genome.fa.s20.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  140  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42564760--42564883	44	2.8	45	75	8	137	31	20	22	25	1.98
42564760--42565006	88	2.8	86	79	8	234	29	23	20	26	1.99
42564804--42565004	44	4.6	44	70	10	135	28	25	20	25	1.99
42566325--42566381	3	19.3	3	92	3	98	33	1	0	64	1.04
42567164--42567205	3	13.7	3	85	5	57	26	0	2	71	0.98
42567164--42567209	22	2.1	22	91	0	74	26	0	2	71	0.97
42567163--42567202	19	2.1	19	90	0	62	25	0	2	72	0.97
42568650--42568725	6	12.5	6	78	13	75	14	2	5	77	1.05
42568925--42569292	187	2.0	187	91	0	601	28	11	15	45	1.80
42578852--42578915	21	3.0	22	80	11	62	59	0	4	35	1.18
42578875--42578922	14	3.1	17	69	25	52	62	0	2	35	1.07
42580767--42580859	25	3.7	25	86	0	96	24	26	20	27	1.99
42580802--42580862	25	2.4	25	94	0	104	24	24	21	29	1.99
42583473--42583545	9	9.5	8	79	11	50	9	8	4	78	1.09
42583473--42583536	9	7.1	9	76	16	62	10	7	3	78	1.07
42586343--42586377	17	2.0	18	88	5	54	25	14	0	60	1.35
42587623--42587662	22	1.9	21	90	10	64	57	15	7	20	1.61
42588143--42588303	32	5.1	32	84	0	198	37	19	19	22	1.94
42588143--42588303	64	2.5	64	87	3	218	37	19	19	22	1.94
42588478--42588531	24	2.2	24	90	0	81	48	24	7	20	1.75
42588577--42588829	27	9.4	27	77	6	183	21	19	18	39	1.93
42588576--42588829	54	4.7	54	76	8	203	22	19	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42588581--42588833	81	3.1	79	75	8	240	21	19	18	39	1.92
42588765--42588845	27	3.0	27	87	3	92	19	18	19	41	1.90
42592554--42592625	27	2.7	27	78	6	85	29	18	19	33	1.95
42599151--42599212	27	2.3	27	80	0	79	33	19	14	32	1.92
42600564--42600628	22	2.7	25	77	18	75	23	13	43	20	1.87
42600582--42600638	22	2.6	22	94	0	96	22	15	43	17	1.87
42604794--42604850	21	2.7	21	94	0	105	29	8	19	42	1.81
42605140--42605164	8	3.1	8	100	0	50	28	0	24	48	1.52
42605140--42605172	15	2.1	16	88	5	50	30	0	24	45	1.53
42614813--42615528	357	2.0	358	94	0	1263	27	15	19	37	1.92
42620470--42620512	22	2.0	22	86	9	61	32	18	34	13	1.90
42623396--42623524	64	2.0	64	100	0	258	39	18	20	21	1.92
42624603--42624648	22	2.1	22	83	0	56	32	21	28	17	1.96
42636140--42636186	5	9.4	5	84	6	60	17	4	2	76	1.04
42649848--42649896	25	2.0	25	95	0	89	42	12	14	30	1.82
42656336--42656365	13	2.3	13	94	0	51	50	3	0	46	1.18
42667010--42667038	12	2.3	13	94	5	51	20	6	6	65	1.40
42671589--42671720	50	2.6	50	79	4	149	25	23	28	21	1.99
42671961--42672008	20	2.5	19	77	12	53	54	2	22	20	1.55
42679125--42679308	50	3.6	50	80	5	145	27	19	28	25	1.99
42679167--42679298	50	2.6	50	85	0	165	27	22	28	21	1.99
42679181--42679360	50	3.6	49	81	3	166	27	21	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42679562--42679604	20	2.2	20	87	8	61	53	2	25	18	1.56
42680370--42680433	30	2.1	30	97	0	119	35	14	7	42	1.74
42680662--42680854	50	3.7	50	80	5	199	23	26	22	26	2.00
42683355--42683401	22	2.1	22	84	4	58	6	8	4	80	1.00
42685347--42685394	18	2.7	17	77	6	51	20	4	6	68	1.28
42685443--42685514	3	24.0	3	100	0	144	33	33	0	33	1.58
42686815--42687033	45	4.9	45	86	1	296	36	20	20	23	1.95
42686815--42687072	135	1.9	135	81	4	315	37	19	20	22	1.95
42686999--42687118	47	2.6	47	80	7	122	44	19	20	15	1.87
42693983--42694394	47	8.6	47	90	6	619	32	8	29	30	1.86
42693983--42694394	147	2.9	142	90	5	630	32	8	29	30	1.86
42707549--42707644	31	3.1	31	98	1	183	46	12	9	31	1.73
42709781--42709890	9	11.4	9	68	25	66	2	12	10	73	1.19
42709798--42709855	21	2.8	20	84	7	80	3	15	10	70	1.28
42709779--42709832	28	1.9	28	85	7	74	1	14	9	74	1.15
42709780--42709884	49	2.1	49	84	3	131	2	12	10	74	1.18
42710104--42710135	16	2.1	15	94	5	55	81	0	0	18	0.70
42710438--42710533	31	3.1	31	93	3	165	46	12	9	31	1.73
42711675--42711737	18	3.4	19	71	20	53	44	0	3	52	1.17
42713310--42713339	10	3.0	10	100	0	60	30	0	10	60	1.30
42721280--42721960	226	3.0	226	98	0	1326	31	21	20	25	1.98
42730808--42730877	6	12.0	6	83	11	76	65	1	2	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42730829--42730896	6	10.9	7	86	10	71	64	1	7	26	1.28
42730816--42730886	37	1.9	37	88	2	108	64	2	5	26	1.29
42735102--42735142	20	2.0	21	85	4	57	43	12	12	31	1.79
42739511--42740171	339	1.9	341	83	4	863	34	15	19	29	1.93
42743385--42743428	22	2.0	22	87	12	65	45	2	0	52	1.13
42743935--42743972	8	4.6	8	81	18	51	34	0	2	63	1.09
42743939--42743991	25	2.2	25	83	10	65	37	0	3	58	1.16
42743935--42743994	25	2.4	25	83	10	61	36	0	3	60	1.14
42744866--42744890	3	8.3	3	100	0	50	68	0	32	0	0.90
42750607--42750731	51	2.4	52	85	6	175	26	15	30	28	1.96
42753210--42753285	30	2.5	30	86	0	107	28	25	7	38	1.84
42753210--42753439	60	3.8	61	71	7	166	23	24	14	38	1.92
42753198--42753459	120	2.2	119	82	3	312	21	25	15	37	1.93
42753270--42753491	30	7.4	30	77	5	157	18	25	16	39	1.91
42759372--42759486	6	18.0	6	69	15	52	69	2	22	5	1.21
42759366--42759486	27	4.3	26	72	22	70	70	2	22	4	1.19
42759392--42759492	21	4.8	20	73	9	76	68	1	22	6	1.24
42763482--42763732	40	6.3	40	82	5	285	25	19	26	27	1.99
42763497--42763727	119	1.9	120	91	0	374	25	19	26	28	1.99
42779668--42779842	60	2.9	60	86	0	242	24	22	14	39	1.91
42779711--42779815	30	3.5	30	76	5	122	24	20	11	42	1.85
42789826--42789868	19	2.2	20	84	12	63	32	18	0	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42789991--42790186	51	3.9	50	74	3	187	30	28	16	23	1.97
42796322--42796529	27	7.7	27	85	4	267	41	20	14	23	1.89
42796720--42796769	26	1.9	26	91	0	82	14	26	22	38	1.91
42803994--42804027	16	2.2	15	89	5	50	44	0	0	55	0.99
42807352--42807439	45	2.0	45	95	0	158	37	9	18	35	1.82
42809544--42809570	12	2.2	12	100	0	54	33	7	18	40	1.78
42810718--42810756	15	2.8	13	82	14	51	43	5	12	38	1.65
42811011--42811175	34	4.8	34	82	2	177	21	23	16	39	1.92
42811010--42811165	69	2.3	69	89	0	231	20	22	16	40	1.91
42814476--42814690	108	2.0	106	96	3	396	17	13	22	47	1.81
42818136--42818477	29	11.8	29	78	7	302	37	12	26	23	1.90
42818136--42818476	58	5.9	56	82	7	353	37	12	26	23	1.90
42818152--42818476	87	3.7	87	79	8	358	37	12	26	23	1.90
42818591--42818629	20	2.0	20	100	0	78	38	5	20	35	1.75
42819665--42819868	99	2.1	99	88	0	309	26	14	19	39	1.90
42822032--42822209	30	6.0	30	75	7	141	21	27	13	37	1.91
42822170--42822227	30	1.9	30	92	0	98	20	25	15	37	1.92
42824455--42824725	138	2.0	137	89	2	418	28	16	15	39	1.89
42836199--42836233	18	1.9	18	94	0	61	48	8	14	28	1.73
42838304--42838430	60	2.1	60	85	2	166	20	22	21	36	1.95
42850441--42850598	63	2.5	63	86	0	217	23	25	17	32	1.97
42853184--42853288	27	3.9	27	88	5	160	46	21	16	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42859934--42859958	12	2.1	12	100	0	50	44	16	8	32	1.76
42861958--42861996	18	2.2	18	90	9	62	71	2	20	5	1.17
42863767--42863838	33	2.1	34	89	2	110	40	6	12	40	1.70
42864927--42864951	12	2.1	12	100	0	50	44	16	8	32	1.76
42866906--42867080	27	6.5	27	86	3	228	41	18	20	19	1.90
42868446--42868471	12	2.2	12	100	0	52	15	15	0	69	1.20
42869427--42869679	27	9.4	27	81	3	253	43	19	15	21	1.88
42870039--42870184	28	5.2	29	81	7	176	24	23	21	30	1.99
42870039--42870184	56	2.6	56	85	0	202	24	23	21	30	1.99
42877192--42877248	16	3.6	16	71	19	57	29	15	7	47	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189