genome.fa.s20.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  183  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54443216--54443301	41	2.1	41	95	0	154	30	12	4	52	1.60
54448420--54448464	18	2.6	17	83	13	56	57	20	4	17	1.56
54450085--54450241	77	2.0	77	100	0	314	36	22	10	30	1.88
54451423--54451455	2	16.5	2	100	0	66	51	0	0	48	1.00
54453728--54453792	30	2.2	30	91	0	103	56	13	4	24	1.56
54457003--54457070	33	2.1	32	91	2	109	33	25	13	27	1.93
54468234--54468280	22	2.0	25	88	12	73	48	4	0	46	1.21
54475847--54475943	45	2.2	45	98	0	185	55	8	12	23	1.63
54505244--54505287	9	4.9	9	88	8	63	54	0	4	40	1.21
54509841--54509926	40	2.2	40	93	0	145	12	15	26	45	1.82
54514143--54514206	15	4.1	15	80	7	56	25	15	3	56	1.54
54514169--54514208	17	2.3	18	91	4	64	20	15	2	62	1.43
54526701--54526740	14	2.9	14	84	0	53	35	7	15	42	1.75
54526724--54526763	20	2.0	20	90	0	62	30	10	10	50	1.69
54526709--54526775	34	1.9	35	87	3	100	32	8	11	46	1.72
54526862--54526900	20	2.0	20	94	0	69	48	2	0	48	1.15
54526931--54526983	17	3.2	15	80	17	52	41	1	1	54	1.22
54527155--54527194	14	2.9	14	84	0	53	32	7	17	42	1.77
54530012--54530062	18	2.8	18	75	0	66	39	1	43	15	1.58
54530300--54530337	14	2.8	14	84	4	51	68	0	31	0	0.90
54530505--54530619	60	1.9	60	92	0	194	33	0	13	53	1.46
54531170--54531210	22	1.9	22	90	5	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54534897--54534995	23	4.3	23	94	0	171	32	25	21	21	1.98
54535221--54535259	18	2.2	17	86	13	53	46	20	2	30	1.64
54537128--54537199	33	2.2	33	89	0	108	15	43	12	29	1.83
54537128--54537211	33	2.5	33	84	0	96	14	44	13	28	1.82
54551781--54551938	79	2.0	79	98	0	307	32	22	11	34	1.89
54562627--54562657	2	15.5	2	100	0	62	51	0	0	48	1.00
54562848--54562897	25	1.9	26	92	8	84	52	26	0	22	1.48
54562848--54562897	13	3.9	13	80	12	59	52	26	0	22	1.48
54565509--54565550	20	2.1	20	86	0	57	47	0	7	45	1.30
54568873--54569017	41	3.5	41	92	0	236	28	20	27	23	1.99
54571877--54571924	21	2.3	21	92	0	78	54	18	8	18	1.68
54573389--54573430	20	2.1	20	86	0	57	47	0	7	45	1.30
54583648--54583701	20	2.8	20	81	18	62	59	3	0	37	1.15
54583542--54583773	9	24.0	9	67	17	67	59	4	3	32	1.32
54583642--54583769	19	6.6	18	72	17	71	57	5	2	34	1.34
54590818--54590843	7	3.7	7	100	0	52	61	0	0	38	0.96
54594082--54594130	24	2.0	24	84	7	64	30	16	20	32	1.94
54597918--54597993	23	3.3	23	96	0	143	31	26	21	21	1.98
54598080--54598108	8	3.6	8	100	0	58	34	27	13	24	1.93
54598213--54598251	18	2.2	17	86	13	53	46	20	0	33	1.51
54605254--54605329	23	3.3	23	96	0	143	31	26	21	21	1.98
54605416--54605444	8	3.6	8	100	0	58	34	27	13	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54605549--54605587	18	2.2	17	86	13	53	46	20	0	33	1.51
54606870--54606912	18	2.4	18	92	0	68	9	32	44	13	1.76
54609432--54609472	14	2.8	15	75	20	50	24	2	2	70	1.11
54613083--54613165	33	2.5	33	76	7	87	26	18	18	37	1.93
54617575--54617669	40	2.3	40	87	3	127	0	27	7	65	1.19
54620080--54620112	14	2.4	14	90	5	50	21	0	0	78	0.75
54622010--54622034	8	3.1	8	100	0	50	24	0	0	76	0.80
54635027--54635059	15	2.2	15	89	10	50	66	6	0	27	1.15
54652284--54652323	21	1.9	21	85	10	55	45	2	0	52	1.14
54652510--54652558	24	2.0	24	84	8	62	32	6	2	59	1.34
54653209--54653263	19	2.9	19	81	7	60	43	1	0	54	1.10
54661438--54661507	24	3.0	24	79	8	72	32	5	2	58	1.36
54661451--54661586	24	5.8	24	71	14	77	36	8	2	52	1.46
54674380--54674409	12	2.5	12	100	0	60	16	6	53	23	1.66
54675785--54675825	11	3.9	11	84	12	59	80	0	19	0	0.71
54677894--54678128	50	4.7	50	91	0	371	20	30	22	25	1.98
54678104--54678149	21	2.2	21	100	0	92	23	28	19	28	1.98
54678054--54678199	71	2.1	71	98	0	283	21	31	21	26	1.98
54678302--54678332	13	2.4	13	94	0	53	54	12	0	32	1.38
54688025--54688082	30	1.9	30	89	0	89	41	3	24	31	1.71
54688294--54688325	13	2.5	13	94	0	55	31	0	12	56	1.37
54688420--54688661	50	4.7	50	86	4	297	26	24	29	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54688420--54688669	100	2.4	103	88	6	364	26	24	29	20	1.99
54692856--54692886	13	2.4	13	94	0	53	32	0	12	54	1.38
54692980--54693172	50	3.8	50	90	0	296	26	23	30	20	1.98
54700737--54701022	49	5.7	50	91	2	459	20	30	23	26	1.98
54700737--54701022	99	2.9	98	93	3	464	20	30	23	26	1.98
54701120--54701151	13	2.5	13	94	0	55	56	12	0	31	1.37
54702454--54702587	21	6.4	21	74	7	85	49	17	20	12	1.79
54706105--54706159	19	2.8	20	89	10	87	10	21	10	56	1.64
54707341--54707401	21	2.9	22	76	14	65	42	3	1	52	1.27
54707504--54707540	6	6.2	6	96	0	65	32	2	0	64	1.07
54707834--54707875	13	3.2	13	80	12	50	28	4	0	66	1.12
54709193--54709262	36	1.9	36	97	0	131	30	8	21	40	1.83
54722261--54722315	26	2.1	26	100	0	110	7	3	27	61	1.39
54726670--54726795	47	2.7	47	78	2	119	28	13	20	37	1.91
54734109--54734139	15	2.0	16	93	6	55	58	0	0	41	0.98
54739948--54739995	18	2.7	17	84	9	60	60	0	0	39	0.97
54739956--54739995	17	2.3	18	86	4	55	60	0	0	40	0.97
54771868--54771892	13	1.9	13	100	0	50	8	0	24	68	1.16
54773467--54773820	41	8.6	40	86	9	457	27	18	23	30	1.98
54773467--54773820	82	4.3	83	91	3	517	27	18	23	30	1.98
54773467--54773776	123	2.5	123	95	2	543	26	18	23	31	1.97
54773467--54773818	123	2.9	122	91	4	541	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54775179--54775208	11	2.6	11	94	5	51	60	0	3	36	1.14
54776464--54776496	17	2.0	17	88	5	50	69	0	0	30	0.88
54778962--54779151	50	3.7	50	83	4	200	30	20	23	25	1.98
54779400--54779431	12	2.7	12	95	0	55	56	6	18	18	1.62
54780992--54781034	16	2.8	15	72	6	50	39	2	2	55	1.25
54783043--54783102	31	1.9	31	86	0	84	38	11	6	43	1.68
54783749--54783785	17	2.1	18	90	5	58	67	0	0	32	0.91
54788209--54788233	13	1.9	13	100	0	50	44	0	0	56	0.99
54808006--54808058	23	2.4	22	76	20	56	9	18	1	69	1.25
54810185--54810218	18	1.9	17	88	5	50	23	29	14	32	1.94
54810868--54810926	26	2.3	27	79	8	68	32	11	15	40	1.83
54811547--54811587	2	21.5	2	85	9	59	48	0	2	48	1.14
54811547--54811587	21	2.0	21	90	0	64	48	0	2	48	1.14
54812883--54812907	6	4.2	6	100	0	50	84	0	16	0	0.63
54816407--54816478	26	2.8	26	74	18	78	34	0	2	62	1.10
54817437--54817461	7	3.6	7	100	0	50	24	0	0	76	0.80
54819058--54819104	25	1.9	25	86	4	69	51	4	4	40	1.41
54838844--54839021	61	2.9	59	71	16	150	43	1	3	51	1.28
54838936--54838994	26	2.3	25	85	8	82	40	0	1	57	1.09
54838949--54839004	15	4.0	15	73	17	57	44	0	0	55	0.99
54838975--54839043	22	3.3	22	69	22	67	43	2	0	53	1.15
54838921--54839060	17	8.6	17	67	23	61	45	1	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54839288--54839355	16	4.2	16	90	0	109	35	35	0	29	1.58
54848115--54848147	14	2.5	14	90	9	52	81	0	18	0	0.68
54848768--54848826	29	2.1	29	81	9	68	22	13	1	62	1.39
54849015--54849051	18	2.1	18	90	10	58	32	0	5	62	1.18
54852564--54852739	45	4.0	45	85	1	239	25	16	25	32	1.96
54870624--54870652	3	9.7	3	100	0	58	34	0	34	31	1.58
54876823--54877008	43	4.3	43	77	6	189	25	17	23	33	1.96
54876823--54877017	86	2.3	86	83	7	243	26	16	24	32	1.96
54879044--54879073	6	5.0	6	100	0	60	50	16	0	33	1.46
54889383--54889438	29	1.9	29	85	7	78	51	3	5	39	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189