genome.fa.s20.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  186  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55556735--55556792	30	1.9	30	85	0	80	31	22	6	39	1.80
55559117--55559262	41	3.6	41	92	5	226	29	25	19	26	1.98
55559117--55559283	41	4.1	40	89	8	182	29	24	18	27	1.98
55561876--55561942	7	9.7	7	73	3	64	55	26	1	16	1.50
55561897--55561975	21	3.8	20	71	3	59	50	31	2	15	1.57
55561883--55561936	28	1.9	28	84	0	72	53	27	1	16	1.53
55561880--55561990	48	2.3	48	81	6	118	50	29	2	17	1.59
55568994--55569026	11	3.1	11	82	8	50	15	27	6	51	1.66
55569453--55569536	34	2.5	34	94	1	143	35	39	9	15	1.80
55569453--55569548	34	2.8	33	86	7	124	36	36	10	16	1.83
55572470--55572511	3	14.0	3	100	0	84	33	0	0	66	0.92
55577758--55577811	27	2.0	27	100	0	108	14	3	25	55	1.56
55585124--55585164	20	2.1	20	86	13	59	60	4	2	31	1.30
55588040--55588140	42	2.4	42	79	0	112	23	26	26	22	2.00
55593318--55593376	21	2.8	21	86	2	82	16	28	18	35	1.93
55600163--55600202	21	1.9	21	89	0	62	17	10	5	67	1.37
55618448--55618515	27	2.6	27	80	2	75	30	16	20	32	1.94
55638059--55638156	46	2.1	46	84	3	135	35	8	26	29	1.85
55642871--55642913	13	3.2	13	80	9	50	72	2	0	25	0.97
55642871--55642909	18	2.2	19	86	9	55	71	2	0	25	0.98
55643388--55643462	22	3.4	21	77	17	73	73	1	4	21	1.07
55643387--55643467	42	2.0	42	83	11	105	74	1	3	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55643989--55644044	21	2.8	19	82	10	76	37	16	8	37	1.80
55644000--55644043	21	2.1	21	100	0	88	38	13	9	38	1.77
55645836--55645952	49	2.2	54	77	14	145	45	10	3	41	1.55
55645849--55645953	49	2.1	50	87	1	149	46	10	3	39	1.56
55648363--55648401	15	2.5	16	79	8	53	30	0	0	69	0.89
55649872--55649999	26	4.9	25	74	13	89	57	2	3	37	1.28
55649888--55649998	17	6.4	17	67	22	70	56	1	1	39	1.20
55649952--55650053	37	2.8	37	71	10	93	59	1	2	35	1.23
55654860--55654911	25	2.1	24	89	3	77	25	26	15	32	1.95
55654914--55654962	25	2.0	25	87	0	71	30	20	18	30	1.96
55655132--55655191	31	1.9	31	83	6	77	41	1	18	38	1.60
55658510--55658581	30	2.4	30	90	6	112	26	25	5	43	1.76
55659121--55659222	32	3.2	32	80	8	102	66	1	31	0	1.03
55659147--55659221	25	3.1	25	80	3	73	62	1	36	0	1.04
55661967--55662048	29	2.8	29	83	12	96	52	3	0	43	1.18
55662021--55662099	40	2.0	38	80	9	88	51	5	5	37	1.46
55663454--55663529	26	2.8	25	78	13	71	72	3	1	22	1.09
55667592--55667644	22	2.4	23	75	12	67	50	0	0	49	1.00
55670527--55670586	31	1.9	32	89	3	95	46	5	11	36	1.62
55671604--55671640	6	6.2	6	100	0	74	35	32	16	16	1.91
55671604--55671647	18	2.4	18	92	0	61	34	34	15	15	1.90
55676468--55676523	24	2.4	22	78	18	60	57	5	3	33	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55677634--55677683	17	2.7	19	76	17	52	58	6	6	30	1.46
55683929--55684352	106	4.0	105	88	3	609	34	16	16	31	1.92
55684380--55684424	20	2.2	21	84	11	58	57	6	11	24	1.57
55684694--55684780	42	2.1	40	83	8	104	52	1	9	36	1.41
55686532--55686650	42	2.8	42	83	2	139	27	23	20	28	1.99
55686433--55686778	176	1.9	179	81	5	416	29	21	18	30	1.97
55686751--55686950	41	4.7	41	70	10	132	27	21	21	30	1.98
55686606--55686965	130	2.7	128	80	8	388	27	20	19	32	1.97
55687046--55687377	44	7.5	44	65	14	146	24	27	19	28	1.99
55686980--55687479	132	3.8	132	87	3	686	26	24	20	28	1.99
55688548--55688584	9	4.1	9	92	0	65	29	10	13	45	1.77
55688638--55688668	9	3.4	9	90	0	53	38	22	12	25	1.90
55689275--55689332	24	2.4	24	82	5	73	36	24	6	32	1.82
55689870--55690040	57	3.1	57	63	24	141	47	10	16	25	1.78
55689791--55690117	106	3.1	106	93	0	546	49	9	15	24	1.75
55690377--55690426	20	2.5	20	83	0	64	0	22	2	76	0.89
55690388--55690425	20	2.0	20	94	5	69	0	13	2	84	0.73
55695036--55695395	106	3.4	107	87	3	521	33	16	17	33	1.92
55695505--55695544	4	9.2	4	86	13	53	70	2	5	22	1.19
55695505--55695577	22	3.4	21	74	18	53	72	2	5	19	1.16
55695547--55695601	19	2.9	18	79	12	58	70	0	3	25	1.03
55695587--55695630	23	2.0	22	90	4	70	56	2	6	34	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55695786--55695817	12	2.7	12	95	0	55	65	9	0	25	1.22
55711279--55711311	17	1.9	17	88	11	50	33	0	0	66	0.92
55714946--55714976	4	8.0	4	92	7	55	51	0	0	48	1.00
55716508--55716600	39	2.5	37	80	7	98	27	29	22	20	1.98
55716956--55716982	3	9.0	3	100	0	54	66	0	0	33	0.92
55717710--55717766	5	11.0	5	78	14	62	56	1	0	42	1.10
55717709--55717764	12	4.5	12	81	16	69	55	1	0	42	1.10
55717711--55717766	26	2.2	26	90	6	69	55	1	0	42	1.10
55720140--55720212	36	2.0	36	91	0	119	28	30	9	31	1.89
55732319--55732382	27	2.4	27	87	12	96	50	15	3	31	1.60
55735843--55735888	17	2.8	18	84	15	64	28	41	30	0	1.56
55736551--55736599	21	2.3	21	86	6	64	61	4	0	34	1.15
55736584--55736634	25	2.0	26	85	11	70	47	3	1	47	1.32
55739361--55739595	105	2.2	105	90	5	361	18	20	29	31	1.96
55739545--55739622	27	2.9	27	98	0	147	15	25	30	28	1.96
55739572--55739758	103	1.8	103	94	0	329	18	21	31	28	1.97
55743233--55743263	16	1.9	16	100	0	62	64	0	16	19	1.29
55744055--55744088	16	2.1	16	88	0	50	41	2	20	35	1.68
55745862--55745898	9	4.1	9	89	0	56	45	10	10	32	1.74
55746021--55746055	14	2.5	14	90	0	52	20	60	5	14	1.54
55746677--55746940	72	3.7	72	81	2	332	32	14	17	35	1.90
55746677--55746940	144	1.8	144	91	0	438	32	14	17	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55751279--55751440	44	3.7	44	79	3	166	24	20	18	36	1.95
55753722--55753917	76	2.6	76	96	0	356	11	19	20	47	1.80
55754960--55754999	20	2.0	20	100	0	80	35	10	30	25	1.88
55757485--55757577	32	2.9	32	96	0	168	25	3	19	51	1.62
55757440--55757579	59	2.3	62	81	8	171	25	2	19	52	1.60
55758826--55758863	20	1.9	20	94	0	67	50	0	2	47	1.15
55758946--55758992	20	2.3	20	88	0	76	46	12	10	29	1.76
55761248--55761291	18	2.4	18	96	0	79	65	2	18	13	1.36
55771707--55771750	20	2.2	20	95	0	79	27	13	20	38	1.90
55772924--55772962	19	2.1	19	95	0	69	61	0	20	17	1.34
55774205--55774237	12	2.8	12	90	0	57	69	0	3	27	1.03
55793713--55793759	22	2.0	22	88	8	67	57	4	2	36	1.30
55798240--55798291	24	2.2	24	85	0	68	53	9	3	32	1.51
55802712--55802875	82	2.0	82	95	0	292	26	23	18	31	1.97
55804339--55804388	25	2.0	25	96	0	91	34	32	30	4	1.76
55811376--55811413	17	2.2	17	100	0	76	26	28	5	39	1.78
55814870--55815186	73	4.3	73	88	1	447	29	18	26	25	1.98
55815203--55815679	187	2.5	188	84	3	611	26	19	26	27	1.99
55815101--55815417	114	2.8	113	85	3	431	27	20	26	25	1.99
55815336--55815476	73	1.9	73	92	0	237	26	20	27	24	1.99
55815317--55815490	73	2.4	73	82	5	235	27	19	27	25	1.99
55815390--55815609	114	1.9	116	88	5	340	25	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55815463--55815543	41	2.0	41	85	2	108	25	17	27	29	1.97
55815504--55815752	73	3.4	74	83	3	299	26	19	26	27	1.99
55815931--55815984	14	3.9	14	77	0	63	24	0	27	48	1.52
55815994--55816046	22	2.4	21	81	6	61	22	0	28	49	1.50
55815994--55816122	21	6.2	21	69	14	70	20	0	32	46	1.56
55816413--55816453	21	2.0	21	90	9	66	21	0	46	31	1.52
55816730--55816803	30	2.5	29	82	10	96	51	2	4	41	1.35
55816751--55816787	19	1.9	19	88	0	56	51	2	2	43	1.30
55816735--55816788	10	5.3	10	76	10	56	57	1	1	38	1.20
55817251--55817389	68	2.0	69	94	2	244	38	12	9	39	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189