genome.fa.s20.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  153  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46046641--46047149	251	2.1	246	83	5	652	33	21	16	29	1.95
46052968--46053002	3	11.7	3	100	0	70	34	0	31	34	1.58
46056029--46056056	3	9.3	3	100	0	56	67	0	0	32	0.91
46058584--46058657	28	2.6	29	91	2	114	40	18	27	13	1.88
46058560--46058749	79	2.4	79	83	1	229	39	19	26	14	1.90
46058663--46058748	29	3.0	29	82	1	93	38	20	25	15	1.92
46061872--46061933	3	20.7	3	96	0	115	66	32	0	1	1.02
46070182--46070212	12	2.6	12	94	0	53	61	0	0	38	0.96
46079132--46079294	83	2.0	83	100	0	326	26	16	14	42	1.87
46085650--46085765	21	5.9	21	67	21	72	45	0	2	51	1.14
46085652--46085779	55	2.2	58	83	5	163	46	1	2	50	1.24
46085873--46085960	44	2.0	46	84	8	119	39	25	4	30	1.75
46085947--46085986	16	2.5	16	83	0	53	35	25	2	37	1.69
46086530--46086626	49	2.0	49	89	4	151	43	9	17	29	1.80
46088317--46088360	22	2.0	22	90	0	70	34	2	36	27	1.70
46090716--46090762	21	2.2	22	84	3	60	14	25	2	57	1.49
46092930--46092967	12	3.1	12	96	3	67	18	10	0	71	1.14
46092931--46092978	25	1.9	25	86	0	69	14	10	0	75	1.06
46102776--46102870	49	1.9	49	86	0	136	43	8	15	32	1.77
46104135--46104168	7	4.9	7	92	0	50	11	0	14	73	1.10
46105239--46105300	13	4.8	13	80	7	72	35	8	20	35	1.83
46106777--46106837	24	2.6	23	82	10	70	57	4	32	4	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46117610--46117651	16	2.7	16	88	3	59	59	30	2	7	1.37
46125113--46125168	26	2.2	25	81	9	60	28	8	1	60	1.37
46125427--46125488	21	3.0	20	74	9	54	20	8	32	38	1.82
46125435--46125491	21	2.8	21	78	2	71	21	8	29	40	1.83
46125549--46125647	44	2.2	44	85	5	128	33	5	28	33	1.79
46125792--46125833	15	2.9	15	82	10	52	52	0	0	47	1.00
46129125--46129182	16	3.6	16	90	0	89	41	3	34	20	1.69
46129120--46129189	16	4.4	16	87	0	86	38	2	31	27	1.71
46129493--46129866	66	6.1	64	67	20	242	49	6	2	41	1.41
46129523--46129574	15	3.6	15	80	12	56	53	1	0	44	1.11
46129406--46129661	120	2.1	121	97	0	487	49	7	1	41	1.40
46129617--46129720	32	3.2	32	70	15	95	49	7	3	39	1.50
46129650--46129884	120	2.0	119	93	2	400	48	5	3	42	1.42
46129463--46129842	186	2.0	186	93	1	654	48	7	2	41	1.45
46129843--46129883	16	2.5	17	85	14	52	53	0	2	43	1.13
46132198--46132224	12	2.2	12	100	0	54	37	33	7	22	1.82
46133357--46133405	16	3.1	16	76	2	55	28	14	0	57	1.38
46153051--46153111	25	2.4	25	83	0	68	39	16	21	22	1.92
46154172--46154234	5	12.8	5	98	1	119	41	0	0	58	0.98
46155209--46155323	22	5.1	22	72	8	88	16	23	19	40	1.90
46155198--46155323	47	2.7	47	87	6	179	16	23	19	41	1.90
46159063--46159101	18	2.2	18	90	0	60	61	7	7	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46159194--46159241	18	2.8	18	87	6	64	41	6	0	52	1.27
46159208--46159248	18	2.3	18	86	0	55	39	9	0	51	1.35
46163436--46163491	27	2.1	27	89	0	85	7	51	21	19	1.70
46163965--46163997	11	2.8	12	90	9	59	0	6	6	87	0.65
46164227--46165143	458	2.0	458	96	1	1678	26	14	10	48	1.75
46167693--46167717	12	2.1	12	100	0	50	48	0	0	52	1.00
46171237--46171286	10	4.8	10	86	13	66	68	0	0	32	0.90
46171253--46171288	12	2.8	13	87	8	56	63	0	0	36	0.94
46171237--46171286	22	2.4	22	87	12	70	68	0	0	32	0.90
46171410--46171442	7	4.7	7	100	0	66	75	0	0	24	0.80
46172986--46173050	3	21.3	3	76	14	62	29	6	3	61	1.35
46173088--46173123	16	2.2	17	95	5	65	50	0	0	50	1.00
46175119--46175165	19	2.5	19	86	6	60	25	19	10	44	1.82
46176451--46176494	8	5.3	9	81	15	51	79	6	0	13	0.92
46176510--46176550	10	3.9	11	81	18	52	85	0	14	0	0.60
46176519--46176552	9	3.9	9	84	7	52	88	0	11	0	0.52
46178586--46178679	45	2.1	45	82	4	109	31	23	19	25	1.98
46178856--46179339	44	11.0	44	71	9	276	30	19	20	28	1.97
46178810--46179197	175	2.2	175	92	0	643	30	20	21	28	1.98
46178900--46179275	88	4.3	88	77	8	415	30	19	20	28	1.97
46178900--46179321	88	4.8	88	77	7	396	30	19	20	29	1.97
46181801--46182215	47	8.7	47	90	3	636	32	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46181801--46182215	96	4.4	96	93	2	707	32	8	29	29	1.86
46181801--46182215	143	2.9	143	89	5	653	32	8	29	29	1.86
46183775--46184408	44	14.6	44	69	9	338	30	20	20	28	1.97
46183817--46184109	129	2.3	129	94	0	514	29	21	20	28	1.98
46183946--46184279	175	1.9	175	94	1	589	30	20	20	28	1.98
46184116--46184408	129	2.3	129	92	1	471	31	20	20	27	1.98
46183992--46184276	85	3.3	84	75	10	304	30	20	20	29	1.97
46183813--46184454	304	2.1	304	92	1	1063	30	20	21	28	1.98
46185853--46185920	3	22.3	3	74	14	59	30	5	2	60	1.35
46185958--46185993	16	2.2	17	95	5	65	50	0	0	50	1.00
46186015--46186075	22	3.0	20	77	13	63	34	1	3	60	1.23
46186028--46186085	26	2.3	25	80	11	64	31	3	1	63	1.21
46189802--46189838	5	7.2	5	90	3	56	75	0	2	21	0.92
46192851--46192880	12	2.5	12	94	0	51	86	3	10	0	0.67
46213509--46213546	5	7.4	5	96	3	67	78	0	0	21	0.74
46214299--46214343	18	2.6	17	82	6	63	51	2	2	44	1.26
46219704--46219746	17	2.5	18	74	11	54	18	11	0	69	1.17
46221739--46221795	28	2.0	28	96	0	105	26	10	22	40	1.86
46223411--46223464	22	2.5	22	78	6	65	44	0	14	40	1.46
46223676--46223724	3	16.7	3	78	16	50	65	2	0	32	1.04
46225168--46225501	127	2.6	127	89	2	492	25	21	21	32	1.98
46225300--46225497	44	4.6	43	66	14	113	26	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46225621--46225757	44	3.1	43	62	17	102	28	26	20	24	1.99
46225617--46226381	87	8.8	87	92	0	1197	24	23	22	29	1.99
46225750--46225888	43	3.2	43	64	13	104	21	20	28	30	1.98
46226012--46226149	43	3.2	43	66	13	111	21	19	27	31	1.98
46231169--46231220	19	2.7	20	82	5	63	46	11	17	25	1.81
46233011--46233037	4	6.8	4	100	0	54	74	0	0	25	0.83
46233443--46233509	3	22.7	3	83	11	86	65	1	0	32	1.02
46236030--46236062	13	2.4	14	95	5	59	57	0	18	24	1.40
46238473--46238501	14	2.1	14	100	0	58	37	20	34	6	1.80
46240129--46240194	33	2.0	33	96	0	123	30	1	24	43	1.63
46240136--46240193	18	3.4	18	66	22	52	31	1	22	44	1.63
46240423--46240470	20	2.3	20	82	10	53	50	6	0	43	1.27
46243288--46243623	72	4.7	72	88	3	466	54	15	6	24	1.64
46246296--46246349	22	2.5	22	81	0	63	50	5	24	20	1.69
46249518--46249614	23	4.2	22	84	7	97	49	29	11	9	1.70
46249518--46249622	46	2.3	46	82	8	124	49	30	10	9	1.69
46251223--46251284	2	31.5	2	91	3	90	48	0	51	0	1.00
46253274--46253317	20	2.2	20	88	4	63	4	22	9	63	1.42
46253364--46253388	5	5.0	5	100	0	50	0	20	0	80	0.72
46257683--46257732	25	2.0	25	84	0	64	18	10	16	56	1.67
46258950--46258990	19	2.2	19	90	0	64	48	9	0	41	1.36
46264451--46265000	44	12.8	44	70	11	336	25	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46264451--46264862	85	4.8	85	73	10	311	24	22	22	30	1.99
46264383--46264991	129	4.7	129	90	1	945	25	21	22	30	1.99
46264624--46265079	214	2.1	212	83	5	553	26	20	23	29	1.99
46264580--46265036	85	5.3	84	74	7	346	26	21	23	29	1.99
46264629--46265079	85	5.3	85	75	7	392	27	20	23	29	1.98
46264322--46265035	129	5.6	127	87	3	854	26	21	21	30	1.99
46264322--46265035	258	2.8	255	87	3	1000	26	21	21	30	1.99
46265120--46266464	50	27.5	50	64	5	254	26	22	21	30	1.98
46265102--46266472	100	14.0	100	81	6	1448	26	21	21	30	1.98
46265262--46266472	486	2.5	487	93	0	2048	26	21	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189