genome.fa.s20.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  134  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38809134--38809166	9	3.7	9	88	11	50	39	12	24	24	1.89
38814745--38814777	17	1.9	18	88	11	52	42	12	0	45	1.41
38814874--38814926	14	3.8	13	80	5	52	37	3	0	58	1.16
38816828--38816896	31	2.3	31	85	7	88	42	21	11	24	1.86
38817772--38817861	3	30.3	3	93	6	157	0	33	0	66	0.92
38822772--38822851	39	2.1	39	97	0	151	22	21	15	41	1.90
38838351--38838592	120	2.0	121	91	4	389	28	16	11	42	1.83
38838864--38838912	7	7.4	7	73	13	50	67	2	0	30	1.02
38838873--38838919	17	2.7	18	83	3	51	68	2	0	29	1.02
38838864--38838923	25	2.4	25	75	5	68	65	1	0	33	1.03
38839001--38839045	19	2.3	20	81	14	58	57	2	0	40	1.11
38840258--38840303	20	2.3	21	78	17	53	26	6	6	60	1.46
38841448--38841498	15	3.5	15	76	12	52	78	0	17	3	0.90
38841448--38841500	18	3.1	17	76	15	56	79	0	16	3	0.88
38843376--38843462	9	9.7	9	70	5	59	26	12	32	28	1.93
38843374--38843426	18	2.9	18	81	10	72	26	13	32	28	1.93
38843376--38843462	27	3.2	27	80	0	84	26	12	32	28	1.93
38850009--38850053	9	5.0	9	77	0	54	24	11	33	31	1.90
38850009--38850061	18	2.9	18	82	0	70	24	11	33	30	1.90
38850011--38850070	27	2.2	27	90	0	93	26	11	33	28	1.91
38850030--38850097	27	2.5	27	82	0	73	29	13	30	26	1.94
38851546--38851596	24	2.1	24	100	0	102	49	7	7	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38853349--38853520	95	1.8	95	96	0	317	42	8	11	37	1.71
38853499--38853533	16	2.2	16	100	0	70	54	5	0	40	1.24
38860319--38861095	47	16.3	47	92	2	1266	33	8	28	29	1.87
38860319--38861095	96	8.2	94	93	2	1266	33	8	28	29	1.87
38860319--38861095	143	5.4	143	94	2	1301	33	8	28	29	1.87
38864540--38864644	20	5.2	20	67	4	68	20	32	18	28	1.96
38864504--38864644	40	3.5	40	85	2	178	21	31	17	29	1.97
38867362--38867608	27	9.1	27	71	14	120	25	14	18	41	1.88
38867375--38867608	54	4.3	55	79	9	216	25	13	19	41	1.88
38867376--38867608	81	2.9	81	83	2	281	25	13	19	41	1.88
38868597--38868948	176	2.0	176	99	0	695	27	36	7	28	1.85
38870629--38870707	37	2.1	37	88	0	113	26	31	17	24	1.97
38870826--38871353	47	11.1	47	92	4	875	29	29	8	31	1.88
38870826--38871353	95	5.6	96	96	1	933	29	29	8	31	1.88
38870826--38871353	191	2.8	189	95	2	927	29	29	8	31	1.88
38873703--38873913	40	5.2	40	87	1	251	27	27	21	23	1.99
38873703--38873951	120	2.1	120	80	3	268	26	28	21	24	1.99
38873703--38873951	80	3.1	79	78	5	205	26	28	21	24	1.99
38873902--38874029	39	3.3	38	76	10	116	22	28	22	26	1.99
38874335--38874413	29	2.7	29	86	5	106	27	32	15	24	1.95
38874395--38874531	43	3.4	43	82	17	211	27	35	14	22	1.93
38874444--38874512	34	2.0	34	100	0	138	33	31	11	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38876379--38876455	37	2.1	36	88	4	111	25	31	18	24	1.97
38876574--38877100	47	11.1	47	94	3	907	29	30	8	31	1.87
38876574--38877100	96	5.6	96	96	2	933	29	30	8	31	1.87
38883431--38883532	51	2.0	51	88	3	152	24	16	14	44	1.86
38891157--38891397	50	4.7	52	80	5	217	25	22	29	23	1.99
38891157--38891404	100	2.4	103	80	4	259	25	22	29	22	1.99
38898673--38898970	50	5.9	50	82	4	285	25	21	29	23	1.99
38902967--38903017	26	1.9	27	84	4	68	31	21	17	29	1.96
38911950--38912048	27	3.7	27	89	4	137	41	25	18	15	1.89
38911950--38912064	27	4.3	27	87	0	131	42	23	17	16	1.88
38912402--38912583	28	6.5	28	85	1	222	22	23	24	29	1.99
38912384--38912587	56	3.6	56	84	0	237	21	23	22	32	1.98
38912384--38912592	84	2.5	84	88	0	294	22	23	22	32	1.98
38914450--38914500	26	2.0	26	88	0	75	41	29	17	11	1.85
38914679--38914786	27	4.0	26	79	7	108	22	15	17	44	1.86
38918397--38918438	19	2.2	19	87	8	59	45	11	2	40	1.54
38919078--38919140	22	2.8	22	81	11	74	9	0	47	42	1.36
38923191--38923261	26	2.7	26	77	0	79	26	23	19	29	1.98
38923949--38924108	52	3.0	52	65	16	130	26	10	13	48	1.75
38923902--38924067	52	3.2	51	68	16	149	31	7	12	49	1.67
38923900--38924108	106	2.0	106	95	0	373	29	9	12	48	1.72
38933347--38933414	34	2.0	34	82	5	84	22	26	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38935679--38935725	20	2.3	20	85	0	67	29	36	12	21	1.91
38937976--38938036	32	1.9	31	90	3	95	39	8	6	45	1.60
38940989--38941039	26	2.0	26	96	0	93	54	9	5	29	1.56
38941312--38941359	24	2.0	24	92	4	80	31	8	16	43	1.78
38951083--38951140	28	2.0	29	80	9	66	20	5	18	55	1.62
38958388--38958513	34	3.7	34	96	1	236	49	15	5	29	1.68
38962669--38962760	34	2.7	34	98	1	177	48	15	5	30	1.67
38968517--38968694	85	2.1	85	96	0	329	38	8	26	26	1.85
38969957--38970455	47	10.6	47	91	3	679	33	9	29	27	1.89
38969957--38970455	96	5.3	94	90	3	681	33	9	29	27	1.89
38970306--38970427	22	5.3	22	62	21	61	33	11	29	25	1.91
38969957--38970434	139	3.4	141	90	5	732	32	9	29	27	1.89
38969957--38970455	186	2.6	189	85	5	697	33	9	29	27	1.89
38972498--38972528	16	1.9	16	93	0	53	80	0	12	6	0.89
38987797--38987845	23	2.1	23	100	0	98	40	0	12	46	1.41
38990073--38990127	25	2.1	27	83	6	69	60	7	9	23	1.52
38991217--38991426	34	6.1	34	81	0	222	34	30	6	28	1.82
38991671--38991700	15	2.1	15	93	6	53	66	6	0	26	1.16
39002448--39002472	9	2.8	9	100	0	50	36	12	12	40	1.79
39002588--39002655	25	2.7	25	88	0	100	27	23	25	23	2.00
39006879--39006954	34	2.2	34	92	0	125	35	9	11	43	1.73
39009459--39009507	10	4.9	10	80	7	55	20	18	16	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39009447--39009507	20	3.0	20	82	0	77	24	18	16	40	1.90
39009570--39009617	20	2.4	20	89	6	71	29	22	14	33	1.94
39009694--39009738	22	2.1	22	84	8	58	26	13	6	53	1.64
39010980--39011033	6	9.0	6	83	0	72	75	1	18	3	1.03
39011000--39011051	24	2.2	24	85	0	68	71	5	17	5	1.26
39011112--39011150	18	2.3	18	86	8	55	69	0	17	12	1.19
39012963--39013038	34	2.2	34	92	0	125	36	7	11	43	1.71
39018008--39018049	14	2.8	16	82	13	54	23	4	2	69	1.20
39018009--39018049	15	2.8	15	88	3	57	24	4	2	68	1.22
39018106--39018138	11	2.9	12	86	13	52	18	6	6	69	1.30
39027240--39027283	22	2.0	21	83	12	54	40	0	0	59	0.98
39031814--39031846	17	1.9	17	100	0	66	30	0	33	36	1.58
39038240--39038288	24	2.0	24	96	0	89	30	16	10	42	1.81
39038583--39038632	16	3.4	15	75	13	59	16	4	2	78	1.00
39040519--39040582	30	2.0	30	85	11	83	10	28	6	54	1.59
39041501--39041644	27	5.4	26	80	8	155	43	20	15	20	1.88
39041494--39041631	53	2.6	52	83	4	159	44	18	15	20	1.86
39041797--39041859	26	2.4	26	86	0	90	20	19	20	39	1.92
39041797--39041899	26	4.0	26	75	5	73	24	18	17	39	1.91
39042014--39042071	28	2.1	27	83	3	71	22	22	25	29	1.99
39050495--39050672	27	6.6	27	84	3	205	29	28	15	26	1.96
39050516--39050671	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39058753--39058930	27	6.6	27	84	3	205	29	28	15	26	1.96
39058774--39058929	82	1.9	81	88	3	233	29	28	15	26	1.96
39061376--39061489	27	4.3	27	88	1	149	46	21	13	19	1.83
39061376--39061502	27	4.7	27	85	5	141	44	22	11	21	1.84
39063947--39064049	26	4.0	26	81	5	75	21	17	22	38	1.93
39064089--39064139	21	2.4	21	93	0	93	11	3	50	33	1.57
39069673--39069703	9	3.4	9	90	0	53	25	12	22	38	1.90
39069757--39069793	9	4.1	9	89	0	56	48	13	8	29	1.71
39071792--39071924	28	4.8	28	82	3	169	28	21	13	36	1.92
39078400--39078604	35	5.6	35	69	16	139	25	20	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189