genome.fa.s20.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  166  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49637978--49638031	21	2.6	21	82	5	74	29	25	22	22	1.99
49640857--49640973	47	2.3	51	77	15	134	28	14	24	32	1.95
49647737--49647785	16	2.9	17	69	6	55	40	2	10	46	1.49
49647893--49648000	53	2.0	53	85	7	148	26	12	25	34	1.93
49647967--49648098	46	2.8	47	89	2	203	28	13	25	31	1.94
49647965--49648114	46	3.2	47	84	4	189	30	13	24	32	1.93
49647967--49648146	93	1.9	94	81	8	215	27	13	27	32	1.94
49647967--49648147	46	3.9	47	83	5	188	27	13	27	32	1.94
49667117--49667159	22	1.9	22	85	4	59	62	4	0	32	1.15
49669044--49669169	41	3.1	41	88	2	182	25	22	21	30	1.98
49669045--49669170	40	3.1	40	87	3	173	24	23	21	30	1.99
49669224--49669361	40	3.5	39	78	11	131	40	21	18	19	1.91
49669401--49669677	41	6.8	41	92	1	387	20	20	24	34	1.97
49670249--49670280	15	2.1	15	94	0	55	25	0	34	40	1.56
49670258--49670295	14	2.7	15	84	12	53	26	2	28	42	1.69
49670935--49670968	15	2.3	15	89	0	50	61	0	0	38	0.96
49671011--49671078	21	3.2	21	75	10	66	23	0	39	36	1.55
49671380--49671408	4	7.2	4	100	0	58	75	0	0	24	0.80
49674540--49674577	15	2.4	17	86	8	53	28	0	2	68	1.03
49675264--49675320	27	2.2	26	81	9	62	28	7	0	64	1.19
49675503--49675611	43	2.5	42	71	10	94	23	14	30	31	1.95
49675694--49675737	22	2.0	22	90	0	70	45	27	18	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49675992--49676029	15	2.5	15	91	0	58	26	2	2	68	1.16
49679057--49679124	8	8.8	8	74	6	50	70	13	4	11	1.30
49679087--49679117	12	2.6	12	89	0	53	74	19	0	6	1.03
49680929--49681079	40	3.7	40	83	6	205	25	20	24	29	1.99
49680929--49681088	82	2.0	82	92	0	266	25	19	24	31	1.98
49681148--49681579	50	8.6	50	67	3	229	25	21	22	30	1.99
49681148--49681643	100	4.9	100	84	2	600	25	21	22	30	1.99
49681559--49681666	50	2.2	50	84	0	135	24	24	25	25	2.00
49681947--49682004	24	2.4	24	85	0	80	31	24	10	34	1.89
49683363--49683418	7	7.9	7	84	11	69	3	1	10	83	0.83
49683363--49683427	22	3.0	22	79	2	78	3	4	10	81	0.95
49683363--49683418	15	3.9	14	81	9	69	3	1	10	83	0.83
49683373--49683434	28	2.2	29	82	8	74	4	6	8	80	1.01
49683372--49683435	29	2.2	29	83	10	78	4	6	7	81	0.99
49686757--49687025	126	2.1	127	87	4	384	27	17	18	36	1.93
49687087--49687190	34	3.1	33	80	5	127	42	14	1	41	1.56
49688073--49688147	37	2.0	37	97	0	141	28	2	20	49	1.62
49688791--49689025	123	1.9	123	88	3	357	29	24	17	28	1.97
49688908--49689316	144	2.8	145	84	1	516	26	26	18	28	1.98
49689513--49689557	21	2.1	21	92	8	74	11	8	11	68	1.39
49689513--49689557	11	4.3	10	89	10	72	11	8	11	68	1.39
49693924--49693984	20	2.8	21	78	16	63	63	4	3	27	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49700741--49700780	21	2.0	21	85	5	55	42	0	12	45	1.42
49712029--49712095	25	2.7	26	82	15	79	29	10	14	44	1.79
49717612--49717842	43	5.4	44	77	5	213	33	24	14	27	1.94
49717610--49717842	86	2.7	86	81	5	249	33	25	14	27	1.95
49726281--49726342	26	2.4	26	91	0	97	38	12	12	35	1.82
49747929--49747959	15	2.1	15	93	0	53	25	29	6	38	1.81
49752255--49752285	15	2.1	15	93	0	53	25	32	6	35	1.82
49762991--49763023	15	2.1	16	88	5	50	57	12	3	27	1.49
49763504--49763680	91	1.9	91	91	0	291	31	28	15	24	1.95
49767562--49767611	25	2.0	25	100	0	100	40	20	12	28	1.87
49769816--49769861	23	2.0	24	91	4	76	23	0	2	73	0.94
49782501--49782810	47	6.6	47	90	1	476	29	30	8	32	1.87
49782501--49782810	96	3.3	96	90	3	497	29	30	8	32	1.87
49782501--49782811	143	2.2	141	90	1	478	28	30	8	32	1.87
49793435--49793548	23	5.1	23	76	8	128	22	26	6	44	1.76
49793425--49793548	42	2.8	43	81	4	142	22	25	7	45	1.78
49796163--49796211	23	2.1	23	92	0	80	20	30	4	44	1.70
49799044--49799078	17	2.1	17	88	0	52	17	2	11	68	1.31
49799124--49799160	18	2.0	19	94	5	67	37	0	0	62	0.96
49800396--49800469	32	2.5	30	82	10	91	51	17	2	28	1.59
49800431--49800483	27	2.0	27	85	7	72	52	16	3	26	1.61
49804135--49804169	17	2.1	16	89	5	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49804493--49804522	6	4.8	6	95	4	51	20	0	0	80	0.72
49807840--49807938	10	10.6	10	68	22	63	58	2	1	38	1.16
49807858--49807946	18	4.7	18	75	15	74	59	2	1	37	1.17
49807921--49807955	17	2.0	18	88	5	54	68	2	0	28	1.04
49810686--49811237	307	1.8	298	82	5	705	34	22	11	31	1.89
49811979--49812023	22	2.0	22	83	8	56	75	0	2	22	0.91
49811977--49812041	33	2.0	32	82	14	80	70	0	3	26	1.01
49813634--49813705	37	1.9	37	97	0	135	20	11	16	51	1.75
49815432--49815466	12	2.9	12	95	0	61	20	17	11	51	1.75
49815435--49815466	6	5.3	6	92	0	55	18	15	12	53	1.73
49816026--49816066	19	2.2	19	95	0	73	48	19	9	21	1.77
49823489--49823517	10	2.7	11	94	5	51	31	24	10	34	1.89
49825151--49825185	18	1.9	17	88	11	52	62	2	5	28	1.32
49825174--49825202	12	2.5	12	94	5	51	75	0	6	17	1.01
49825183--49825221	16	2.5	16	95	4	71	74	0	10	15	1.07
49826112--49826151	18	2.4	16	87	8	53	62	0	25	12	1.30
49830038--49830076	20	2.0	20	85	10	53	25	2	12	58	1.47
49845151--49845547	23	17.0	23	71	11	234	40	16	13	28	1.87
49845109--49845550	187	2.3	188	89	3	656	40	16	13	29	1.87
49845151--49845540	70	5.6	68	72	12	252	40	16	13	28	1.87
49845151--49845550	93	4.3	93	91	1	647	40	16	13	29	1.87
49846274--49846396	28	4.5	28	81	8	146	30	26	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49849008--49849153	50	2.9	50	81	4	177	22	28	22	26	1.99
49849540--49849597	29	2.0	30	86	3	82	31	25	5	37	1.78
49851607--49851655	23	2.1	24	81	11	57	14	10	10	65	1.47
49851911--49851936	5	5.2	5	100	0	52	19	0	0	80	0.71
49851913--49851969	29	1.9	30	85	3	80	19	0	5	75	0.99
49851918--49851972	24	2.3	24	81	6	58	18	0	7	74	1.04
49855861--49855895	14	2.5	14	90	0	52	17	2	8	71	1.23
49857467--49857506	21	2.0	20	90	5	62	15	0	5	80	0.88
49857475--49857511	14	2.7	14	80	19	51	13	0	8	78	0.96
49860849--49860884	19	1.9	18	88	5	54	41	19	8	30	1.81
49861928--49862037	49	2.3	48	82	6	132	24	30	20	23	1.98
49864648--49864681	17	1.9	18	94	5	61	32	11	0	55	1.36
49865711--49865740	5	5.8	5	92	7	51	16	0	0	83	0.65
49865711--49865740	11	2.8	11	95	5	53	16	0	0	83	0.65
49865710--49865740	16	1.9	16	100	0	62	16	0	0	83	0.64
49867942--49867985	17	2.4	19	85	7	56	47	9	2	40	1.48
49877002--49877062	29	2.1	29	81	6	70	42	3	26	27	1.71
49878985--49879327	50	6.8	50	90	1	517	26	22	30	21	1.99
49890065--49890093	14	2.1	14	100	0	58	24	20	27	27	1.99
49899770--49899821	24	2.2	24	85	0	68	38	1	7	51	1.42
49901377--49901440	31	2.0	31	82	11	76	25	12	17	45	1.83
49904186--49904241	28	2.0	29	82	3	69	53	1	1	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49905584--49905622	3	13.0	3	88	0	60	33	0	5	61	1.18
49905584--49905618	15	2.3	15	100	0	70	34	0	5	60	1.21
49905975--49906070	39	2.5	39	80	6	108	20	23	28	27	1.99
49912052--49912132	24	3.4	24	77	13	87	49	0	1	49	1.08
49912068--49912106	11	3.4	11	80	13	51	51	0	2	46	1.14
49912051--49912131	15	5.2	15	71	21	60	48	0	1	50	1.08
49912086--49912124	14	2.5	16	88	12	55	46	0	0	53	1.00
49913460--49913500	3	14.0	3	84	5	57	34	0	2	63	1.08
49913643--49913711	27	2.7	27	80	13	74	40	0	26	33	1.56
49913856--49913951	39	2.5	39	80	6	108	20	23	28	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189