genome.fa.s20.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  155  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46550107--46550135	14	2.1	14	100	0	58	51	13	6	27	1.66
46564971--46565413	220	2.0	219	92	0	742	39	19	13	27	1.88
46568934--46568972	11	3.3	11	80	19	51	82	0	2	15	0.79
46581519--46581569	3	16.7	3	95	4	93	33	0	0	66	0.92
46589768--46589797	14	2.1	14	100	0	60	26	13	20	40	1.89
46590285--46590351	34	1.9	35	87	3	100	44	14	8	31	1.76
46592676--46592718	17	2.5	17	92	0	77	16	44	25	13	1.85
46607342--46607393	22	2.2	24	78	21	58	34	0	5	59	1.21
46607503--46607566	33	2.1	32	82	11	80	48	21	6	23	1.73
46607546--46607612	34	1.9	35	87	3	100	44	11	8	34	1.73
46608182--46608245	32	2.0	32	93	0	110	42	10	14	32	1.80
46608618--46608663	17	2.6	18	80	13	51	47	0	26	26	1.52
46620346--46620374	10	3.0	10	95	5	51	51	0	10	37	1.36
46620617--46620688	37	1.9	37	94	0	126	20	13	30	34	1.92
46622901--46622986	45	1.9	45	90	4	138	24	18	15	41	1.89
46622963--46623044	14	5.7	14	76	11	85	24	20	10	43	1.84
46622918--46623044	58	2.2	59	87	4	177	24	19	12	43	1.86
46622977--46623210	45	5.2	45	86	1	319	26	17	14	41	1.88
46622903--46623089	103	1.8	103	87	4	279	25	18	13	42	1.87
46622977--46623238	90	2.9	90	82	9	315	26	17	15	41	1.88
46622977--46623245	45	6.0	44	82	9	209	26	17	15	40	1.89
46623176--46623280	42	2.4	44	81	7	117	33	17	17	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46624388--46624427	21	1.9	21	84	0	53	37	0	0	62	0.95
46628300--46628343	3	14.7	3	100	0	88	31	0	0	68	0.90
46643817--46643988	42	4.1	42	85	5	199	27	22	20	29	1.99
46643817--46643988	83	2.1	83	83	6	215	27	22	20	29	1.99
46644566--46644610	23	2.0	23	86	0	63	51	8	4	35	1.54
46648577--46648722	54	2.7	54	77	3	152	37	13	17	31	1.88
46648685--46648762	40	2.0	40	86	0	111	41	15	12	30	1.85
46648631--46648813	94	1.9	94	83	2	233	38	13	17	31	1.88
46648721--46649037	54	5.9	54	79	0	339	37	15	19	27	1.92
46648723--46649037	161	2.0	162	85	0	434	37	15	19	26	1.92
46648750--46649008	107	2.4	107	83	3	306	37	15	20	27	1.92
46663036--46663087	20	2.7	19	80	16	54	59	1	0	38	1.08
46668824--46668849	5	5.2	5	100	0	52	19	23	0	57	1.40
46668824--46668876	20	2.9	19	78	13	51	24	20	1	52	1.56
46670060--46670145	38	2.3	38	95	2	156	18	24	0	56	1.41
46670064--46670126	21	3.2	21	62	25	55	19	26	0	53	1.45
46670129--46670175	13	3.3	15	77	17	55	27	4	0	68	1.08
46676811--46676904	48	2.0	48	85	8	129	40	26	12	20	1.88
46679327--46679420	48	2.0	48	87	8	138	40	25	12	21	1.89
46690288--46690324	18	2.1	18	94	0	65	16	29	18	35	1.93
46694472--46694517	24	1.9	24	90	0	74	47	0	32	19	1.50
46694471--46694524	24	2.3	23	84	9	72	50	0	29	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46696736--46696790	28	2.0	29	89	7	87	60	14	5	20	1.54
46696989--46697078	34	2.6	34	82	0	99	41	15	11	32	1.82
46697641--46697710	31	2.3	31	94	0	122	21	35	25	17	1.95
46697695--46697754	29	2.1	29	90	0	93	18	38	25	18	1.93
46697695--46697769	29	2.6	29	85	4	80	18	38	24	18	1.93
46698137--46698185	26	2.0	24	84	8	62	71	4	22	2	1.13
46698188--46698443	85	3.0	85	100	0	512	42	16	16	24	1.88
46699429--46699462	16	2.1	16	94	0	59	23	5	11	58	1.55
46708126--46708249	58	2.1	59	86	1	169	16	8	14	59	1.59
46708233--46708276	19	2.3	19	88	0	61	13	9	25	52	1.70
46710622--46710652	15	2.1	15	94	5	55	38	0	0	61	0.96
46711195--46711258	31	2.1	31	83	13	80	40	1	1	56	1.18
46712294--46712413	59	2.0	59	98	0	231	23	14	16	45	1.84
46727258--46727324	30	2.2	30	91	0	107	38	22	17	20	1.93
46727416--46727500	29	2.9	28	82	10	91	35	29	12	22	1.91
46727385--46727547	30	5.4	30	75	7	116	39	26	15	19	1.91
46727885--46727930	16	2.9	16	87	6	58	34	19	17	28	1.94
46731907--46731953	11	4.3	11	78	7	51	65	6	4	23	1.33
46732129--46732172	18	2.4	19	88	7	65	75	2	0	22	0.92
46731936--46732083	9	15.8	9	68	12	66	63	3	3	29	1.27
46732615--46732863	9	26.8	9	67	17	91	31	2	3	62	1.25
46732740--46732837	19	5.3	18	75	19	71	32	1	4	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46732759--46732809	20	2.8	18	80	14	52	29	1	5	62	1.29
46732806--46732862	26	2.2	26	83	0	69	28	0	0	71	0.86
46743877--46744071	50	3.9	49	77	4	171	22	26	21	29	1.99
46746147--46746183	18	2.0	19	89	5	58	35	10	13	40	1.80
46746516--46746578	26	2.4	26	84	5	83	36	15	7	39	1.77
46749326--46749733	94	4.3	95	81	5	447	33	16	25	24	1.96
46755579--46755609	14	2.3	13	94	5	53	38	9	0	51	1.35
46756545--46756586	13	3.2	13	87	9	59	30	0	14	54	1.40
46757386--46757553	85	2.0	86	91	2	275	30	11	14	43	1.80
46757482--46757708	80	2.9	77	77	7	249	29	12	12	44	1.80
46775550--46775603	21	2.6	21	80	11	58	40	9	27	22	1.84
46780711--46780755	20	2.2	21	92	4	74	60	35	2	2	1.22
46780706--46780757	12	4.7	11	79	13	54	61	32	1	3	1.25
46789297--46789366	7	9.6	7	73	14	52	1	20	2	75	1.00
46789714--46789748	18	1.9	18	88	0	52	14	0	25	60	1.35
46793884--46794015	35	3.8	35	82	2	176	22	24	21	31	1.98
46793879--46794032	35	4.5	35	78	4	152	21	23	20	34	1.97
46794019--46794105	35	2.4	37	81	11	90	21	20	22	34	1.97
46793879--46794193	69	4.5	70	77	8	275	22	23	21	32	1.98
46802931--46802974	22	2.0	22	100	0	88	22	22	18	36	1.95
46813765--46813806	19	2.2	19	86	0	57	47	21	19	11	1.81
46814201--46814305	31	3.4	31	79	7	124	40	2	4	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46814179--46814311	61	2.2	61	93	0	221	42	3	5	48	1.40
46814967--46815004	3	12.7	3	94	0	67	65	0	0	34	0.93
46815081--46815121	11	3.8	11	75	18	50	31	0	2	65	1.05
46821555--46821658	44	2.5	41	76	19	115	36	29	4	28	1.78
46821566--46821658	44	2.1	46	91	4	154	37	30	4	27	1.76
46821574--46821671	46	2.2	44	85	7	126	40	30	6	22	1.78
46824508--46824538	3	10.3	3	100	0	62	35	32	0	32	1.58
46825273--46825351	15	5.4	14	79	13	70	69	1	26	2	1.09
46825652--46825714	19	3.3	19	76	12	74	19	1	6	73	1.13
46835307--46835334	11	2.5	11	100	0	56	35	0	35	28	1.58
46836219--46836259	21	2.0	21	100	0	82	39	14	4	41	1.67
46837158--46837231	3	26.0	3	81	10	93	66	0	32	1	1.00
46837158--46837236	17	5.0	17	72	22	82	67	0	31	1	0.99
46838250--46838330	40	2.0	41	85	7	112	30	23	19	25	1.98
46838780--46838824	18	2.5	18	88	0	63	15	37	31	15	1.89
46846278--46846323	16	3.0	16	84	6	60	47	0	4	47	1.21
46847657--46847681	13	1.9	13	100	0	50	40	0	0	60	0.97
46862101--46862125	13	1.9	13	100	0	50	52	0	0	48	1.00
46866578--46866628	26	2.0	26	92	0	84	41	5	1	50	1.37
46867567--46867610	21	2.0	22	86	4	63	15	18	9	56	1.65
46874435--46874472	14	2.8	13	92	7	67	47	5	10	36	1.61
46874710--46874902	34	5.6	34	80	2	206	20	22	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46874709--46874884	69	2.6	69	82	2	210	19	23	17	40	1.91
46874710--46874896	103	1.8	103	94	0	329	20	21	17	40	1.92
46877594--46877636	21	2.0	23	81	9	54	32	11	11	44	1.77
46881501--46881544	13	3.1	14	80	12	54	34	40	11	13	1.81
46884872--46885006	21	6.4	21	76	6	112	19	20	14	45	1.85
46884875--46885025	42	3.6	42	84	3	173	19	20	15	44	1.87
46884882--46885004	63	2.0	63	81	3	149	19	21	14	44	1.86
46888451--46888511	31	2.0	31	90	0	95	26	4	8	60	1.45
46901220--46901249	6	5.0	6	100	0	60	16	0	33	50	1.46
46926430--46926517	25	3.6	25	92	1	133	42	2	1	54	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189