genome.fa.s20.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  157  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47181566--47181768	75	2.8	74	82	9	240	20	18	28	32	1.96
47185848--47185903	21	2.5	23	82	8	71	66	3	10	19	1.37
47185875--47185925	26	1.9	27	84	11	70	68	5	7	17	1.34
47193364--47193404	18	2.3	18	87	4	57	34	12	17	36	1.87
47194344--47194390	21	2.2	22	81	11	53	40	21	8	29	1.83
47195176--47195302	62	2.0	63	95	1	229	23	20	28	27	1.99
47198242--47198282	18	2.3	18	87	4	57	34	12	17	36	1.87
47200028--47200097	20	3.3	20	73	13	61	38	0	0	61	0.96
47201591--47201640	21	2.4	21	90	3	75	36	12	14	38	1.83
47208209--47208246	19	2.0	19	100	0	76	42	5	21	31	1.75
47210620--47210648	14	2.0	15	93	6	51	20	0	6	72	1.07
47210662--47210872	9	22.7	9	70	20	73	35	2	3	58	1.29
47210664--47210892	10	24.3	10	67	19	68	34	3	3	59	1.28
47210664--47210728	20	3.3	19	81	10	76	33	0	3	63	1.10
47210662--47210872	65	3.2	62	75	14	167	35	2	3	58	1.29
47214923--47214973	24	2.0	25	85	14	70	17	17	3	60	1.50
47215995--47216049	10	5.6	10	75	12	51	60	1	5	32	1.30
47215985--47216060	29	2.7	29	76	17	86	59	1	7	31	1.34
47221569--47221632	31	2.1	31	100	0	128	40	12	18	28	1.87
47224663--47224748	6	13.5	6	80	13	75	73	3	3	19	1.13
47224669--47224748	20	4.2	19	75	18	69	73	3	3	18	1.13
47224980--47225020	19	2.1	20	86	4	57	21	2	56	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47227939--47228034	31	3.2	31	77	14	96	55	4	11	29	1.54
47229522--47229562	19	2.2	18	86	4	55	26	7	12	53	1.64
47235798--47235855	30	1.9	31	85	3	82	20	15	0	63	1.30
47240095--47240147	21	2.7	20	85	8	72	13	0	30	56	1.37
47241604--47241638	16	2.2	16	100	0	70	42	25	5	25	1.77
47266904--47267014	17	6.2	18	70	22	67	27	8	0	63	1.29
47266963--47267039	29	2.6	28	80	13	84	28	10	0	61	1.29
47266924--47267005	43	1.9	43	82	5	103	28	8	1	62	1.32
47267147--47267245	25	3.9	25	74	11	85	31	4	4	60	1.34
47274071--47274105	13	2.7	13	100	0	70	22	14	31	31	1.94
47274634--47274706	5	13.6	5	71	23	51	21	4	0	73	0.99
47280932--47280956	13	1.9	13	100	0	50	84	0	16	0	0.63
47282078--47282207	46	2.8	45	90	4	206	33	16	27	22	1.96
47282209--47282664	132	3.5	130	85	3	556	30	18	25	26	1.98
47282613--47282798	88	2.1	89	82	2	230	32	21	20	24	1.98
47282209--47282724	132	3.9	132	81	5	323	30	19	24	25	1.98
47282813--47283170	134	2.7	134	84	3	443	32	18	23	25	1.97
47282838--47283173	89	3.8	90	80	4	376	32	18	23	25	1.97
47282834--47283173	45	7.6	45	81	1	342	32	18	22	26	1.97
47284163--47284273	29	3.8	29	68	9	82	26	7	2	63	1.33
47284178--47284294	15	8.1	14	71	17	62	25	8	1	64	1.32
47284178--47284294	58	2.0	58	81	6	139	25	8	1	64	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284206--47284292	44	2.0	44	82	13	108	25	9	1	64	1.30
47284241--47284286	15	2.9	15	93	6	74	23	8	2	65	1.32
47288833--47288895	34	1.9	32	87	6	90	34	0	1	63	1.04
47289777--47289804	11	2.5	11	100	0	56	57	35	7	0	1.26
47289984--47290025	9	4.6	9	82	5	57	9	40	14	35	1.78
47308998--47309089	43	2.2	43	98	2	177	28	18	6	46	1.74
47311061--47311114	23	2.5	21	75	16	56	25	0	1	72	0.95
47311059--47311106	23	2.0	24	84	11	64	31	0	2	66	1.03
47319035--47319075	22	1.9	22	85	14	59	48	0	2	48	1.14
47320629--47320694	31	2.1	31	85	0	87	48	19	12	19	1.80
47321517--47321556	20	2.0	20	85	0	53	52	2	12	32	1.52
47326603--47326642	3	13.3	3	94	0	71	30	0	2	67	1.04
47326603--47326654	12	4.3	12	87	0	68	28	0	3	67	1.08
47339197--47339658	44	10.8	45	73	15	270	30	19	22	26	1.98
47339362--47339649	46	6.6	46	76	15	226	29	20	22	26	1.99
47339190--47339802	170	3.6	170	93	0	996	30	20	22	27	1.98
47341320--47341347	3	9.3	3	100	0	56	32	0	0	67	0.91
47346862--47346901	20	2.0	20	85	0	53	52	2	12	32	1.52
47351322--47351364	15	2.8	15	83	16	61	37	2	4	55	1.33
47351685--47351719	18	1.9	18	94	0	61	28	8	0	62	1.24
47351719--47351748	13	2.4	13	94	5	53	46	0	6	46	1.29
47356154--47356191	17	2.2	17	95	0	67	42	5	26	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47357187--47357258	36	2.0	36	97	0	135	26	19	16	37	1.93
47364484--47364549	31	2.1	31	85	0	87	48	19	10	21	1.79
47373270--47373315	2	23.5	2	82	4	58	43	2	0	54	1.12
47374479--47374554	28	2.8	26	75	11	73	71	3	3	21	1.19
47374954--47374986	14	2.4	14	90	5	50	75	6	0	18	1.00
47375660--47375694	14	2.4	15	90	4	54	5	0	20	74	1.02
47382129--47382163	18	1.9	18	88	0	52	22	5	51	20	1.68
47385268--47385300	3	11.3	3	93	6	59	69	0	30	0	0.88
47391999--47392054	22	2.5	22	79	0	76	39	30	0	30	1.57
47392088--47392141	27	2.0	27	89	7	83	40	0	0	59	0.98
47392232--47392265	15	2.3	15	90	5	52	26	0	5	67	1.13
47393222--47393246	7	3.6	7	100	0	50	28	0	12	60	1.32
47395443--47395564	23	5.3	23	90	0	199	21	21	27	30	1.98
47395445--47395564	46	2.6	46	97	0	222	20	21	27	30	1.98
47397100--47397621	29	18.6	29	85	7	693	43	22	1	31	1.61
47397789--47397843	25	2.2	25	96	0	101	36	21	5	36	1.77
47400815--47401090	125	2.2	126	89	2	414	31	22	15	30	1.95
47401375--47401436	29	2.2	28	88	2	88	43	14	14	27	1.84
47411717--47411741	12	2.1	12	100	0	50	52	16	8	24	1.70
47423603--47423733	37	3.5	37	82	0	172	18	13	25	41	1.87
47429110--47429145	19	1.9	18	88	5	54	58	0	0	41	0.98
47429144--47429189	22	2.0	22	84	16	58	58	4	0	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47429585--47429626	17	2.4	18	84	8	59	52	2	0	45	1.13
47436925--47436973	21	2.5	19	80	9	55	61	10	4	24	1.45
47437455--47437489	17	2.1	17	94	0	61	54	11	2	31	1.51
47437644--47437708	17	3.8	17	77	0	58	20	41	23	15	1.89
47448185--47448233	22	2.2	22	88	0	71	34	18	16	30	1.93
47449887--47449947	30	2.0	30	90	6	97	24	16	24	34	1.95
47452236--47452274	18	2.2	17	86	13	53	33	0	20	46	1.51
47452501--47452591	23	4.0	23	88	0	146	20	23	24	31	1.98
47454236--47454298	26	2.4	26	86	0	81	25	25	9	39	1.86
47454250--47454321	26	2.8	26	86	0	99	26	18	13	41	1.87
47461006--47461052	5	9.2	5	80	13	51	38	14	25	21	1.92
47461701--47461759	30	1.9	31	86	3	84	38	0	40	20	1.53
47461966--47462002	9	4.1	9	85	0	56	29	8	13	48	1.71
47466303--47466351	19	2.6	19	80	0	53	38	2	2	57	1.22
47476561--47476603	20	2.1	20	83	12	52	51	6	6	34	1.56
47476976--47477009	16	2.1	16	88	5	50	41	8	0	50	1.34
47478032--47478090	31	1.9	31	96	0	109	18	23	11	45	1.83
47485335--47485403	21	3.1	21	76	14	68	28	14	1	55	1.48
47485335--47485383	7	7.0	7	78	17	57	30	14	2	53	1.52
47485335--47485389	14	3.9	15	79	13	62	30	18	1	49	1.58
47485541--47485587	24	2.0	24	83	8	60	29	0	10	59	1.31
47495127--47497027	69	27.6	69	66	9	379	31	25	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47495113--47497100	276	7.2	276	77	3	1469	31	25	15	26	1.96
47495128--47497096	138	14.3	137	75	4	1269	31	25	15	26	1.96
47500522--47500576	21	2.6	21	88	0	74	20	41	21	16	1.90
47501664--47501706	13	3.3	13	80	0	50	39	20	2	37	1.66
47501599--47501706	53	2.1	52	82	5	128	36	20	2	40	1.67
47502684--47502720	13	2.8	13	95	0	65	21	29	5	43	1.75
47509591--47509642	17	3.1	17	86	10	79	15	19	30	34	1.93
47509688--47509748	18	3.4	18	81	2	70	13	16	27	42	1.85
47516975--47517024	23	2.2	22	96	3	91	44	18	0	38	1.50
47518060--47518496	32	13.7	32	78	1	385	40	14	10	33	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189