2	13	100	0	58	58	0	0	41	0.98
50538744--50538800	28	2.0	28	86	3	78	29	3	1	64	1.20
50543098--50543696	44	13.8	44	69	9	210	27	22	20	29	1.98
50543052--50543571	173	3.0	173	88	0	745	28	21	19	30	1.98
50543725--50543865	51	2.8	49	79	4	147	28	26	13	31	1.94
50543975--50544121	51	2.9	51	79	1	170	25	24	20	29	1.99
50543720--50544327	260	2.3	261	86	1	835	28	24	16	31	1.96
50544149--50544404	87	2.8	90	79	5	257	30	21	17	30	1.96
50544248--50544405	51	3.2	50	74	8	162	29	22	17	30	1.96
50544711--50544773	24	2.6	24	82	0	81	30	23	7	38	1.84
50550136--50550190	23	2.4	23	81	6	58	36	3	7	52	1.47
50562908--50563093	41	4.5	41	89	1	257	24	21	23	30	1.99
50562908--50563094	82	2.3	82	89	1	286	25	21	23	29	1.99
50566047--50566160	21	5.4	21	69	8	70	45	15	21	17	1.85
50566032--50566120	42	2.1	42	85	0	124	47	19	21	12	1.82
50566004--50566144	42	3.4	42	77	4	115	45	17	21	16	1.85
50573461--50573506	18	2.6	18	96	0	83	15	17	17	50	1.79
50583036--50583069	16	2.1	16	94	0	59	11	35	0	52	1.38
50585171--50585210	20	2.0	20	85	0	53	50	15	10	25	1.74
50591320--50591364	4	11.0	4	90	4	72	73	2	22	2	1.05
50591921--50591972	16	3.2	16	94	0	86	28	0	36	34	1.58
50591953--50592062	45	2.6	43	80	9	129	33	5	29	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50596292--50596324	16	2.1	16	94	0	57	6	0	48	45	1.27
50596929--50596978	17	2.7	20	78	18	70	10	0	44	46	1.37
50601567--50601616	17	2.7	20	78	18	70	10	0	44	46	1.37
50602404--50602437	17	2.0	17	94	0	59	44	50	0	5	1.26
50607043--50607076	17	2.0	17	94	0	59	44	50	0	5	1.26
50608949--50609087	59	2.3	60	88	3	201	35	13	22	28	1.92
50609743--50609785	22	2.0	22	95	0	77	30	11	9	48	1.71
50610884--50611146	89	3.0	89	84	3	325	26	6	9	57	1.55
50614205--50614239	17	2.1	17	88	0	52	42	0	0	57	0.99
50614371--50614466	40	2.4	42	83	10	112	25	26	25	23	2.00
50614604--50614636	17	1.9	17	93	0	57	18	12	3	66	1.36
50614951--50614984	17	2.0	17	94	0	59	32	11	2	52	1.53
50614914--50614982	28	2.5	28	74	9	68	28	10	4	56	1.51
50614594--50615549	272	3.6	268	90	3	1421	24	11	3	59	1.49
50615086--50615124	17	2.3	17	90	0	60	28	12	0	58	1.34
50614594--50615549	137	7.1	133	87	4	1334	24	11	3	59	1.49
50615335--50615371	17	2.2	17	100	0	74	10	10	5	72	1.25
50615407--50615451	16	2.6	16	86	10	54	20	13	2	64	1.38
50616093--50616184	6	15.7	6	82	6	109	34	15	2	47	1.57
50626352--50626389	18	2.1	19	85	5	51	34	0	5	60	1.19
50626409--50626454	22	2.1	22	84	8	58	47	2	2	47	1.26
50626753--50626791	14	2.9	14	81	11	55	41	20	5	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50629782--50629859	30	2.8	28	71	22	81	23	3	8	64	1.39
50634632--50634667	15	2.4	15	90	0	54	5	22	41	30	1.76
50636141--50636257	35	3.3	35	82	1	135	16	11	30	41	1.83
50637668--50638157	250	2.0	250	85	4	675	26	31	13	28	1.94
50641812--50641986	50	3.4	50	82	4	152	28	29	17	25	1.98
50655627--50655670	22	2.0	22	82	8	54	45	9	15	29	1.77
50667571--50667691	50	2.6	43	74	17	107	34	14	20	29	1.93
50667584--50667691	50	2.1	51	86	5	148	35	14	21	28	1.93
50691246--50691301	28	2.0	28	82	0	67	60	3	1	33	1.24
50691262--50691399	39	3.5	39	86	7	206	60	0	2	36	1.09
50691284--50691391	11	10.4	11	73	21	90	60	0	2	37	1.12
50691262--50691400	42	3.5	40	87	6	210	61	0	2	36	1.08
50691335--50691411	31	2.5	31	97	2	147	59	0	2	37	1.11
50691335--50691422	31	2.9	31	90	5	101	60	0	2	37	1.10
50696811--50696882	28	2.5	29	74	19	71	34	5	5	54	1.47
50701810--50702008	108	1.9	106	81	8	242	23	18	10	47	1.80
50702898--50703294	46	8.6	46	88	0	587	26	15	24	32	1.96
50703296--50703570	132	2.1	132	84	4	367	30	20	25	23	1.98
50709868--50709919	9	5.6	9	82	17	70	25	7	28	38	1.83
50709868--50709918	18	2.7	20	87	9	79	25	7	29	37	1.84
50717584--50717832	69	3.6	68	83	4	277	43	24	6	25	1.78
50717584--50717832	138	1.8	138	81	5	315	43	24	6	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50724712--50724745	17	1.9	18	88	5	52	35	23	0	41	1.55
50725350--50725419	28	2.3	32	80	14	94	50	5	1	42	1.35
50729863--50729908	18	2.6	18	96	0	83	39	23	26	10	1.88
50731833--50731869	18	2.1	18	90	5	58	32	13	0	54	1.40
50733073--50733125	23	2.3	23	80	3	72	20	28	32	18	1.97
50736499--50736548	16	3.1	16	72	16	50	34	2	6	58	1.34
50736564--50736608	3	15.0	3	100	0	90	33	0	0	66	0.92
50738043--50738104	26	2.4	26	94	0	106	35	17	25	20	1.95
50739038--50739133	10	9.7	10	69	18	67	60	0	4	35	1.16
50739034--50739076	18	2.2	20	84	8	63	60	0	0	39	0.97
50739036--50739095	30	1.9	32	90	6	97	58	0	3	38	1.15
50739070--50739146	30	2.6	30	78	12	79	61	0	6	32	1.22
50739083--50739153	29	2.4	30	80	13	78	61	0	5	32	1.19
50744980--50745201	111	2.0	111	100	0	444	33	11	15	39	1.83
50745534--50745610	23	3.2	23	63	20	57	40	3	10	45	1.57
50745531--50745606	22	3.2	22	63	20	53	36	3	10	48	1.56
50745790--50745829	20	2.0	20	90	0	62	50	12	10	27	1.72
50745778--50745844	34	1.9	35	87	3	100	46	11	8	32	1.72
50759070--50759111	16	2.7	15	79	13	50	26	23	9	40	1.85
50775643--50775684	16	2.7	15	79	17	50	40	9	23	26	1.85
50786445--50786535	27	3.1	30	81	10	107	42	7	23	26	1.80
50791098--50791188	27	3.1	30	84	10	125	42	6	24	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50794794--50794843	25	2.0	25	84	11	66	20	8	16	56	1.65
50795315--50795439	51	2.5	50	84	5	146	31	22	15	31	1.95
50800406--50800444	20	2.0	21	90	10	64	53	10	12	23	1.69
50804215--50804243	13	2.3	13	94	5	51	72	3	0	24	1.00
50814516--50814561	16	2.8	17	83	6	58	41	4	0	54	1.20
50815105--50815143	14	2.8	14	84	0	51	35	12	23	28	1.91
50815714--50815749	18	1.9	18	88	5	54	58	2	0	38	1.13
50816167--50816376	70	3.0	70	99	0	413	49	10	2	37	1.51
50836378--50836457	18	4.4	18	69	16	58	35	1	2	61	1.18
50837621--50837671	20	2.5	20	96	0	93	39	5	23	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189