genome.fa.s20.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  180  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53573186--53573274	22	4.0	22	85	8	110	29	26	0	43	1.55
53573227--53573325	52	1.9	52	83	8	130	31	31	0	37	1.58
53573279--53573320	22	1.9	22	90	0	66	33	33	0	33	1.58
53573362--53573424	28	2.2	30	82	8	85	36	0	1	61	1.05
53573514--53573569	24	2.3	23	77	19	60	28	0	5	66	1.14
53575691--53575725	18	2.0	18	88	5	54	48	20	0	31	1.50
53575718--53577171	28	54.8	28	80	14	1437	47	23	0	29	1.52
53575769--53577171	51	26.6	50	78	16	873	47	23	0	29	1.52
53576179--53576250	34	2.1	34	86	0	99	43	29	0	27	1.56
53576310--53576381	34	2.1	34	86	0	99	43	29	0	27	1.56
53576363--53576478	23	4.9	21	82	13	97	48	23	0	28	1.51
53575921--53576188	23	10.9	21	80	15	142	47	24	0	28	1.53
53576623--53576707	23	3.8	20	90	0	62	47	20	0	32	1.50
53577093--53577171	23	3.2	23	77	16	86	49	21	0	29	1.50
53580311--53580514	84	2.4	85	97	0	383	32	23	20	23	1.98
53580424--53580703	124	2.3	125	83	6	356	33	23	14	28	1.94
53581024--53581105	30	2.7	31	81	7	87	53	2	3	40	1.32
53581263--53581543	66	4.3	66	84	3	379	43	3	25	27	1.70
53581263--53581543	131	2.1	132	85	4	397	43	3	25	27	1.70
53591849--53591878	14	2.1	14	93	0	51	16	6	6	70	1.31
53591887--53591936	19	2.6	19	90	3	73	18	8	6	68	1.36
53593519--53593576	30	1.9	30	89	0	89	41	3	24	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53593788--53593819	13	2.5	13	94	0	55	31	0	12	56	1.37
53593914--53594155	50	4.7	50	86	4	297	26	24	29	19	1.99
53593914--53594163	100	2.4	103	88	6	364	26	24	29	20	1.99
53601109--53601166	30	1.9	30	89	0	89	41	3	24	31	1.71
53601378--53601409	13	2.5	13	94	0	55	31	0	12	56	1.37
53601504--53601745	50	4.7	50	86	4	297	26	24	29	19	1.99
53601504--53601753	100	2.4	103	88	6	364	26	24	29	20	1.99
53603100--53603140	21	1.9	22	85	5	57	36	2	4	56	1.34
53603257--53603282	5	5.2	5	100	0	52	42	19	19	19	1.90
53606642--53606705	31	2.1	31	88	2	94	39	1	1	57	1.17
53606956--53607034	25	3.2	25	72	16	65	34	0	1	64	1.02
53613089--53613142	27	2.0	27	100	0	108	14	14	22	48	1.81
53613774--53613808	18	1.9	18	88	0	52	25	37	8	28	1.85
53618757--53618785	15	1.9	15	100	0	58	20	6	31	41	1.79
53619421--53619469	19	2.5	20	83	9	57	48	22	2	26	1.61
53619440--53619491	13	4.0	13	77	5	52	51	25	0	23	1.48
53619602--53620278	7	93.4	7	65	17	122	46	25	1	26	1.59
53619636--53619804	22	7.9	22	71	15	106	46	26	0	26	1.57
53619599--53619717	57	2.1	57	85	3	159	44	29	0	25	1.60
53619741--53619804	15	4.3	15	76	9	51	46	26	1	25	1.61
53619771--53619848	22	3.5	22	78	5	61	51	25	0	23	1.49
53619875--53620214	22	15.7	21	69	16	90	46	25	1	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53619976--53620314	22	15.7	21	70	17	85	47	24	0	27	1.58
53619877--53620054	15	12.1	15	65	19	63	47	24	1	26	1.59
53620066--53620119	27	2.0	27	88	0	81	50	22	1	25	1.59
53620072--53620212	43	3.3	42	79	13	137	47	23	1	27	1.60
53620185--53620299	45	2.6	45	80	16	109	47	23	0	27	1.57
53620263--53620318	14	4.0	14	76	0	58	44	21	0	33	1.52
53620214--53620350	14	9.3	15	69	16	56	46	21	0	31	1.52
53620304--53620414	37	3.0	36	76	7	100	50	18	0	29	1.53
53620324--53620473	44	3.5	42	76	9	133	50	19	1	28	1.56
53620334--53620450	35	3.3	36	78	8	105	51	20	0	27	1.53
53620440--53620623	34	5.3	35	71	13	130	51	23	1	22	1.57
53620613--53620664	14	3.8	14	79	2	61	51	15	0	32	1.43
53620613--53620673	14	4.4	14	77	4	52	52	16	0	31	1.44
53620620--53620701	36	2.3	36	78	15	91	57	14	0	28	1.38
53620661--53620835	44	4.1	44	68	10	119	53	22	0	24	1.50
53620757--53620829	36	2.1	34	82	10	85	53	21	0	24	1.46
53620626--53620836	21	10.2	21	66	19	88	52	21	0	25	1.51
53620811--53620865	15	3.7	14	86	11	74	54	20	0	25	1.44
53620919--53620967	20	2.5	20	83	3	64	48	30	0	20	1.50
53620942--53620999	27	2.2	25	87	6	80	43	31	0	25	1.55
53628456--53628645	99	1.9	99	88	2	283	39	20	17	22	1.92
53639224--53639300	39	2.0	39	84	5	102	38	5	9	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53640359--53640455	48	2.0	49	85	2	133	18	16	22	42	1.89
53642324--53642420	49	2.0	48	89	2	149	20	15	22	41	1.90
53643027--53643052	11	2.4	11	100	0	52	38	7	0	53	1.30
53646053--53646120	27	2.5	27	80	0	82	19	22	19	39	1.92
53650279--53650336	27	2.2	26	79	11	64	41	0	1	56	1.09
53650343--53650390	20	2.4	20	82	6	62	35	0	4	60	1.16
53653172--53653229	29	1.9	31	86	6	84	24	1	10	63	1.35
53664149--53664192	17	2.6	17	85	3	63	47	0	11	40	1.39
53664698--53664723	12	2.2	12	100	0	52	42	15	7	34	1.75
53668195--53668253	26	2.3	26	81	0	64	40	15	13	30	1.86
53671141--53671184	23	1.9	23	90	0	70	31	25	6	36	1.82
53674010--53674058	23	2.1	24	84	3	64	46	4	18	30	1.67
53674248--53674287	21	1.9	21	84	0	53	65	7	5	22	1.38
53678741--53678882	57	2.4	58	80	9	162	29	21	24	23	1.99
53679005--53679135	67	2.0	67	92	0	217	21	16	33	28	1.95
53680742--53680865	49	2.5	49	87	7	178	23	11	29	35	1.90
53684396--53684491	31	3.1	31	95	3	174	31	9	13	45	1.75
53686771--53686824	18	2.8	19	86	13	67	37	0	0	62	0.95
53688178--53688234	29	1.9	30	85	3	80	61	7	0	31	1.23
53689918--53690005	40	2.2	40	83	6	106	35	21	21	21	1.96
53689935--53690070	40	3.4	38	79	7	139	39	22	19	17	1.92
53690118--53690386	41	6.6	40	86	5	362	24	23	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53690118--53690386	123	2.2	122	89	3	407	24	23	22	29	1.99
53691624--53691876	133	1.9	136	92	3	431	49	7	7	35	1.59
53695363--53695416	24	2.3	24	80	3	65	20	14	18	46	1.84
53696614--53696969	42	8.3	42	87	3	453	20	16	31	30	1.95
53698202--53698349	28	5.3	28	70	3	91	33	11	20	34	1.89
53698201--53698312	42	2.7	42	77	5	118	30	12	23	33	1.92
53702471--53702562	44	2.1	44	89	0	139	31	14	15	39	1.87
53704814--53705220	139	2.9	139	75	9	386	32	23	6	37	1.80
53705656--53705689	17	2.0	18	88	11	54	70	2	8	17	1.25
53709143--53709214	26	2.8	26	82	2	83	33	15	11	40	1.82
53709363--53709401	6	6.7	6	85	5	53	12	28	0	58	1.34
53709363--53709401	17	2.2	18	86	4	53	12	28	0	58	1.34
53711853--53711980	65	2.0	65	92	0	211	33	16	16	33	1.91
53714399--53714517	48	2.4	49	84	2	150	18	15	21	44	1.86
53714426--53714536	48	2.3	48	79	3	125	17	17	23	42	1.89
53715027--53715084	27	2.0	30	83	9	77	41	5	8	44	1.57
53719826--53720250	210	2.0	210	98	0	814	39	17	10	32	1.83
53720966--53721041	26	2.9	26	80	7	91	31	15	9	43	1.79
53741647--53741711	27	2.4	27	83	14	82	20	24	23	32	1.98
53741652--53741743	27	3.5	26	80	7	78	19	23	22	33	1.97
53741752--53741937	32	5.8	32	68	2	95	22	21	19	37	1.95
53741949--53741995	22	2.1	22	84	0	58	21	14	14	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53747347--53747503	53	3.0	53	82	5	203	34	23	12	29	1.91
53747353--53747523	50	3.3	53	81	5	204	32	23	14	29	1.94
53747499--53747641	59	2.6	55	85	7	184	25	20	24	28	1.99
53747499--53747659	52	2.9	54	77	9	157	29	19	22	27	1.98
53751838--53751880	20	2.2	20	86	0	59	37	13	39	9	1.78
53752705--53752835	63	2.1	63	86	0	181	25	26	23	24	2.00
53760339--53760379	20	2.1	19	86	13	57	78	4	14	2	1.03
53764275--53764907	316	2.0	316	94	0	1104	29	26	17	26	1.97
53765507--53765582	20	3.8	20	80	13	77	75	1	19	3	1.04
53773865--53774058	43	4.6	43	82	4	196	36	27	13	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189