genome.fa.s20.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  111  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31043273--31043554	41	6.9	40	83	5	305	28	30	21	19	1.98
31043274--31043489	81	2.6	81	89	2	315	28	33	21	16	1.95
31043273--31043513	122	2.0	123	88	2	360	28	32	21	17	1.96
31043273--31043554	81	3.4	81	83	2	305	28	30	21	19	1.98
31043232--31043556	41	8.0	41	82	4	153	29	28	21	21	1.98
31043639--31043725	39	2.2	40	80	12	99	22	24	18	34	1.96
31049229--31049336	44	2.5	44	81	3	128	26	20	22	30	1.98
31049545--31049650	50	2.1	49	81	5	122	28	24	21	25	1.99
31062281--31062332	3	17.3	3	80	7	61	61	1	1	34	1.18
31062993--31063039	17	2.6	19	80	12	55	6	21	8	63	1.44
31065654--31065694	20	2.0	21	86	13	59	21	0	19	58	1.39
31066264--31066318	17	3.2	16	75	10	56	41	0	3	54	1.18
31067652--31067776	32	3.9	33	76	11	134	37	16	22	24	1.93
31067946--31068004	24	2.5	24	82	0	64	45	16	8	28	1.77
31067970--31068056	24	3.6	24	82	0	102	43	20	6	28	1.78
31068127--31068217	27	3.4	27	86	1	130	27	21	17	32	1.96
31069430--31069467	16	2.5	15	87	8	51	60	0	0	39	0.97
31071474--31071516	21	2.0	21	95	0	77	39	11	2	46	1.53
31074907--31074938	16	2.1	16	88	11	50	40	0	9	50	1.35
31074383--31075187	399	2.0	398	95	0	1448	39	7	8	44	1.63
31076238--31076376	32	4.4	32	84	4	165	38	17	21	22	1.94
31076546--31076676	24	5.5	23	81	8	97	44	22	7	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31076745--31076841	27	3.6	27	83	1	115	30	20	15	32	1.94
31080897--31080946	17	2.9	17	90	0	82	42	6	26	26	1.78
31085947--31085985	14	2.6	16	88	8	55	30	5	20	43	1.73
31095029--31095067	19	2.0	21	85	10	55	69	5	10	15	1.34
31095270--31095324	19	2.7	21	83	11	87	36	10	10	41	1.75
31095247--31095312	23	3.0	22	75	20	66	37	15	7	39	1.75
31095855--31097474	132	12.3	132	89	0	2469	25	24	18	31	1.98
31095855--31097474	395	4.1	396	92	1	2599	25	24	18	31	1.98
31095855--31097478	527	3.1	528	89	1	2490	25	24	19	31	1.98
31101233--31101283	20	2.6	19	75	9	57	17	3	35	43	1.68
31105047--31105210	23	7.2	23	74	6	138	16	2	35	45	1.61
31108230--31108508	27	10.3	27	87	1	353	43	18	19	17	1.88
31108697--31108792	25	3.8	25	84	6	113	13	18	23	43	1.86
31109132--31109180	21	2.4	21	93	3	82	42	12	2	42	1.53
31111408--31111515	5	21.6	5	68	23	50	58	4	4	32	1.39
31113471--31113515	21	2.2	21	88	4	65	40	11	4	44	1.60
31128882--31128924	21	2.0	21	95	0	77	41	11	0	46	1.40
31132751--31132793	21	2.0	21	95	0	77	39	11	2	46	1.53
31133953--31134001	21	2.3	22	80	16	59	22	0	20	57	1.41
31134475--31134670	23	8.5	23	73	8	150	19	4	34	42	1.70
31134551--31134670	22	5.3	22	77	7	107	20	4	34	41	1.71
31140966--31141015	17	2.9	17	75	19	50	58	0	12	30	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31142742--31142778	18	2.1	18	94	0	65	45	8	10	35	1.69
31142982--31143041	30	2.0	31	86	3	86	20	40	0	40	1.52
31143297--31143325	9	3.2	9	100	0	58	31	0	0	68	0.89
31143460--31143494	18	1.9	18	88	11	54	40	5	0	54	1.24
31146957--31147005	26	1.9	25	88	12	73	42	6	2	48	1.39
31148340--31148386	15	3.1	15	79	8	51	59	2	2	36	1.21
31152842--31152967	32	3.9	32	85	4	164	37	19	22	21	1.94
31152978--31153037	26	2.3	26	94	0	111	41	26	16	15	1.88
31153110--31153240	24	5.5	23	81	8	106	44	24	6	24	1.78
31153323--31153386	27	2.4	27	86	0	83	26	21	15	35	1.94
31153735--31153777	17	2.4	17	80	7	50	20	44	20	13	1.86
31155739--31155772	9	4.0	9	85	14	54	55	0	0	44	0.99
31157586--31157623	19	2.0	19	100	0	76	52	15	5	26	1.64
31162700--31162743	22	2.0	22	82	8	54	34	2	2	61	1.21
31164720--31164768	23	2.1	23	85	7	64	48	2	0	48	1.12
31166239--31166285	19	2.3	21	82	10	62	21	0	19	59	1.38
31166241--31166283	20	2.2	20	87	4	61	20	0	18	60	1.36
31166749--31166954	22	9.1	22	70	12	125	19	2	33	43	1.66
31166745--31166950	91	2.3	91	83	4	254	20	2	33	43	1.67
31171082--31171236	21	7.0	21	72	13	98	17	2	34	45	1.62
31171088--31171247	22	7.2	23	72	11	111	16	2	35	45	1.62
31174651--31174791	31	4.4	32	73	19	93	38	19	23	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31174811--31174861	25	2.0	27	92	7	88	39	25	19	15	1.91
31174955--31175015	24	2.6	23	80	15	70	45	26	4	22	1.72
31179367--31179403	17	2.1	18	95	5	67	48	18	5	27	1.70
31184419--31184468	25	2.0	24	84	3	64	32	2	2	64	1.16
31186446--31186491	23	2.0	24	86	4	67	45	2	0	52	1.13
31187955--31187999	21	2.2	21	84	11	58	22	0	20	57	1.40
31188474--31188524	23	2.3	22	83	6	66	17	1	35	45	1.60
31188564--31188680	23	5.2	22	66	18	80	18	4	35	41	1.71
31188470--31188676	91	2.2	93	82	3	249	20	4	32	42	1.72
31191884--31191990	5	21.6	5	69	22	57	58	3	4	32	1.36
31193936--31193979	20	2.2	20	91	0	70	40	11	2	45	1.53
31198054--31198090	19	2.0	19	89	5	58	48	5	10	35	1.61
31198498--31198856	43	8.3	43	83	1	414	30	30	17	21	1.96
31202968--31202998	14	2.1	15	94	5	55	35	45	0	19	1.51
31203935--31204118	41	4.5	40	84	2	224	30	28	17	22	1.97
31203940--31204134	81	2.4	81	86	5	277	32	28	16	22	1.96
31204213--31204295	39	2.1	40	84	2	105	24	15	19	40	1.90
31206843--31206867	9	2.8	9	100	0	50	56	0	0	44	0.99
31208955--31208994	19	2.1	19	100	0	80	37	5	15	42	1.68
31215623--31215666	21	2.1	21	84	12	56	22	0	18	59	1.38
31217600--31217726	32	4.0	32	85	7	168	37	18	22	22	1.94
31217728--31217793	26	2.5	26	90	0	105	40	22	19	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31217895--31218029	24	5.6	24	80	0	117	45	21	6	26	1.76
31218094--31218190	27	3.6	27	87	1	142	27	23	17	30	1.97
31220360--31220393	9	4.0	9	85	14	54	55	0	0	44	0.99
31233207--31233256	17	2.9	17	90	0	82	42	6	26	26	1.78
31236746--31236778	17	1.9	17	100	0	66	42	6	27	24	1.78
31247795--31247882	46	1.9	46	88	4	133	37	19	21	21	1.94
31248083--31248209	32	4.0	32	81	7	159	39	19	20	20	1.93
31248252--31248318	27	2.5	26	84	13	84	31	23	22	22	1.98
31248379--31248489	24	4.6	24	88	0	132	44	23	8	24	1.80
31248559--31248621	27	2.4	27	80	15	69	26	26	15	30	1.96
31250868--31250901	9	4.0	9	85	14	54	55	0	0	44	0.99
31250864--31250971	5	21.6	5	69	23	50	58	1	5	34	1.32
31252409--31252448	20	2.0	20	85	5	53	50	0	15	35	1.44
31252908--31252951	20	2.2	19	84	11	61	38	13	2	45	1.56
31252914--31252951	20	1.9	20	94	0	67	39	10	2	47	1.52
31255081--31255118	16	2.5	16	87	8	53	55	0	0	44	0.99
31263628--31263671	20	2.2	20	84	4	54	36	13	0	50	1.42
31264254--31264308	25	2.2	25	78	9	60	49	0	5	45	1.25
31265149--31265184	5	7.8	5	82	17	51	38	0	0	61	0.96
31267372--31267430	26	2.3	26	82	11	68	28	16	25	28	1.97
31267507--31267618	24	4.6	24	81	8	104	25	8	22	44	1.79
31267537--31267618	24	3.5	24	89	1	112	21	8	23	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31267680--31267745	27	2.5	27	83	13	84	21	22	24	31	1.98
31267788--31267913	32	4.0	32	79	6	148	20	20	19	39	1.92
31267788--31267909	63	1.9	63	83	5	156	20	20	19	39	1.93
31269232--31269273	19	2.3	19	80	8	52	57	2	0	40	1.12
31285534--31285567	9	3.7	9	92	4	50	14	0	2	82	0.79
31304159--31304397	50	4.7	51	78	1	230	21	30	20	27	1.98
31304168--31304397	101	2.3	101	87	0	334	21	31	20	27	1.98
31309033--31309108	32	2.5	30	76	19	77	36	5	18	39	1.73
31310923--31310961	12	3.2	12	85	0	51	20	23	5	51	1.67
31311178--31311355	50	3.6	49	80	6	162	21	26	22	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189