genome.fa.s20.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  118  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33166759--33166980	89	2.5	89	82	7	238	21	24	14	39	1.91
33170342--33170408	11	6.5	10	74	19	50	64	2	1	31	1.18
33170345--33170397	19	2.6	21	77	17	58	66	3	1	28	1.20
33170513--33170544	16	2.0	16	93	0	55	71	0	0	28	0.86
33186246--33186283	19	2.0	19	100	0	76	26	36	10	26	1.89
33191176--33191236	25	2.4	25	91	2	95	37	18	9	34	1.83
33196640--33196693	5	10.8	5	86	7	65	24	33	0	42	1.55
33215109--33215134	2	13.0	2	100	0	52	0	50	0	50	1.00
33220819--33220870	22	2.4	22	81	12	54	50	1	3	44	1.31
33224006--33224068	28	2.2	28	83	5	74	38	6	6	49	1.54
33234647--33234672	11	2.4	11	100	0	52	15	7	7	69	1.35
33238458--33238487	15	2.0	15	93	0	51	23	40	23	13	1.90
33242184--33242214	14	2.2	14	94	0	53	48	12	0	38	1.42
33244070--33244108	6	6.5	6	84	0	51	76	5	0	17	0.96
33245730--33245779	17	2.9	17	80	11	57	72	0	12	16	1.13
33245742--33245795	18	2.8	19	74	25	51	68	0	11	20	1.19
33245712--33245818	51	2.1	48	80	10	117	69	2	9	18	1.28
33249670--33249696	14	1.9	14	100	0	54	74	0	11	14	1.08
33249683--33249729	12	4.0	12	80	2	51	72	2	6	19	1.17
33251796--33251830	14	2.4	14	90	9	52	45	0	5	48	1.26
33254258--33254333	23	3.2	25	73	16	81	46	5	0	48	1.24
33254267--33254332	23	2.9	23	76	10	82	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33254260--33254333	22	3.4	22	75	14	82	45	5	0	48	1.25
33257819--33257868	21	2.4	21	93	0	82	34	6	26	34	1.81
33260758--33260813	3	18.3	3	78	10	60	62	3	3	30	1.29
33262412--33263101	44	15.7	44	72	10	421	27	21	19	31	1.97
33262791--33263126	181	1.9	181	90	0	546	27	22	16	34	1.95
33263429--33263476	24	2.0	24	95	0	87	29	27	12	31	1.93
33266250--33266705	47	9.6	47	93	1	741	33	8	29	28	1.86
33266250--33266705	96	4.8	96	93	2	753	33	8	29	28	1.86
33269127--33269239	38	3.0	38	93	2	183	30	18	27	23	1.98
33269293--33269598	40	7.7	40	92	1	483	24	21	28	25	1.99
33269293--33269611	119	2.7	120	92	1	518	24	21	28	25	1.99
33269293--33269598	159	1.9	158	90	0	486	24	21	28	25	1.99
33273051--33273554	47	10.6	47	92	3	810	33	8	29	28	1.86
33273051--33273554	96	5.3	94	94	1	810	33	8	29	28	1.86
33275977--33276098	45	2.6	45	84	7	145	14	25	19	40	1.90
33277058--33277098	11	3.6	12	77	12	50	0	24	0	75	0.80
33277061--33277106	16	2.7	17	77	16	51	0	23	0	76	0.79
33277752--33277852	52	1.9	52	95	0	184	30	26	12	29	1.93
33278997--33279043	19	2.5	20	86	6	62	44	10	19	25	1.82
33281446--33281481	16	2.3	15	90	4	54	63	0	8	27	1.23
33290223--33290320	28	3.5	28	94	1	171	33	27	11	27	1.91
33295873--33295915	22	2.0	22	86	9	61	48	4	16	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33296719--33296748	5	6.0	5	100	0	60	60	0	40	0	0.97
33297226--33297258	3	11.0	3	100	0	66	33	0	0	66	0.92
33297497--33297540	14	3.3	13	87	12	63	29	2	6	61	1.34
33297486--33297540	26	2.0	28	89	6	87	30	1	9	58	1.40
33302499--33302525	14	1.9	14	100	0	54	22	14	7	55	1.64
33302673--33302712	21	1.9	21	84	0	53	35	22	10	32	1.87
33303149--33303177	13	2.1	14	93	6	51	55	0	0	44	0.99
33303609--33303708	3	33.3	3	97	0	191	0	34	0	66	0.92
33305873--33305915	21	2.0	21	82	8	52	51	20	2	25	1.60
33307531--33307652	59	2.0	60	98	1	237	41	21	1	35	1.63
33311859--33311900	19	2.2	19	91	0	66	42	33	4	19	1.72
33322086--33322110	12	2.1	12	100	0	50	8	8	16	68	1.38
33328138--33328425	44	6.5	44	86	0	342	30	18	18	32	1.95
33328138--33328425	88	3.3	88	86	1	380	30	18	18	32	1.95
33328138--33328425	132	2.2	133	85	0	389	30	18	18	32	1.95
33336324--33336374	19	2.7	20	85	11	63	43	3	21	31	1.71
33336417--33336464	19	2.4	19	86	6	60	50	14	0	35	1.44
33342733--33342845	40	2.8	39	78	4	109	38	22	20	19	1.94
33343341--33343394	7	7.6	7	81	4	63	18	0	31	50	1.48
33343382--33343421	21	1.9	21	89	0	62	20	0	37	42	1.52
33344929--33345272	41	8.4	41	91	0	499	23	27	20	29	1.98
33347753--33347784	13	2.3	15	89	10	50	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33348696--33348733	21	1.9	20	84	10	51	10	13	7	68	1.39
33350187--33350244	29	2.0	29	96	0	107	44	12	13	29	1.80
33351561--33351830	43	6.3	43	76	4	215	24	14	29	32	1.94
33351561--33351799	86	2.8	84	81	3	255	25	13	29	31	1.93
33351561--33351830	86	3.2	86	78	5	246	24	14	29	32	1.94
33353329--33353365	19	1.9	19	88	0	56	40	16	13	29	1.86
33354590--33354732	51	2.8	51	85	6	200	22	16	29	32	1.95
33354654--33354734	26	3.2	26	65	28	73	22	14	29	33	1.94
33354958--33354989	16	2.0	16	93	0	55	59	0	15	25	1.36
33357508--33357585	31	2.6	30	83	4	95	53	10	14	21	1.70
33371907--33371955	9	5.4	9	82	0	62	8	42	14	34	1.75
33371901--33371955	18	3.1	18	78	0	65	10	43	12	32	1.78
33374030--33374123	13	7.1	13	83	4	116	53	5	5	36	1.47
33374030--33374123	27	3.5	26	82	4	116	53	5	5	36	1.47
33374030--33374123	40	2.3	40	92	0	152	53	5	5	36	1.47
33380110--33380134	13	1.9	13	100	0	50	36	0	16	48	1.46
33383336--33383680	172	2.0	172	95	0	627	38	21	12	27	1.89
33386845--33386959	43	2.7	43	79	12	128	33	30	17	19	1.95
33393847--33393884	19	2.0	20	89	5	60	73	7	15	2	1.17
33394012--33394066	23	2.3	25	79	20	64	3	18	7	70	1.25
33397835--33397881	23	2.0	23	84	8	60	38	2	2	57	1.23
33397897--33397932	7	5.3	7	96	3	65	11	0	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33402538--33402570	14	2.3	15	94	5	59	57	0	3	39	1.14
33407954--33408046	44	2.1	45	88	6	136	31	4	30	34	1.77
33408279--33408464	59	3.1	59	67	22	145	50	3	3	43	1.34
33408292--33408357	16	4.5	15	71	21	50	53	0	1	45	1.09
33408183--33408507	120	2.7	119	92	2	519	47	4	3	44	1.40
33408218--33408408	61	3.2	60	71	19	198	47	6	2	43	1.42
33408417--33408689	91	3.0	91	95	1	478	48	3	3	45	1.35
33413123--33413228	53	2.0	53	96	0	194	59	13	20	6	1.56
33420955--33420997	22	2.0	22	90	0	68	46	16	2	34	1.60
33424193--33424235	22	2.0	22	90	0	68	46	16	2	34	1.60
33435850--33435875	3	8.7	3	100	0	52	69	0	30	0	0.89
33437840--33437878	19	2.0	21	85	10	55	69	5	10	15	1.34
33438053--33438097	23	2.0	22	91	4	72	40	17	4	37	1.70
33438050--33438129	19	4.0	19	85	10	97	40	16	7	36	1.77
33438484--33439721	44	28.5	43	68	15	280	27	23	20	28	1.99
33438485--33438950	217	2.1	219	86	3	645	27	22	20	29	1.98
33438745--33439198	84	5.3	84	71	13	366	27	23	20	27	1.99
33438658--33439292	173	3.7	170	80	9	696	27	23	20	28	1.99
33438485--33439029	217	2.5	217	81	5	577	27	22	21	28	1.99
33438876--33439246	129	2.9	129	79	10	323	27	23	21	27	1.99
33438658--33439294	346	1.8	346	91	0	1040	27	23	20	28	1.99
33438658--33439375	346	2.1	345	86	2	994	27	23	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33438993--33439510	217	2.4	217	91	0	849	27	23	20	28	1.99
33439302--33439683	173	2.2	172	91	3	608	28	23	20	27	1.99
33439267--33439811	173	3.2	173	81	6	434	28	23	20	27	1.99
33438921--33439863	389	2.4	385	84	6	1127	27	23	20	28	1.99
33439794--33440206	132	3.1	130	89	3	630	25	22	21	30	1.99
33439844--33440028	44	4.2	44	65	13	119	25	22	20	31	1.98
33441466--33441512	16	3.1	15	74	14	51	4	14	0	80	0.85
33445610--33445659	23	2.2	22	92	3	82	38	18	4	40	1.69
33445615--33445712	19	4.8	19	85	9	106	38	16	8	36	1.78
33445649--33445711	21	3.1	21	90	9	112	38	14	9	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189