genome.fa.s20.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  158  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47518060--47518498	64	6.9	64	90	1	632	41	14	10	33	1.81
47521447--47521492	3	15.3	3	95	0	83	67	2	0	30	1.03
47521603--47521660	19	2.8	20	78	17	66	37	0	3	58	1.15
47521604--47521660	20	2.8	21	77	20	66	36	0	3	59	1.14
47535932--47536015	43	2.0	43	87	0	123	27	16	23	32	1.96
47543689--47543756	22	3.0	23	72	20	79	36	4	13	45	1.63
47545902--47545964	30	2.1	30	93	0	108	25	3	14	57	1.52
47546047--47546084	18	2.1	18	85	9	51	21	0	13	65	1.26
47547667--47547757	41	2.2	42	86	2	121	21	20	23	34	1.97
47547691--47547825	69	2.0	68	83	4	173	20	20	22	37	1.94
47548769--47548821	19	2.7	20	74	17	56	45	5	5	43	1.51
47548966--47549035	31	2.3	31	81	13	83	48	0	5	45	1.26
47548966--47549028	32	2.0	32	84	9	85	49	0	4	46	1.23
47553850--47553915	21	3.0	21	79	16	71	30	0	42	27	1.56
47553978--47554036	30	2.0	29	90	3	91	38	0	40	20	1.53
47556542--47556598	29	1.9	30	86	10	82	26	10	7	56	1.59
47558903--47558998	47	2.0	47	93	0	165	46	12	14	26	1.80
47567537--47567565	6	4.8	6	100	0	58	17	31	0	51	1.45
47579860--47579927	27	2.5	27	92	4	111	39	10	1	48	1.46
47581424--47581463	18	2.2	18	90	0	62	25	45	0	30	1.54
47583540--47583611	30	2.5	30	70	4	76	43	4	1	51	1.29
47585186--47585240	25	2.2	25	77	6	58	34	1	5	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47588602--47588636	15	2.3	15	100	0	70	25	31	22	20	1.98
47596384--47596432	17	2.8	17	79	14	55	22	2	4	71	1.13
47598587--47598659	26	2.8	25	86	10	94	32	17	9	39	1.82
47607262--47607289	8	3.5	8	100	0	56	60	0	0	39	0.97
47617800--47617958	37	4.3	37	82	0	165	35	19	20	24	1.96
47617800--47617958	74	2.1	74	83	0	192	35	19	20	24	1.96
47628109--47628166	27	2.1	27	84	6	73	48	5	20	25	1.70
47629775--47629841	35	1.9	34	82	8	82	67	4	23	4	1.28
47636382--47636424	18	2.3	19	88	4	61	69	0	2	27	1.00
47643036--47643135	42	2.4	42	91	0	155	37	11	27	25	1.89
47645775--47645818	3	15.0	3	95	4	81	65	0	0	34	0.93
47646572--47646598	8	3.4	8	100	0	54	88	0	0	11	0.50
47647311--47647465	83	1.9	83	85	5	215	20	25	23	30	1.98
47647391--47647755	69	5.3	69	82	4	369	20	23	24	32	1.98
47650562--47650617	19	2.7	22	70	16	55	16	5	17	60	1.53
47656473--47656509	18	2.1	18	85	14	51	24	40	18	16	1.90
47660715--47660747	12	3.0	11	91	8	50	81	9	0	9	0.87
47661364--47661418	27	2.0	29	82	10	71	50	36	3	9	1.51
47665576--47666308	44	16.6	44	77	4	688	30	25	15	28	1.96
47665547--47666308	133	5.7	132	92	1	1193	30	25	15	28	1.96
47665543--47666308	265	2.9	265	91	0	1219	30	25	15	28	1.96
47667128--47667176	26	1.9	26	88	12	75	61	8	14	16	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47667430--47667555	50	2.5	50	86	3	180	10	21	19	49	1.77
47687471--47687508	17	2.2	17	86	9	51	60	0	7	31	1.25
47687643--47687693	3	17.0	3	100	0	102	66	0	0	33	0.92
47688759--47688803	22	2.0	24	91	8	76	66	8	6	17	1.40
47688828--47688887	31	2.0	30	86	3	84	53	5	10	31	1.56
47688828--47688887	30	2.0	31	83	9	79	53	5	10	31	1.56
47696336--47696533	82	2.4	82	92	0	317	27	6	15	51	1.68
47698559--47698600	17	2.5	17	84	0	57	30	0	4	64	1.14
47698568--47698606	17	2.2	18	86	9	53	28	2	2	66	1.18
47699648--47699709	3	19.7	3	74	9	52	69	1	4	24	1.17
47701484--47701653	51	3.5	50	76	12	190	31	15	18	35	1.92
47701365--47701685	96	3.4	96	80	4	312	28	17	18	35	1.94
47701936--47702205	139	1.9	139	85	3	373	30	19	15	35	1.92
47701520--47702574	89	11.4	89	72	14	487	30	20	16	33	1.94
47702023--47702516	140	3.6	134	79	9	437	30	20	15	33	1.94
47701604--47702516	44	20.0	44	71	12	436	30	19	16	33	1.94
47709176--47709228	26	2.0	27	79	17	67	73	1	3	20	1.08
47709304--47709373	4	17.5	4	90	0	104	70	2	2	24	1.15
47717838--47717877	19	2.1	19	86	9	55	40	0	7	52	1.30
47718899--47718935	15	2.4	17	82	17	53	48	0	16	35	1.46
47723253--47723287	15	2.2	16	90	5	54	5	11	0	82	0.82
47723849--47723908	3	19.3	3	77	19	61	31	1	3	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47724056--47724146	7	12.0	7	68	23	51	30	3	0	65	1.08
47724049--47724088	20	2.0	20	85	0	53	35	7	0	57	1.27
47724056--47724123	33	2.0	34	86	8	95	33	4	0	61	1.16
47724058--47724147	9	10.4	9	70	17	57	32	3	0	64	1.10
47724104--47724146	12	3.5	12	87	3	50	30	0	0	69	0.88
47728659--47728694	18	1.9	18	88	5	54	58	2	0	38	1.13
47728941--47728988	22	2.4	19	80	19	53	18	22	14	43	1.87
47730094--47730120	13	2.1	13	100	0	54	22	7	14	55	1.64
47732247--47732277	16	1.9	16	100	0	62	38	0	35	25	1.56
47732248--47732284	16	2.3	16	90	0	56	40	2	32	24	1.69
47732266--47732359	44	2.1	46	86	7	131	31	4	27	36	1.76
47732495--47732609	26	4.3	26	70	8	95	53	3	0	42	1.24
47732515--47732631	18	7.0	17	64	21	59	56	2	0	40	1.19
47735209--47735313	51	2.1	50	89	1	156	41	19	11	27	1.85
47737846--47737888	15	2.8	16	82	10	63	55	0	0	44	0.99
47737735--47738142	120	3.4	120	91	0	656	49	5	2	42	1.39
47737735--47738156	59	7.0	59	65	12	196	49	4	2	42	1.38
47737987--47738021	18	2.0	17	88	5	52	54	0	0	45	0.99
47737775--47738082	61	5.1	60	67	17	217	48	6	2	41	1.43
47738124--47738378	47	5.6	46	70	19	176	47	2	3	46	1.32
47738205--47738243	18	2.3	17	83	12	53	51	2	0	46	1.14
47738158--47738403	91	2.7	91	96	0	440	47	2	2	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47738547--47738587	20	2.0	22	90	9	68	43	0	0	56	0.99
47738643--47738688	20	2.2	22	88	7	69	45	0	0	54	0.99
47744619--47744669	25	2.0	25	100	0	102	49	11	3	35	1.58
47745294--47745325	13	2.5	13	100	0	64	31	31	6	31	1.82
47750873--47750910	19	2.0	19	100	0	76	26	5	26	42	1.76
47750921--47750959	19	2.1	19	90	0	60	30	7	10	51	1.64
47751062--47751098	10	3.8	10	92	7	67	24	0	21	54	1.45
47751062--47751098	19	1.9	19	100	0	74	24	0	21	54	1.45
47751076--47751195	64	1.9	64	92	0	204	25	5	20	48	1.70
47753739--47753951	102	2.1	104	94	3	378	48	7	3	39	1.50
47762245--47762288	11	3.9	11	82	5	52	34	0	2	63	1.07
47764831--47764883	19	2.8	18	75	18	54	41	0	13	45	1.43
47766968--47767009	17	2.5	17	77	14	50	76	2	0	21	0.90
47770564--47770632	30	2.3	30	90	5	104	34	21	20	23	1.96
47771026--47771221	53	3.7	54	86	3	236	24	19	14	41	1.89
47771807--47771872	27	2.4	26	78	9	69	27	25	22	24	2.00
47772235--47772511	27	10.3	27	84	5	303	18	19	18	43	1.88
47773861--47773954	48	2.0	48	89	4	145	40	26	13	19	1.89
47776372--47776465	48	2.0	48	85	8	129	40	27	14	17	1.89
47782007--47782031	9	2.8	9	100	0	50	24	0	8	68	1.16
47787787--47787845	29	2.0	29	96	0	109	42	10	3	44	1.55
47792005--47792236	50	4.6	50	76	8	182	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47795622--47795660	20	1.9	21	89	5	62	48	5	0	46	1.24
47809370--47809413	22	2.0	22	95	0	79	29	27	4	38	1.76
47812724--47812827	41	2.5	41	88	0	145	28	23	21	26	1.99
47813076--47813131	12	4.4	12	74	12	58	44	7	3	44	1.48
47818473--47818501	14	2.0	15	93	6	51	27	20	20	31	1.98
47820302--47820781	238	2.0	238	91	1	775	33	12	16	37	1.86
47821053--47821105	21	2.5	20	79	11	61	41	0	15	43	1.46
47825227--47825399	88	2.0	88	98	0	337	19	19	11	49	1.78
47828935--47828979	18	2.6	17	82	6	54	31	0	15	53	1.43
47837780--47837932	60	2.5	61	85	4	193	39	13	7	39	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189