genome.fa.s20.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  136  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39559334--39559380	23	2.1	23	84	7	62	51	12	4	31	1.59
39567798--39567886	44	2.0	44	100	0	178	38	11	26	23	1.89
39572300--39572344	20	2.2	20	85	14	58	28	0	13	57	1.36
39573261--39573318	23	2.5	23	83	5	73	32	31	3	32	1.75
41151957--41151997	11	3.6	11	96	3	73	78	7	0	14	0.96
41151957--41152000	12	3.8	12	93	6	81	75	6	0	18	1.02
41151957--41152000	23	1.9	23	100	0	88	75	6	0	18	1.02
41155688--41155736	12	4.1	12	89	10	82	73	8	0	18	1.07
41155691--41155733	11	3.7	11	93	6	68	79	6	0	13	0.93
41155690--41155734	13	3.6	13	88	11	76	80	6	0	13	0.91
41155776--41155822	13	3.6	13	85	8	69	63	2	12	21	1.39
41163609--41163648	18	2.2	18	86	4	53	12	27	0	60	1.33
41164703--41164749	13	3.5	14	94	5	80	19	8	0	72	1.10
41164703--41164752	12	3.9	12	85	12	64	22	10	0	68	1.19
41164788--41164823	13	2.8	13	100	0	72	16	0	5	77	0.94
41170816--41170916	52	1.9	52	93	0	175	33	21	17	26	1.96
41175917--41175995	37	2.1	37	88	0	113	25	31	20	22	1.98
41176114--41176387	47	5.8	47	95	0	467	29	29	8	33	1.86
41183001--41183042	12	3.6	12	93	6	77	14	0	7	78	0.95
41183002--41183052	10	4.7	11	90	9	79	13	0	7	78	0.96
41183001--41183052	11	4.7	11	85	7	70	13	0	7	78	0.94
41182999--41183052	12	4.8	12	81	9	60	14	0	7	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41200570--41200616	25	1.9	24	82	4	58	53	10	17	19	1.72
41217136--41217179	23	2.0	21	86	8	61	45	9	20	25	1.80
41219457--41219496	18	2.2	18	86	4	53	12	27	0	60	1.33
41220546--41220582	14	2.6	14	95	4	65	16	5	0	78	0.93
41220545--41220584	13	2.9	14	89	10	64	20	7	0	72	1.08
41227827--41227857	15	2.1	15	93	0	53	35	9	9	45	1.70
41228915--41228941	11	2.5	11	100	0	54	22	7	18	51	1.70
41230325--41230531	91	2.3	91	88	1	299	45	3	3	47	1.37
41230671--41230722	15	3.6	15	80	12	56	44	0	1	53	1.11
41230546--41230838	119	2.5	120	92	5	481	42	2	5	49	1.37
41230755--41230796	16	2.5	16	81	18	50	50	2	4	42	1.36
41230795--41230836	15	2.7	16	82	14	52	45	0	2	52	1.13
41230773--41230827	15	3.7	15	77	18	53	47	0	1	50	1.11
41230774--41231042	147	1.9	143	92	4	459	46	2	3	46	1.35
41230929--41230963	18	2.0	17	88	5	52	45	0	0	54	0.99
41231123--41231217	45	2.1	44	86	1	127	33	27	7	31	1.84
41231198--41231265	16	4.2	16	94	0	100	32	36	1	29	1.67
41235067--41235100	10	3.3	11	88	12	54	14	8	5	70	1.31
41248109--41248333	40	5.7	40	84	5	242	25	26	22	25	2.00
41249461--41249580	56	2.1	56	96	0	222	22	23	8	45	1.79
41260952--41260982	16	1.9	16	93	0	53	29	16	6	48	1.70
41264250--41264304	15	3.8	14	76	7	56	72	3	21	1	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41265473--41265566	46	2.0	46	93	4	163	35	22	18	24	1.96
41280967--41281021	25	2.2	25	83	9	67	69	1	23	5	1.19
41280954--41281008	12	4.4	12	78	17	51	72	1	21	3	1.09
41281793--41281892	50	2.0	50	100	0	200	24	24	30	22	1.99
41285173--41285211	18	2.2	17	82	13	51	5	17	2	74	1.12
41298878--41298916	18	2.2	18	90	9	62	71	0	20	7	1.10
41300668--41300742	33	2.2	34	95	2	134	37	5	13	44	1.66
41303458--41303504	23	2.1	23	84	7	62	51	12	4	31	1.59
41311200--41311265	32	2.1	32	94	0	114	27	19	19	33	1.96
41314193--41314258	32	2.1	32	97	0	123	27	21	19	31	1.97
41314365--41314402	16	2.4	16	86	0	58	68	7	10	13	1.39
41316756--41316819	23	2.8	22	74	23	60	10	21	1	65	1.32
41324946--41324992	16	2.6	19	90	9	73	74	0	21	4	0.99
41335059--41335093	12	2.9	12	95	0	61	68	2	8	20	1.29
41336106--41336180	12	6.2	12	70	11	64	69	4	16	10	1.32
41336167--41336221	25	2.2	26	81	12	62	63	0	23	12	1.29
41342749--41342849	52	1.9	52	91	0	166	26	16	21	34	1.95
41343053--41343211	79	2.0	79	98	0	309	55	23	3	17	1.56
41349106--41349206	52	1.9	52	93	0	175	26	17	21	33	1.96
41349410--41349564	79	2.0	79	100	0	310	54	21	3	20	1.60
41351363--41351401	12	3.2	13	85	7	55	66	15	5	12	1.41
41351442--41351491	14	3.5	15	91	8	86	72	0	10	18	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41351437--41351491	29	2.0	29	92	7	96	65	0	12	21	1.26
41390850--41390904	14	3.6	15	90	9	85	60	5	12	21	1.53
41390852--41390904	17	3.3	17	84	10	67	62	5	11	20	1.49
41407675--41407898	104	2.2	104	94	1	387	17	19	32	31	1.95
41407817--41407968	71	2.1	72	92	1	252	23	17	29	30	1.97
41415875--41416097	39	5.7	40	82	8	242	25	27	21	25	1.99
41416029--41416106	40	1.9	41	82	10	97	26	28	20	24	1.99
41423779--41424000	40	5.7	40	81	8	233	25	27	21	25	1.99
41423779--41424000	79	2.8	79	81	7	247	25	27	21	25	1.99
41423932--41424009	40	1.9	41	82	10	97	26	28	20	24	1.99
41426592--41426711	56	2.1	56	96	0	222	44	9	24	22	1.82
41429674--41429793	56	2.1	56	98	0	231	45	9	23	22	1.81
41433302--41434042	47	15.6	47	94	1	1212	33	8	29	29	1.86
41442876--41442943	20	3.4	20	83	0	91	25	32	19	23	1.97
41450728--41450761	11	3.2	11	83	8	52	23	32	14	29	1.94
41453797--41453826	15	1.9	16	93	6	53	63	0	20	16	1.31
41457232--41457265	11	3.2	11	83	8	52	23	32	14	29	1.94
41458153--41458181	14	2.0	15	93	6	51	55	0	17	27	1.42
41459279--41459313	6	5.8	6	96	0	61	34	2	48	14	1.58
41465721--41465773	23	2.4	22	75	9	54	9	20	1	67	1.28
41465825--41465863	18	2.2	18	90	9	62	5	20	2	71	1.17
41471655--41471687	11	3.0	11	83	16	50	39	15	18	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41479288--41479326	19	2.1	19	90	0	60	30	10	12	46	1.75
41483103--41483169	20	3.3	20	89	4	100	28	17	29	23	1.97
41485684--41485747	20	3.2	20	86	4	76	34	15	26	23	1.95
41488541--41488624	40	2.1	41	88	2	125	44	14	11	29	1.81
41497211--41497536	162	2.0	162	91	1	528	17	21	21	39	1.92
41504303--41504347	21	2.1	21	84	8	56	51	11	4	33	1.58
41509869--41510192	162	2.0	162	90	1	506	19	21	20	38	1.93
41510687--41510735	18	2.7	18	90	0	80	71	4	18	6	1.23
41510687--41510765	6	12.8	6	72	5	59	70	3	20	5	1.22
41510765--41510799	18	1.9	18	88	11	54	57	0	17	25	1.40
41516432--41516503	30	2.4	30	80	0	81	27	34	6	30	1.83
41520907--41520943	18	1.9	18	89	10	56	70	5	21	2	1.20
41520907--41520954	21	2.3	20	83	16	55	68	6	22	2	1.23
41520993--41521038	18	2.5	19	75	10	51	63	0	23	13	1.30
41522697--41522760	33	1.9	33	90	0	101	39	9	10	40	1.73
41536123--41536212	46	2.0	46	88	4	137	34	21	20	24	1.96
41538895--41538934	18	2.2	18	86	4	53	12	27	0	60	1.33
41540407--41540500	46	2.0	46	89	4	145	32	22	19	25	1.97
41554903--41554944	17	2.5	17	88	0	57	21	4	0	73	1.01
41559007--41559084	40	2.0	40	84	0	102	30	10	15	43	1.80
41560381--41560422	17	2.4	18	92	4	68	54	4	26	14	1.59
41571768--41571810	6	7.2	6	86	0	50	51	9	0	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41575373--41575415	21	2.0	21	82	8	52	23	20	4	51	1.66
41576459--41576554	39	2.5	39	81	6	117	28	28	23	19	1.99
41576904--41576946	6	7.2	6	86	0	50	51	9	0	39	1.34
41578245--41578305	24	2.5	23	80	15	61	49	4	0	45	1.23
41578253--41578332	35	2.4	34	85	8	101	50	5	0	45	1.23
41584935--41585012	39	2.0	39	89	0	120	29	34	6	29	1.82
41586245--41586298	27	2.0	28	85	3	74	51	12	7	27	1.66
41587499--41587525	14	1.9	14	100	0	54	33	22	14	29	1.94
41589783--41589827	12	3.8	12	82	2	56	15	20	2	62	1.43
41589811--41589850	18	2.3	18	91	4	64	7	17	5	70	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189