genome.fa.s20.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  86  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23825951--23825987	16	2.3	16	95	0	65	35	5	35	24	1.78
23825967--23826063	44	2.2	44	87	5	133	29	5	29	35	1.79
23826221--23826260	16	2.4	17	84	15	57	57	0	0	42	0.98
23826241--23826431	61	3.2	61	72	11	212	51	4	1	42	1.29
23826316--23826356	13	3.2	12	80	12	55	58	0	0	41	0.98
23826302--23826490	59	3.2	59	73	11	213	55	3	0	41	1.20
23826206--23826493	120	2.4	120	94	0	504	52	3	1	43	1.26
23829969--23830211	50	4.8	50	91	1	371	20	32	22	24	1.98
23832467--23832651	50	3.7	50	87	0	262	21	31	22	24	1.98
23833935--23833998	4	17.5	4	73	15	50	18	1	4	75	1.06
23833972--23834008	14	2.9	13	88	11	51	18	0	8	72	1.08
23835661--23835711	12	4.2	12	80	7	50	13	0	9	76	1.02
23835651--23835699	18	2.8	18	90	3	73	12	2	6	79	0.99
23835661--23835711	18	2.8	18	80	16	61	13	0	9	76	1.02
23835651--23835733	41	2.0	42	83	6	107	14	1	10	73	1.15
23835676--23835744	22	3.3	22	75	18	67	15	0	13	71	1.16
23839961--23840012	3	17.0	3	80	11	61	32	1	1	63	1.16
23840491--23840516	12	2.2	12	100	0	52	42	0	7	50	1.31
23843875--23843940	25	2.6	25	88	9	89	21	15	4	59	1.54
23846931--23847068	44	3.1	44	68	12	129	31	21	23	23	1.98
23846896--23847772	88	10.0	88	91	0	1299	27	23	25	23	2.00
23847760--23848001	132	1.8	132	85	0	340	30	18	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23849382--23849423	3	14.0	3	85	9	59	30	0	2	66	1.04
23849669--23849731	32	2.0	30	84	6	81	34	0	4	60	1.18
23849686--23849729	22	2.0	21	82	4	52	34	0	6	59	1.24
23853285--23853388	49	2.1	49	89	0	154	28	7	11	51	1.65
23854789--23855104	120	2.6	120	96	0	587	43	1	4	49	1.34
23855191--23855224	16	2.1	16	94	0	59	38	0	0	61	0.96
23855215--23855331	16	7.2	16	69	12	60	47	0	3	49	1.18
23855159--23855328	81	2.1	81	95	3	308	47	1	2	48	1.24
23855089--23855449	199	1.8	201	93	1	636	44	1	4	49	1.31
23855239--23855622	120	3.2	120	95	0	698	44	1	5	48	1.34
23855540--23855695	73	2.1	73	96	0	285	44	3	6	46	1.45
23855895--23855941	16	2.9	16	96	0	85	27	34	0	38	1.57
23859973--23860065	29	3.1	30	93	3	152	40	6	25	26	1.80
23864633--23864725	29	3.1	30	93	3	152	40	6	25	26	1.80
23865553--23865601	7	7.1	7	77	13	57	14	46	0	38	1.44
23867958--23868004	23	2.0	23	100	0	94	21	21	8	48	1.76
23868307--23868341	15	2.4	15	90	4	54	48	0	8	42	1.33
23870445--23870489	23	2.0	23	86	8	65	22	0	2	75	0.91
23871447--23871480	9	3.7	9	92	4	50	35	0	5	58	1.22
23872944--23873037	37	2.5	35	80	14	100	30	23	1	44	1.60
23873720--23873759	6	6.7	6	94	0	71	0	17	0	82	0.67
23873828--23873862	17	2.0	18	88	5	54	14	8	5	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23873816--23873875	23	2.8	21	82	10	59	13	8	3	75	1.16
23874587--23874644	25	2.4	24	85	8	73	39	15	5	39	1.70
23874752--23874779	11	2.5	11	100	0	56	42	0	0	57	0.99
23878606--23878652	24	2.0	24	88	8	71	53	0	2	44	1.12
23884439--23884663	40	5.7	40	80	8	226	25	27	21	25	1.99
23884406--23884663	40	6.5	38	78	11	202	24	27	21	26	1.99
23884595--23884672	40	1.9	41	82	10	97	26	28	20	24	1.99
23892369--23892593	40	5.7	40	81	6	224	24	28	21	25	1.99
23892336--23892593	40	6.5	38	78	9	200	24	27	21	26	1.99
23892525--23892602	40	1.9	41	82	10	97	26	28	20	24	1.99
23894463--23894532	6	11.7	6	98	0	131	34	1	15	48	1.54
23895830--23895964	61	2.2	61	85	0	180	46	7	3	42	1.49
23901010--23901037	7	4.0	7	100	0	56	42	14	14	28	1.84
23907792--23907910	59	2.0	59	96	0	220	40	4	7	47	1.51
23908310--23908529	112	2.0	113	92	0	370	31	17	12	38	1.86
23908879--23909019	67	2.1	67	87	0	201	36	18	6	38	1.76
23909163--23909215	26	2.0	26	96	0	97	35	20	20	22	1.96
23910068--23910096	6	4.8	6	100	0	58	51	0	0	48	1.00
23910444--23910493	20	2.8	17	77	16	55	20	2	8	70	1.23
23910451--23910497	20	2.5	19	80	10	60	23	2	4	70	1.16
23910444--23910493	18	2.7	18	80	14	57	20	2	8	70	1.23
23912728--23912841	15	8.0	15	75	11	87	26	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23912730--23912789	29	2.1	29	90	0	93	23	15	28	33	1.94
23912869--23913006	22	6.2	22	71	6	98	36	13	16	33	1.87
23912863--23913006	68	2.2	66	84	5	182	36	13	17	33	1.88
23927195--23927251	26	2.2	26	93	0	96	35	5	21	38	1.76
23927195--23927269	13	5.8	13	69	10	55	38	5	20	36	1.75
23927195--23927258	26	2.5	26	89	0	83	35	6	21	35	1.79
23929321--23929495	72	2.4	73	79	8	196	54	12	8	24	1.64
23929917--23929982	18	3.7	18	95	0	114	39	13	13	33	1.84
23930765--23930807	22	2.0	22	95	0	77	11	18	25	44	1.84
23930872--23930956	43	2.0	43	88	0	125	24	34	20	21	1.97
23934082--23934141	24	2.5	24	89	2	95	58	8	10	23	1.57
23935311--23935360	21	2.4	21	83	6	66	26	0	50	24	1.50
23935394--23935661	75	3.5	76	92	2	439	33	9	11	45	1.73
23935567--23935793	114	2.0	114	94	1	402	29	13	14	42	1.84
23935700--23935890	95	2.0	97	93	2	332	29	12	14	44	1.81
23936880--23937061	89	2.0	89	82	4	215	45	25	2	26	1.67
23937054--23937118	7	9.3	7	76	6	60	35	38	0	26	1.57
23937067--23937118	14	3.7	14	89	0	68	34	38	0	26	1.57
23937547--23937745	41	4.9	41	88	1	274	29	21	21	27	1.98
23938084--23938443	107	3.3	107	94	3	594	35	8	6	48	1.61
23938422--23938458	15	2.5	15	100	0	74	43	0	5	51	1.24
23940417--23940474	19	3.1	19	87	0	89	51	20	25	1	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23940449--23940524	25	3.0	25	78	0	80	47	22	22	7	1.77
23941304--23941343	18	2.2	18	86	8	55	32	0	7	60	1.25
23941302--23941344	19	2.3	18	84	4	59	32	0	6	60	1.23
23947953--23947986	17	2.0	17	94	0	59	44	14	5	35	1.70
23951352--23951393	22	1.9	22	90	0	66	16	11	50	21	1.77
23952016--23952054	20	2.0	20	85	10	53	30	2	35	30	1.71
23952548--23952590	19	2.3	19	91	0	68	48	20	2	27	1.62
23956811--23956844	18	1.9	17	88	5	50	29	14	38	17	1.90
23956975--23957072	15	6.5	15	97	0	169	20	22	34	22	1.97
23957407--23957441	11	3.3	11	88	4	54	68	22	0	8	1.16
23958636--23958692	21	2.7	21	80	2	69	57	1	0	40	1.09
23960502--23960541	21	2.0	20	85	14	55	42	0	0	57	0.98
23962122--23962159	18	2.1	18	90	9	60	42	0	21	36	1.53
23969097--23969164	26	2.7	25	80	14	86	39	25	20	14	1.91
23969608--23969649	21	2.0	21	85	0	57	38	23	0	38	1.55
23969619--23969649	10	2.9	11	90	9	55	35	29	0	35	1.58
23971684--23971715	12	2.5	13	95	5	57	21	9	0	68	1.17
23971698--23971818	58	2.1	59	79	3	138	28	16	7	47	1.74
23974640--23974697	30	1.9	30	85	0	80	43	1	24	31	1.64
23974909--23974940	13	2.5	13	94	0	55	31	0	12	56	1.37
23975035--23975276	50	4.7	50	83	4	279	26	23	28	20	1.99
23975035--23975284	100	2.4	103	86	6	355	26	23	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23981984--23982041	30	1.9	30	89	0	89	41	3	24	31	1.71
23982253--23982284	13	2.5	13	94	0	55	31	0	12	56	1.37
23982379--23982620	50	4.7	50	83	4	279	26	23	29	20	1.99
23982379--23982628	100	2.4	103	86	6	346	26	23	29	21	1.99
23983951--23984016	30	2.2	30	94	0	114	40	4	7	46	1.52
23986623--23986692	29	2.4	30	80	7	81	22	10	20	47	1.79
23986591--23986704	29	3.9	28	70	17	72	23	12	22	41	1.88
23987073--23987101	11	2.6	11	100	0	58	31	37	24	6	1.82
23994224--23994316	45	2.1	45	100	0	186	33	13	27	24	1.94
23996223--23996272	25	2.0	25	100	0	100	36	16	12	36	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189